Wall clock time and date at job start Tue Mar 31 2020 01:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.47185 * 2 1 4 4 C 1.50694 * 109.47220 * 240.00066 * 2 1 3 5 5 H 1.07997 * 119.99979 * 239.99534 * 4 2 1 6 6 C 1.37875 * 120.00175 * 59.99984 * 4 2 1 7 7 N 1.31518 * 120.00192 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00178 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46973 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46871 * 119.99946 * 8 6 4 11 11 H 1.48496 * 109.47228 * 239.99877 * 8 6 4 12 12 C 1.50694 * 109.47122 * 119.99744 * 2 1 3 13 13 O 1.20824 * 120.00310 * 120.00095 * 12 2 1 14 14 O 1.34229 * 120.00237 * 300.00151 * 12 2 1 15 15 C 1.45204 * 117.00047 * 179.97438 * 14 12 2 16 16 H 1.08993 * 110.34795 * 30.67176 * 15 14 12 17 17 C 1.54348 * 110.29937 * 152.80031 * 15 14 12 18 18 C 1.54346 * 102.39213 * 145.27223 * 17 15 14 19 19 C 1.51361 * 105.16793 * 333.64938 * 18 17 15 20 20 C 1.38219 * 109.76722 * 17.19110 * 19 18 17 21 21 C 1.38468 * 119.86936 * 179.97438 * 20 19 18 22 22 C 1.38157 * 120.26475 * 0.06707 * 21 20 19 23 23 C 1.38170 * 119.96916 * 359.93372 * 22 21 20 24 24 C 1.38375 * 119.90297 * 0.03358 * 23 22 21 25 25 F 1.35093 * 119.92421 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47382 * 300.00154 * 1 2 3 28 28 H 1.09000 * 109.46974 * 59.99853 * 1 2 3 29 29 H 0.96994 * 120.00507 * 180.02562 * 7 6 4 30 30 H 1.09006 * 110.82089 * 263.49392 * 17 15 14 31 31 H 1.08993 * 110.82787 * 27.04637 * 17 15 14 32 32 H 1.09001 * 110.30724 * 214.72470 * 18 17 15 33 33 H 1.09008 * 110.30494 * 92.57054 * 18 17 15 34 34 H 1.07996 * 119.87166 * 179.97438 * 21 20 19 35 35 H 1.08009 * 120.01853 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.05296 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2862 -3.6037 10 1 1.1679 -1.5866 -4.8164 11 1 3.1473 -0.1857 -4.8160 12 6 2.0323 -0.7103 1.2304 13 8 2.7270 -1.6927 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2268 -0.9863 3.5897 16 1 3.1862 -1.4408 3.3430 17 6 2.3750 -0.0498 4.8076 18 6 2.0330 -0.9842 5.9875 19 6 1.1277 -2.0465 5.4019 20 6 1.2389 -2.0478 4.0242 21 6 0.4969 -2.9439 3.2733 22 6 -0.3552 -3.8357 3.8956 23 6 -0.4680 -3.8362 5.2727 24 6 0.2726 -2.9424 6.0259 25 9 0.1623 -2.9422 7.3723 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7089 1.1614 -3.4844 30 1 3.3971 0.3200 4.8899 31 1 1.6664 0.7764 4.7497 32 1 1.5114 -0.4314 6.7688 33 1 2.9405 -1.4382 6.3858 34 1 0.5835 -2.9447 2.1968 35 1 -0.9324 -4.5327 3.3060 36 1 -1.1334 -4.5331 5.7606 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893672189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:27 Heat of formation + Delta-G solvation = -115.810547 kcal Electronic energy + Delta-G solvation = -21420.194168 eV Core-core repulsion = 17976.374937 eV Total energy + Delta-G solvation = -3443.819231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.91843 -40.49770 -39.02134 -36.24670 -34.80697 -33.91307 -30.86052 -30.44581 -29.20173 -27.00284 -25.23177 -23.27159 -22.81036 -21.46509 -20.78287 -19.78819 -17.49970 -16.96150 -16.40786 -16.16177 -15.75538 -15.70205 -15.43113 -15.26592 -14.52373 -14.25558 -13.82480 -13.51435 -13.00264 -12.80932 -12.45658 -12.21476 -12.05025 -12.02289 -11.67925 -11.45994 -11.28384 -11.08743 -10.95105 -10.79212 -10.73193 -10.39024 -10.09327 -10.07446 -9.18571 -9.06379 -8.76597 -8.65085 -8.47848 -6.13241 -4.18867 1.09039 1.13671 3.22586 3.27151 3.30796 3.35185 3.43592 3.67475 4.11267 4.25290 4.38406 4.41132 4.79465 4.92152 5.05519 5.09639 5.20260 5.25865 5.40029 5.49312 5.58755 5.75147 5.78967 5.89134 6.04142 6.07749 6.22743 6.31987 6.48672 6.63260 6.83554 6.84410 6.85721 7.18201 7.40255 7.71387 7.91766 8.11016 8.79726 8.90820 9.47057 10.94154 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.004339 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.858319 B = 6451.999153 C = 6835.521696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.512 4.512 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.463 3.537 13 O -0.514 6.514 14 O -0.352 6.352 15 C 0.120 3.880 16 H 0.100 0.900 17 C -0.112 4.112 18 C -0.074 4.074 19 C -0.130 4.130 20 C -0.077 4.077 21 C -0.094 4.094 22 C -0.092 4.092 23 C -0.152 4.152 24 C 0.103 3.897 25 F -0.143 7.143 26 H 0.030 0.970 27 H 0.023 0.977 28 H 0.096 0.904 29 H 0.263 0.737 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 -4.096 15.738 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.550 4.550 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.308 3.692 13 O -0.401 6.401 14 O -0.270 6.270 15 C 0.064 3.936 16 H 0.118 0.882 17 C -0.149 4.149 18 C -0.111 4.111 19 C -0.131 4.131 20 C -0.078 4.078 21 C -0.113 4.113 22 C -0.110 4.110 23 C -0.171 4.171 24 C 0.084 3.916 25 F -0.122 7.122 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.424 -4.288 15.643 16.282 hybrid contribution 0.264 -0.651 -0.614 0.933 sum -1.160 -4.938 15.028 15.861 Atomic orbital electron populations 1.21728 0.95568 1.00002 1.01764 1.18777 0.94867 0.97008 0.85552 0.91822 1.21165 1.31867 1.13243 0.88736 0.90570 1.24935 0.94891 0.95000 0.99134 1.69886 1.36542 1.22798 1.23781 0.86342 0.78674 0.79729 0.82204 1.19513 1.20888 1.20878 1.25430 0.76370 0.83286 0.84159 1.90500 1.36311 1.26702 1.86558 1.86785 1.70141 1.54970 1.15081 1.22082 0.95909 0.90142 0.85439 0.88229 1.22427 1.03481 0.98027 0.90990 1.20961 0.98074 0.94022 0.98010 1.20438 0.98942 0.98759 0.94924 1.20691 0.97345 0.96712 0.93015 1.20878 0.95192 0.94125 1.01071 1.20942 0.98073 0.98488 0.93469 1.21041 1.01434 1.00002 0.94586 1.17218 0.99338 0.98360 0.76661 1.91461 1.95144 1.95935 1.29629 0.95049 0.95771 0.88562 0.92729 0.89325 0.89012 0.89885 0.89581 0.85078 0.84590 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.90 37.16 0.33 -2.76 16 2 C 0.06 1.42 2.74 -92.93 -0.25 1.16 16 3 H 0.06 1.64 8.14 -51.92 -0.42 1.22 16 4 C -0.51 -14.08 8.37 -34.44 -0.29 -14.37 16 5 H 0.08 2.19 6.76 -52.49 -0.35 1.83 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.48 11.32 55.43 0.63 -23.85 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.46 10.53 6.91 36.00 0.25 10.78 16 13 O -0.51 -12.57 14.66 -18.75 -0.27 -12.84 16 14 O -0.35 -6.86 9.83 -39.26 -0.39 -7.24 16 15 C 0.12 1.93 3.16 -26.84 -0.08 1.84 16 16 H 0.10 1.67 7.24 -51.93 -0.38 1.29 16 17 C -0.11 -1.34 6.81 -25.32 -0.17 -1.51 16 18 C -0.07 -0.81 6.75 -26.85 -0.18 -0.99 16 19 C -0.13 -1.78 6.12 -104.14 -0.64 -2.42 16 20 C -0.08 -1.21 5.82 -104.21 -0.61 -1.82 16 21 C -0.09 -1.49 9.99 -39.53 -0.39 -1.88 16 22 C -0.09 -1.17 10.04 -39.64 -0.40 -1.57 16 23 C -0.15 -1.82 10.02 -39.56 -0.40 -2.22 16 24 C 0.10 1.37 7.30 -39.37 -0.29 1.08 16 25 F -0.14 -1.85 17.25 2.25 0.04 -1.81 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 28 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.13 2.30 7.70 -52.49 -0.40 1.90 16 35 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -29.42 311.31 -7.93 -37.35 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.39 Total: 0.66 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -3.22 Total: -13.10 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.63 Total: -23.85 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.66 Total: -20.09 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.42 -7.93 -37.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893672189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.463 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds