Wall clock time and date at job start Tue Mar 31 2020 01:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 5 5 H 1.07999 * 119.99515 * 240.00498 * 4 2 1 6 6 C 1.37870 * 120.00176 * 59.99965 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47288 * 59.99994 * 8 6 4 10 10 H 1.48503 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46819 * 299.99648 * 8 6 4 12 12 C 1.50698 * 109.47342 * 119.99730 * 2 1 3 13 13 O 1.20825 * 119.99963 * 119.99623 * 12 2 1 14 14 O 1.34225 * 119.99990 * 300.00183 * 12 2 1 15 15 C 1.45205 * 116.99943 * 179.97438 * 14 12 2 16 16 H 1.08999 * 110.26775 * 329.37479 * 15 14 12 17 17 C 1.54347 * 110.30122 * 207.20216 * 15 14 12 18 18 C 1.54348 * 102.39101 * 267.42373 * 17 15 14 19 19 C 1.51359 * 105.16919 * 333.65381 * 18 17 15 20 20 C 1.38225 * 109.76760 * 17.18792 * 19 18 17 21 21 C 1.38467 * 119.86726 * 179.97438 * 20 19 18 22 22 C 1.38150 * 120.26616 * 0.02804 * 21 20 19 23 23 C 1.38177 * 119.96777 * 359.97438 * 22 21 20 24 24 C 1.38374 * 119.90374 * 359.97438 * 23 22 21 25 25 F 1.35095 * 119.91714 * 180.02562 * 24 23 22 26 26 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 27 27 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 30 30 H 1.09005 * 110.82522 * 25.65010 * 17 15 14 31 31 H 1.08997 * 110.82153 * 149.19870 * 17 15 14 32 32 H 1.08997 * 110.30225 * 214.72592 * 18 17 15 33 33 H 1.08998 * 110.38484 * 92.61981 * 18 17 15 34 34 H 1.08000 * 119.86743 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.01702 * 179.97438 * 22 21 20 36 36 H 1.07997 * 120.04494 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4207 -5.2205 11 1 3.8064 -1.1209 -4.0081 12 6 2.0324 -0.7103 1.2305 13 8 2.7270 -1.6927 1.1196 14 8 1.7081 -0.2517 2.4495 15 6 2.2269 -0.9862 3.5897 16 1 2.3351 -2.0420 3.3411 17 6 1.2943 -0.8134 4.8073 18 6 1.9171 0.3986 5.5321 19 6 3.3791 0.3858 5.1407 20 6 3.5573 -0.4099 4.0245 21 6 4.8230 -0.5687 3.4859 22 6 5.9085 0.0643 4.0598 23 6 5.7328 0.8602 5.1756 24 6 4.4690 1.0218 5.7156 25 9 4.2969 1.8003 6.8062 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7089 1.1613 -3.4845 30 1 0.2760 -0.5923 4.4873 31 1 1.3183 -1.6989 5.4424 32 1 1.8135 0.2880 6.6115 33 1 1.4448 1.3232 5.2003 34 1 4.9621 -1.1901 2.6136 35 1 6.8939 -0.0627 3.6366 36 1 6.5805 1.3553 5.6256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893666056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:22 Heat of formation + Delta-G solvation = -114.808796 kcal Electronic energy + Delta-G solvation = -21401.275074 eV Core-core repulsion = 17957.499282 eV Total energy + Delta-G solvation = -3443.775792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.88969 -40.48735 -38.98602 -36.26353 -34.63033 -33.90042 -30.90160 -30.44013 -29.18684 -27.00266 -25.22183 -23.34360 -22.77320 -21.40470 -20.77618 -19.80334 -17.48252 -16.84249 -16.33120 -16.14606 -15.78195 -15.66072 -15.45440 -15.17007 -14.46663 -14.28794 -13.98347 -13.49117 -12.94093 -12.80842 -12.68917 -12.30246 -11.86734 -11.70515 -11.54484 -11.42792 -11.27670 -11.05421 -10.94913 -10.78509 -10.71963 -10.36589 -10.11545 -10.06510 -9.22217 -9.07530 -8.78950 -8.63769 -8.45781 -6.11801 -4.17520 1.06394 1.14888 3.24833 3.27917 3.31504 3.34341 3.40468 3.74924 4.14575 4.28888 4.40563 4.42703 4.80671 4.94383 5.00526 5.18308 5.21547 5.26441 5.44026 5.59285 5.62852 5.79234 5.80410 5.90575 6.05320 6.12045 6.24412 6.31249 6.47953 6.64595 6.84179 6.85240 6.86281 7.19705 7.41867 7.72516 7.92627 8.12380 8.81241 8.91391 9.48034 10.95534 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026156 B = 0.004495 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.227472 B = 6227.098559 C = 6709.312058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.063 0.937 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.465 3.535 13 O -0.515 6.515 14 O -0.349 6.349 15 C 0.120 3.880 16 H 0.094 0.906 17 C -0.113 4.113 18 C -0.076 4.076 19 C -0.117 4.117 20 C -0.086 4.086 21 C -0.094 4.094 22 C -0.097 4.097 23 C -0.148 4.148 24 C 0.100 3.900 25 F -0.143 7.143 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.023 0.977 29 H 0.264 0.736 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.906 -0.325 15.788 16.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.402 6.402 14 O -0.268 6.268 15 C 0.064 3.936 16 H 0.112 0.888 17 C -0.150 4.150 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.087 4.087 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.166 4.166 24 C 0.081 3.919 25 F -0.121 7.121 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.024 -0.486 15.678 16.194 hybrid contribution 0.541 -0.312 -0.648 0.900 sum 4.565 -0.798 15.030 15.729 Atomic orbital electron populations 1.21733 0.95606 1.00041 1.01755 1.18760 0.94868 0.96937 0.85522 0.91908 1.21078 1.32007 1.13232 0.88756 0.90697 1.24934 0.94902 0.95005 0.99116 1.69874 1.36445 1.22751 1.23966 0.86437 0.79275 0.79670 0.81368 1.20089 1.21208 1.20102 1.25413 0.76472 0.83053 0.84098 1.90472 1.36450 1.26726 1.86542 1.86782 1.69402 1.55636 1.14952 1.21886 0.89003 0.96935 0.85757 0.88846 1.22393 0.99903 0.98456 0.94294 1.21013 0.89649 0.99881 1.00726 1.20606 0.95517 0.98245 0.97471 1.20698 0.95026 0.97875 0.95077 1.20962 0.91149 0.99271 0.99835 1.20934 0.99256 0.96256 0.95048 1.21063 0.95527 1.01742 0.98301 1.17246 0.93523 0.94768 0.86402 1.91464 1.96281 1.72662 1.51740 0.88573 0.94963 0.95774 0.92629 0.88632 0.89285 0.90241 0.89200 0.84741 0.84639 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.90 37.16 0.33 -2.79 16 2 C 0.06 1.46 2.74 -92.92 -0.25 1.21 16 3 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 4 C -0.51 -14.21 8.37 -34.44 -0.29 -14.50 16 5 H 0.07 2.15 6.76 -52.49 -0.35 1.80 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.46 10.70 7.24 36.00 0.26 10.96 16 13 O -0.52 -12.59 14.71 -18.75 -0.28 -12.86 16 14 O -0.35 -6.88 9.83 -39.24 -0.39 -7.27 16 15 C 0.12 1.92 3.16 -26.85 -0.08 1.84 16 16 H 0.09 1.55 7.23 -51.93 -0.38 1.17 16 17 C -0.11 -1.35 6.81 -25.32 -0.17 -1.53 16 18 C -0.08 -0.90 6.75 -26.85 -0.18 -1.08 16 19 C -0.12 -1.66 6.12 -104.14 -0.64 -2.30 16 20 C -0.09 -1.35 5.82 -104.21 -0.61 -1.96 16 21 C -0.09 -1.42 10.04 -39.53 -0.40 -1.82 16 22 C -0.10 -1.20 10.04 -39.64 -0.40 -1.60 16 23 C -0.15 -1.78 10.02 -39.55 -0.40 -2.17 16 24 C 0.10 1.35 7.30 -39.37 -0.29 1.06 16 25 F -0.14 -1.91 17.25 2.25 0.04 -1.87 16 26 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.10 1.09 8.11 -51.93 -0.42 0.67 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 312.08 15.07 4.70 4.70 Total: -1.00 -29.63 312.08 -7.93 -37.55 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.40 Total: 0.59 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -3.21 Total: -13.09 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.63 Total: -24.04 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.66 Total: -20.13 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.63 -7.93 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893666056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.255 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds