Wall clock time and date at job start Tue Mar 31 2020 01:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46828 * 2 1 4 4 C 1.50693 * 109.47354 * 119.99897 * 2 1 3 5 5 H 1.07997 * 120.00072 * 119.99930 * 4 2 1 6 6 C 1.37886 * 120.00075 * 300.00323 * 4 2 1 7 7 N 1.31514 * 119.99860 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99857 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46867 * 90.00338 * 8 6 4 10 10 H 1.48503 * 109.46903 * 210.00005 * 8 6 4 11 11 H 1.48499 * 109.47206 * 330.00034 * 8 6 4 12 12 C 1.50697 * 109.47194 * 240.00529 * 2 1 3 13 13 O 1.20833 * 119.99747 * 240.00031 * 12 2 1 14 14 O 1.34230 * 120.00262 * 59.71653 * 12 2 1 15 15 C 1.45202 * 116.99836 * 180.27336 * 14 12 2 16 16 H 1.09001 * 110.26917 * 330.70878 * 15 14 12 17 17 C 1.54342 * 110.30132 * 208.62962 * 15 14 12 18 18 C 1.54605 * 102.27642 * 267.39645 * 17 15 14 19 19 C 1.51368 * 105.18525 * 333.64641 * 18 17 15 20 20 C 1.38225 * 109.76497 * 17.19985 * 19 18 17 21 21 C 1.38468 * 119.86275 * 179.97438 * 20 19 18 22 22 C 1.38148 * 120.27146 * 0.02812 * 21 20 19 23 23 C 1.38178 * 119.96453 * 359.97226 * 22 21 20 24 24 C 1.38371 * 119.90481 * 0.02562 * 23 22 21 25 25 F 1.35098 * 119.92056 * 180.02562 * 24 23 22 26 26 H 1.09001 * 109.47378 * 60.00060 * 1 2 3 27 27 H 1.09004 * 109.46828 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47167 * 299.99666 * 1 2 3 29 29 H 0.96996 * 119.99508 * 179.97438 * 7 6 4 30 30 H 1.08995 * 110.82502 * 25.65852 * 17 15 14 31 31 H 1.09006 * 110.82033 * 149.20305 * 17 15 14 32 32 H 1.08994 * 110.28643 * 214.72069 * 18 17 15 33 33 H 1.09002 * 110.38915 * 92.62047 * 18 17 15 34 34 H 1.08002 * 119.86262 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.01885 * 179.97438 * 22 21 20 36 36 H 1.07997 * 120.04657 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6297 -0.5457 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4861 -2.5662 3.7119 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6927 -1.1197 14 8 1.7035 -0.2549 -2.4496 15 6 2.2180 -0.9925 -3.5897 16 1 3.1666 -1.4659 -3.3363 17 6 2.3954 -0.0517 -4.8003 18 6 1.0450 -0.2060 -5.5371 19 6 0.5407 -1.5816 -5.1568 20 6 1.2146 -2.0336 -4.0378 21 6 0.9149 -3.2773 -3.5080 22 6 -0.0545 -4.0685 -4.0936 23 6 -0.7294 -3.6186 -5.2123 24 6 -0.4323 -2.3762 -5.7441 25 9 -1.0924 -1.9359 -6.8375 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7081 1.1607 3.4844 30 1 2.5445 0.9772 -4.4729 31 1 3.2211 -0.3825 -5.4303 32 1 1.1932 -0.1422 -6.6151 33 1 0.3424 0.5591 -5.2066 34 1 1.4411 -3.6303 -2.6335 35 1 -0.2847 -5.0381 -3.6773 36 1 -1.4872 -4.2362 -5.6714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893666059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:24 Heat of formation + Delta-G solvation = -114.773482 kcal Electronic energy + Delta-G solvation = -21472.626138 eV Core-core repulsion = 18028.851878 eV Total energy + Delta-G solvation = -3443.774260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.88683 -40.47932 -38.98648 -36.25887 -34.62233 -33.90027 -30.89171 -30.45222 -29.17758 -26.99709 -25.21877 -23.34954 -22.76364 -21.42179 -20.76590 -19.79511 -17.46528 -16.89562 -16.37681 -16.11477 -15.75257 -15.65784 -15.42901 -15.16069 -14.45833 -14.27564 -13.89566 -13.64858 -12.96239 -12.86172 -12.44149 -12.40455 -11.94384 -11.70836 -11.46394 -11.44317 -11.27815 -11.06347 -10.91229 -10.79958 -10.72876 -10.36925 -10.09481 -10.07081 -9.22677 -9.06496 -8.78651 -8.63542 -8.46208 -6.12109 -4.17666 1.06729 1.15142 3.22811 3.29126 3.30086 3.35014 3.42142 3.75060 4.14442 4.29033 4.40580 4.42872 4.80743 4.94116 5.00762 5.18436 5.21301 5.26578 5.43873 5.58995 5.62978 5.79045 5.80424 5.90638 6.05420 6.12088 6.24367 6.31308 6.48096 6.65070 6.84700 6.86097 6.87349 7.19645 7.41920 7.72641 7.92719 8.12307 8.81178 8.91555 9.47926 10.95282 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027320 B = 0.004478 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.642184 B = 6250.808377 C = 6532.627497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 H 0.064 0.936 4 C -0.512 4.512 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.465 3.535 13 O -0.515 6.515 14 O -0.349 6.349 15 C 0.119 3.881 16 H 0.094 0.906 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.117 4.117 20 C -0.085 4.085 21 C -0.094 4.094 22 C -0.097 4.097 23 C -0.148 4.148 24 C 0.100 3.900 25 F -0.143 7.143 26 H 0.023 0.977 27 H 0.030 0.970 28 H 0.096 0.904 29 H 0.263 0.737 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -4.094 -15.826 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.550 4.550 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.402 6.402 14 O -0.268 6.268 15 C 0.063 3.937 16 H 0.112 0.888 17 C -0.151 4.151 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.085 4.085 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.166 4.166 24 C 0.081 3.919 25 F -0.122 7.122 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.402 -4.266 -15.719 16.348 hybrid contribution 0.126 -0.580 0.651 0.881 sum -1.276 -4.847 -15.068 15.879 Atomic orbital electron populations 1.21724 0.95593 1.00018 1.01696 1.18765 0.94828 0.96970 0.85525 0.91864 1.21120 1.31902 1.13247 0.88742 0.90642 1.24939 0.94884 0.95027 0.99128 1.69879 1.36417 1.22862 1.23864 0.86384 0.78506 0.80155 0.81785 1.20518 1.21133 1.19693 1.25427 0.76225 0.83298 0.84115 1.90476 1.36454 1.26742 1.86522 1.86785 1.70370 1.54650 1.14952 1.21890 0.95769 0.90273 0.85741 0.88806 1.22443 0.97205 1.01081 0.94342 1.21054 0.96884 0.92619 1.00705 1.20600 0.96492 0.97344 0.97391 1.20678 0.98062 0.94766 0.95028 1.20946 0.97337 0.93100 0.99827 1.20928 0.95435 1.00132 0.94983 1.21059 1.02245 0.94996 0.98336 1.17245 0.94420 0.93986 0.86276 1.91465 1.79475 1.89683 1.51529 0.95838 0.95057 0.88563 0.92685 0.88643 0.89280 0.90257 0.89202 0.84814 0.84652 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.90 37.16 0.33 -2.82 16 2 C 0.06 1.46 2.74 -92.93 -0.25 1.21 16 3 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 4 C -0.51 -14.19 8.37 -34.44 -0.29 -14.48 16 5 H 0.08 2.17 6.76 -52.49 -0.35 1.82 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.03 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.46 10.69 7.25 36.00 0.26 10.95 16 13 O -0.52 -12.61 14.69 -18.76 -0.28 -12.88 16 14 O -0.35 -6.88 9.82 -39.26 -0.39 -7.26 16 15 C 0.12 1.91 3.18 -26.85 -0.09 1.82 16 16 H 0.09 1.55 7.19 -51.93 -0.37 1.18 16 17 C -0.11 -1.35 6.83 -25.18 -0.17 -1.53 16 18 C -0.08 -0.90 6.76 -26.71 -0.18 -1.08 16 19 C -0.12 -1.66 6.12 -104.14 -0.64 -2.30 16 20 C -0.08 -1.33 5.82 -104.21 -0.61 -1.94 16 21 C -0.09 -1.42 10.04 -39.53 -0.40 -1.82 16 22 C -0.10 -1.20 10.04 -39.64 -0.40 -1.60 16 23 C -0.15 -1.78 10.02 -39.55 -0.40 -2.18 16 24 C 0.10 1.35 7.30 -39.37 -0.29 1.07 16 25 F -0.14 -1.91 17.25 2.25 0.04 -1.87 16 26 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.10 1.08 8.11 -51.93 -0.42 0.66 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -29.68 312.06 -7.92 -37.60 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.40 Total: 0.58 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -3.21 Total: -13.10 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.63 Total: -24.03 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.66 Total: -20.14 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.68 -7.92 -37.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893666059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.170 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds