Wall clock time and date at job start Tue Mar 31 2020 01:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 5 5 H 1.07999 * 119.99515 * 240.00498 * 4 2 1 6 6 C 1.37870 * 120.00176 * 59.99965 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47288 * 59.99994 * 8 6 4 10 10 H 1.48503 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46819 * 299.99648 * 8 6 4 12 12 C 1.50698 * 109.47342 * 119.99730 * 2 1 3 13 13 O 1.20825 * 119.99963 * 119.99623 * 12 2 1 14 14 O 1.34225 * 119.99990 * 300.00183 * 12 2 1 15 15 C 1.45205 * 116.99943 * 179.97438 * 14 12 2 16 16 H 1.08999 * 110.26775 * 329.37479 * 15 14 12 17 17 C 1.54347 * 110.30122 * 207.20216 * 15 14 12 18 18 C 1.54348 * 102.39101 * 267.42373 * 17 15 14 19 19 C 1.51359 * 105.16919 * 333.65381 * 18 17 15 20 20 C 1.38225 * 109.76760 * 17.18792 * 19 18 17 21 21 C 1.38467 * 119.86726 * 179.97438 * 20 19 18 22 22 C 1.38150 * 120.26616 * 0.02804 * 21 20 19 23 23 C 1.38177 * 119.96777 * 359.97438 * 22 21 20 24 24 C 1.38374 * 119.90374 * 359.97438 * 23 22 21 25 25 F 1.35095 * 119.91714 * 180.02562 * 24 23 22 26 26 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 27 27 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 30 30 H 1.09005 * 110.82522 * 25.65010 * 17 15 14 31 31 H 1.08997 * 110.82153 * 149.19870 * 17 15 14 32 32 H 1.08997 * 110.30225 * 214.72592 * 18 17 15 33 33 H 1.08998 * 110.38484 * 92.61981 * 18 17 15 34 34 H 1.08000 * 119.86743 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.01702 * 179.97438 * 22 21 20 36 36 H 1.07997 * 120.04494 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4207 -5.2205 11 1 3.8064 -1.1209 -4.0081 12 6 2.0324 -0.7103 1.2305 13 8 2.7270 -1.6927 1.1196 14 8 1.7081 -0.2517 2.4495 15 6 2.2269 -0.9862 3.5897 16 1 2.3351 -2.0420 3.3411 17 6 1.2943 -0.8134 4.8073 18 6 1.9171 0.3986 5.5321 19 6 3.3791 0.3858 5.1407 20 6 3.5573 -0.4099 4.0245 21 6 4.8230 -0.5687 3.4859 22 6 5.9085 0.0643 4.0598 23 6 5.7328 0.8602 5.1756 24 6 4.4690 1.0218 5.7156 25 9 4.2969 1.8003 6.8062 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7089 1.1613 -3.4845 30 1 0.2760 -0.5923 4.4873 31 1 1.3183 -1.6989 5.4424 32 1 1.8135 0.2880 6.6115 33 1 1.4448 1.3232 5.2003 34 1 4.9621 -1.1901 2.6136 35 1 6.8939 -0.0627 3.6366 36 1 6.5805 1.3553 5.6256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893666056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:22 Heat of formation + Delta-G solvation = -128.827528 kcal Electronic energy + Delta-G solvation = -21401.882972 eV Core-core repulsion = 17957.499282 eV Total energy + Delta-G solvation = -3444.383690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.92006 -41.85316 -40.43337 -37.69249 -35.92539 -35.91600 -32.68888 -31.75899 -30.21304 -28.15369 -27.28023 -25.11766 -23.82893 -22.56679 -22.01448 -21.41813 -18.83122 -18.36790 -18.16516 -17.43392 -17.31028 -16.78086 -16.74833 -16.67754 -16.04953 -15.48391 -15.09148 -14.89189 -14.54516 -14.35191 -13.97221 -13.52967 -13.45664 -13.02884 -12.96454 -12.85310 -12.70049 -12.61238 -12.38563 -12.32424 -12.27327 -12.04459 -12.02754 -11.56867 -11.12502 -11.02227 -10.53774 -9.91337 -9.68778 -8.20023 -6.33479 -0.02239 0.09484 1.42151 1.42953 1.45462 1.52146 1.89770 2.41971 2.56836 3.09600 3.10382 3.23097 3.36287 3.83768 3.86149 3.97707 4.11369 4.16182 4.32617 4.50384 4.56850 4.65121 4.68459 4.82289 4.88209 4.89858 4.97731 5.05336 5.07022 5.11582 5.25710 5.36453 5.40355 5.52468 5.69187 5.81719 5.88564 6.10090 6.72676 7.04841 7.35349 8.86248 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026156 B = 0.004495 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.227472 B = 6227.098559 C = 6709.312058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 H 0.045 0.955 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.274 1.274 12 C 0.473 3.527 13 O -0.536 6.536 14 O -0.348 6.348 15 C 0.108 3.892 16 H 0.081 0.919 17 C -0.103 4.103 18 C -0.075 4.075 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.093 4.093 23 C -0.137 4.137 24 C 0.090 3.910 25 F -0.141 7.141 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.268 0.732 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.164 0.836 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.283 -0.053 17.106 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.031 3.969 3 H 0.063 0.937 4 C -0.575 4.575 5 H 0.075 0.925 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.788 3.212 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.318 3.682 13 O -0.425 6.425 14 O -0.266 6.266 15 C 0.054 3.946 16 H 0.099 0.901 17 C -0.140 4.140 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.134 4.134 22 C -0.110 4.110 23 C -0.156 4.156 24 C 0.071 3.929 25 F -0.119 7.119 26 H 0.095 0.905 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.181 0.819 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.389 -0.199 17.020 17.578 hybrid contribution 0.482 -0.362 -0.956 1.130 sum 4.870 -0.562 16.064 16.796 Atomic orbital electron populations 1.21558 0.94282 0.99987 1.01999 1.18665 0.96008 0.95867 0.86327 0.93741 1.21209 1.32653 1.13261 0.90412 0.92469 1.25641 0.94894 0.95638 1.01573 1.69962 1.36649 1.23387 1.24780 0.85532 0.78696 0.78705 0.78261 1.19806 1.19932 1.19954 1.24826 0.76029 0.82459 0.84898 1.90452 1.37299 1.27619 1.87179 1.86707 1.69193 1.55869 1.14809 1.22348 0.90889 0.95883 0.85503 0.90065 1.22491 0.99194 0.99879 0.92458 1.21094 0.88121 0.99670 1.02256 1.20841 0.96917 0.97669 0.96898 1.20741 0.94853 0.99504 0.96379 1.21048 0.92300 1.00164 0.99884 1.21224 0.99642 0.95303 0.94881 1.21434 0.96029 1.00631 0.97468 1.17432 0.93998 0.94872 0.86598 1.91470 1.96319 1.72565 1.51588 0.90481 0.95045 0.93222 0.92276 0.87830 0.86491 0.87639 0.89263 0.86778 0.81864 0.81421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.90 71.98 0.64 -5.04 16 2 C 0.05 2.60 2.74 -12.29 -0.03 2.57 16 3 H 0.04 2.44 8.14 -2.39 -0.02 2.42 16 4 C -0.54 -30.54 8.37 25.60 0.21 -30.32 16 5 H 0.06 3.39 6.76 -2.91 -0.02 3.37 16 6 C 0.02 1.24 5.30 84.65 0.45 1.68 16 7 N -0.91 -50.62 11.32 21.45 0.24 -50.37 16 8 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 C 0.47 22.33 7.24 71.24 0.52 22.85 16 13 O -0.54 -27.18 14.71 21.97 0.32 -26.85 16 14 O -0.35 -13.83 9.83 -51.37 -0.51 -14.34 16 15 C 0.11 3.48 3.16 30.52 0.10 3.57 16 16 H 0.08 2.76 7.23 -2.39 -0.02 2.75 16 17 C -0.10 -2.27 6.81 31.51 0.21 -2.06 16 18 C -0.07 -1.61 6.75 30.52 0.21 -1.41 16 19 C -0.12 -3.28 6.12 -19.55 -0.12 -3.40 16 20 C -0.11 -3.56 5.82 -19.60 -0.11 -3.67 16 21 C -0.12 -3.53 10.04 22.30 0.22 -3.30 16 22 C -0.09 -2.16 10.04 22.23 0.22 -1.94 16 23 C -0.14 -2.95 10.02 22.29 0.22 -2.73 16 24 C 0.09 2.25 7.30 22.41 0.16 2.41 16 25 F -0.14 -3.40 17.25 44.97 0.78 -2.63 16 26 H 0.08 3.94 6.07 -2.39 -0.01 3.92 16 27 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 2.02 8.11 -2.39 -0.02 2.00 16 29 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.10 2.13 8.11 -2.38 -0.02 2.11 16 31 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.11 3.87 8.06 -2.91 -0.02 3.84 16 35 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -64.39 312.08 6.86 -57.53 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.09 Total: 11.67 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 2.90 Total: -20.79 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.24 Total: -50.37 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.18 Total: -41.19 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -64.39 6.86 -57.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893666056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.293 kcal (2) G-P(sol) polarization free energy of solvation -64.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds