Wall clock time and date at job start Tue Mar 31 2020 01:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46828 * 2 1 4 4 C 1.50693 * 109.47354 * 119.99897 * 2 1 3 5 5 H 1.07997 * 120.00072 * 119.99930 * 4 2 1 6 6 C 1.37886 * 120.00075 * 300.00323 * 4 2 1 7 7 N 1.31514 * 119.99860 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99857 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46867 * 90.00338 * 8 6 4 10 10 H 1.48503 * 109.46903 * 210.00005 * 8 6 4 11 11 H 1.48499 * 109.47206 * 330.00034 * 8 6 4 12 12 C 1.50697 * 109.47194 * 240.00529 * 2 1 3 13 13 O 1.20833 * 119.99747 * 240.00031 * 12 2 1 14 14 O 1.34230 * 120.00262 * 59.71653 * 12 2 1 15 15 C 1.45202 * 116.99836 * 180.27336 * 14 12 2 16 16 H 1.09001 * 110.26917 * 330.70878 * 15 14 12 17 17 C 1.54342 * 110.30132 * 208.62962 * 15 14 12 18 18 C 1.54605 * 102.27642 * 267.39645 * 17 15 14 19 19 C 1.51368 * 105.18525 * 333.64641 * 18 17 15 20 20 C 1.38225 * 109.76497 * 17.19985 * 19 18 17 21 21 C 1.38468 * 119.86275 * 179.97438 * 20 19 18 22 22 C 1.38148 * 120.27146 * 0.02812 * 21 20 19 23 23 C 1.38178 * 119.96453 * 359.97226 * 22 21 20 24 24 C 1.38371 * 119.90481 * 0.02562 * 23 22 21 25 25 F 1.35098 * 119.92056 * 180.02562 * 24 23 22 26 26 H 1.09001 * 109.47378 * 60.00060 * 1 2 3 27 27 H 1.09004 * 109.46828 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47167 * 299.99666 * 1 2 3 29 29 H 0.96996 * 119.99508 * 179.97438 * 7 6 4 30 30 H 1.08995 * 110.82502 * 25.65852 * 17 15 14 31 31 H 1.09006 * 110.82033 * 149.20305 * 17 15 14 32 32 H 1.08994 * 110.28643 * 214.72069 * 18 17 15 33 33 H 1.09002 * 110.38915 * 92.62047 * 18 17 15 34 34 H 1.08002 * 119.86262 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.01885 * 179.97438 * 22 21 20 36 36 H 1.07997 * 120.04657 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6297 -0.5457 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4861 -2.5662 3.7119 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6927 -1.1197 14 8 1.7035 -0.2549 -2.4496 15 6 2.2180 -0.9925 -3.5897 16 1 3.1666 -1.4659 -3.3363 17 6 2.3954 -0.0517 -4.8003 18 6 1.0450 -0.2060 -5.5371 19 6 0.5407 -1.5816 -5.1568 20 6 1.2146 -2.0336 -4.0378 21 6 0.9149 -3.2773 -3.5080 22 6 -0.0545 -4.0685 -4.0936 23 6 -0.7294 -3.6186 -5.2123 24 6 -0.4323 -2.3762 -5.7441 25 9 -1.0924 -1.9359 -6.8375 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7081 1.1607 3.4844 30 1 2.5445 0.9772 -4.4729 31 1 3.2211 -0.3825 -5.4303 32 1 1.1932 -0.1422 -6.6151 33 1 0.3424 0.5591 -5.2066 34 1 1.4411 -3.6303 -2.6335 35 1 -0.2847 -5.0381 -3.6773 36 1 -1.4872 -4.2362 -5.6714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893666059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:24 Heat of formation + Delta-G solvation = -128.799322 kcal Electronic energy + Delta-G solvation = -21473.234344 eV Core-core repulsion = 18028.851878 eV Total energy + Delta-G solvation = -3444.382466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.91413 -41.84807 -40.43127 -37.69112 -35.92872 -35.90846 -32.69144 -31.76231 -30.20310 -28.14757 -27.29075 -25.13025 -23.82295 -22.58652 -21.99557 -21.41361 -18.78140 -18.49939 -18.16895 -17.39016 -17.23252 -16.79944 -16.74169 -16.67585 -16.04151 -15.47625 -15.04924 -14.98745 -14.68372 -14.16832 -13.90467 -13.71594 -13.38811 -13.02131 -12.99352 -12.79180 -12.73255 -12.63451 -12.39695 -12.30919 -12.28848 -12.05179 -12.02602 -11.56014 -11.12457 -11.03666 -10.54012 -9.90675 -9.68214 -8.20407 -6.33616 -0.01619 0.10102 1.41150 1.42698 1.44557 1.54031 1.89996 2.42009 2.57326 3.09177 3.10628 3.23403 3.36718 3.83742 3.86308 3.97958 4.11369 4.16072 4.33053 4.49892 4.56622 4.65692 4.66149 4.82338 4.87762 4.88731 4.95462 5.05652 5.06883 5.11573 5.26123 5.36380 5.39656 5.51737 5.68679 5.82216 5.86719 6.09113 6.72843 7.04527 7.35251 8.86163 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027320 B = 0.004478 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.642184 B = 6250.808377 C = 6532.627497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.050 3.950 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.963 3.037 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.472 3.528 13 O -0.537 6.537 14 O -0.348 6.348 15 C 0.107 3.893 16 H 0.081 0.919 17 C -0.104 4.104 18 C -0.075 4.075 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.092 4.092 23 C -0.137 4.137 24 C 0.090 3.910 25 F -0.141 7.141 26 H 0.044 0.956 27 H 0.025 0.975 28 H 0.078 0.922 29 H 0.268 0.732 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.164 0.836 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 -4.516 -17.104 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.031 3.969 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.075 0.925 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.788 3.212 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.318 3.682 13 O -0.426 6.426 14 O -0.266 6.266 15 C 0.053 3.947 16 H 0.099 0.901 17 C -0.141 4.141 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.110 4.110 23 C -0.156 4.156 24 C 0.071 3.929 25 F -0.120 7.120 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.181 0.819 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.056 -4.669 -17.020 17.768 hybrid contribution 0.299 -0.474 0.947 1.101 sum -1.757 -5.143 -16.073 16.967 Atomic orbital electron populations 1.21536 0.94637 0.99641 1.01785 1.18671 0.95644 0.96210 0.86325 0.93166 1.21235 1.32562 1.13258 0.90391 0.92483 1.25643 0.94871 0.95653 1.01575 1.69960 1.36602 1.23483 1.24738 0.85473 0.78388 0.78769 0.78548 1.19791 1.19936 1.20007 1.24841 0.75808 0.82664 0.84919 1.90456 1.37396 1.27575 1.87163 1.86709 1.70125 1.54918 1.14812 1.22351 0.95350 0.91561 0.85461 0.90068 1.22541 0.98464 1.00524 0.92549 1.21132 0.96468 0.91309 1.02218 1.20828 0.96351 0.98297 0.96819 1.20709 0.99126 0.95130 0.96317 1.21031 0.98579 0.93858 0.99879 1.21217 0.94189 1.00809 0.94791 1.21429 1.02000 0.94597 0.97525 1.17429 0.94449 0.94534 0.86461 1.91471 1.79363 1.89742 1.51382 0.93711 0.95542 0.90320 0.92267 0.87902 0.86503 0.87672 0.89260 0.86838 0.81873 0.81436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.90 71.98 0.64 -5.05 16 2 C 0.05 2.61 2.74 -12.29 -0.03 2.58 16 3 H 0.05 2.70 8.14 -2.38 -0.02 2.68 16 4 C -0.54 -30.46 8.37 25.60 0.21 -30.24 16 5 H 0.06 3.39 6.76 -2.91 -0.02 3.37 16 6 C 0.02 1.23 5.30 84.66 0.45 1.68 16 7 N -0.91 -50.51 11.32 21.45 0.24 -50.27 16 8 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.47 22.32 7.25 71.23 0.52 22.84 16 13 O -0.54 -27.24 14.69 21.94 0.32 -26.92 16 14 O -0.35 -13.84 9.82 -51.41 -0.51 -14.34 16 15 C 0.11 3.45 3.18 30.52 0.10 3.54 16 16 H 0.08 2.77 7.19 -2.39 -0.02 2.75 16 17 C -0.10 -2.29 6.83 31.60 0.22 -2.08 16 18 C -0.07 -1.61 6.76 30.61 0.21 -1.40 16 19 C -0.12 -3.26 6.12 -19.55 -0.12 -3.38 16 20 C -0.11 -3.48 5.82 -19.60 -0.11 -3.60 16 21 C -0.12 -3.49 10.04 22.30 0.22 -3.27 16 22 C -0.09 -2.14 10.04 22.23 0.22 -1.91 16 23 C -0.14 -2.93 10.02 22.29 0.22 -2.71 16 24 C 0.09 2.24 7.30 22.41 0.16 2.41 16 25 F -0.14 -3.40 17.25 44.97 0.78 -2.62 16 26 H 0.04 1.90 8.11 -2.39 -0.02 1.88 16 27 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.08 4.07 6.07 -2.39 -0.01 4.05 16 29 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.10 2.13 8.11 -2.39 -0.02 2.11 16 31 H 0.12 1.94 8.14 -2.38 -0.02 1.93 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.11 3.83 8.06 -2.91 -0.02 3.80 16 35 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -64.28 312.06 6.86 -57.42 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.09 Total: 11.57 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 2.91 Total: -20.59 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.24 Total: -50.27 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.18 Total: -41.26 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -64.28 6.86 -57.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893666059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.378 kcal (2) G-P(sol) polarization free energy of solvation -64.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds