Wall clock time and date at job start Tue Mar 31 2020 01:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.47185 * 2 1 4 4 C 1.50694 * 109.47220 * 240.00066 * 2 1 3 5 5 H 1.07997 * 119.99979 * 239.99534 * 4 2 1 6 6 C 1.37875 * 120.00175 * 59.99984 * 4 2 1 7 7 N 1.31518 * 120.00192 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00178 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46973 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46871 * 119.99946 * 8 6 4 11 11 H 1.48496 * 109.47228 * 239.99877 * 8 6 4 12 12 C 1.50694 * 109.47122 * 119.99744 * 2 1 3 13 13 O 1.20824 * 120.00310 * 120.00095 * 12 2 1 14 14 O 1.34229 * 120.00237 * 300.00151 * 12 2 1 15 15 C 1.45204 * 117.00047 * 179.97438 * 14 12 2 16 16 H 1.08993 * 110.34795 * 30.67176 * 15 14 12 17 17 C 1.54348 * 110.29937 * 152.80031 * 15 14 12 18 18 C 1.54346 * 102.39213 * 145.27223 * 17 15 14 19 19 C 1.51361 * 105.16793 * 333.64938 * 18 17 15 20 20 C 1.38219 * 109.76722 * 17.19110 * 19 18 17 21 21 C 1.38468 * 119.86936 * 179.97438 * 20 19 18 22 22 C 1.38157 * 120.26475 * 0.06707 * 21 20 19 23 23 C 1.38170 * 119.96916 * 359.93372 * 22 21 20 24 24 C 1.38375 * 119.90297 * 0.03358 * 23 22 21 25 25 F 1.35093 * 119.92421 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47382 * 300.00154 * 1 2 3 28 28 H 1.09000 * 109.46974 * 59.99853 * 1 2 3 29 29 H 0.96994 * 120.00507 * 180.02562 * 7 6 4 30 30 H 1.09006 * 110.82089 * 263.49392 * 17 15 14 31 31 H 1.08993 * 110.82787 * 27.04637 * 17 15 14 32 32 H 1.09001 * 110.30724 * 214.72470 * 18 17 15 33 33 H 1.09008 * 110.30494 * 92.57054 * 18 17 15 34 34 H 1.07996 * 119.87166 * 179.97438 * 21 20 19 35 35 H 1.08009 * 120.01853 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.05296 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2862 -3.6037 10 1 1.1679 -1.5866 -4.8164 11 1 3.1473 -0.1857 -4.8160 12 6 2.0323 -0.7103 1.2304 13 8 2.7270 -1.6927 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2268 -0.9863 3.5897 16 1 3.1862 -1.4408 3.3430 17 6 2.3750 -0.0498 4.8076 18 6 2.0330 -0.9842 5.9875 19 6 1.1277 -2.0465 5.4019 20 6 1.2389 -2.0478 4.0242 21 6 0.4969 -2.9439 3.2733 22 6 -0.3552 -3.8357 3.8956 23 6 -0.4680 -3.8362 5.2727 24 6 0.2726 -2.9424 6.0259 25 9 0.1623 -2.9422 7.3723 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7089 1.1614 -3.4844 30 1 3.3971 0.3200 4.8899 31 1 1.6664 0.7764 4.7497 32 1 1.5114 -0.4314 6.7688 33 1 2.9405 -1.4382 6.3858 34 1 0.5835 -2.9447 2.1968 35 1 -0.9324 -4.5327 3.3060 36 1 -1.1334 -4.5331 5.7606 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893672189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:26 Heat of formation + Delta-G solvation = -129.715409 kcal Electronic energy + Delta-G solvation = -21420.797128 eV Core-core repulsion = 17976.374937 eV Total energy + Delta-G solvation = -3444.422191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.92261 -41.86423 -40.46095 -37.68049 -36.08225 -35.92725 -32.69504 -31.71349 -30.22749 -28.15601 -27.28668 -25.06048 -23.84542 -22.63129 -21.94686 -21.45045 -18.77519 -18.56453 -18.13983 -17.54656 -17.19375 -16.89310 -16.70344 -16.67939 -16.09543 -15.51961 -15.01505 -14.89420 -14.66226 -14.08554 -13.70942 -13.65186 -13.50795 -13.14699 -13.04671 -12.96526 -12.73618 -12.68154 -12.61692 -12.34896 -12.25255 -12.06888 -11.96677 -11.54491 -11.11310 -11.02417 -10.54096 -9.84646 -9.69895 -8.20726 -6.33913 0.01696 0.08397 1.39848 1.42361 1.43377 1.55041 1.88978 2.42057 2.51693 3.08563 3.09847 3.21649 3.35000 3.82654 3.84147 3.95965 4.05251 4.15152 4.32126 4.46891 4.50695 4.64022 4.67211 4.80887 4.87691 4.88788 4.95761 5.03530 5.05221 5.10176 5.24309 5.36804 5.40550 5.50742 5.68748 5.81010 5.87348 6.09217 6.72941 7.03703 7.35182 8.85995 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.004339 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.858319 B = 6451.999153 C = 6835.521696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.049 3.951 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.963 3.037 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.473 3.527 13 O -0.538 6.538 14 O -0.350 6.350 15 C 0.109 3.891 16 H 0.086 0.914 17 C -0.104 4.104 18 C -0.069 4.069 19 C -0.130 4.130 20 C -0.106 4.106 21 C -0.120 4.120 22 C -0.089 4.089 23 C -0.140 4.140 24 C 0.097 3.903 25 F -0.139 7.139 26 H 0.028 0.972 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.268 0.732 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.161 0.839 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 -4.512 17.345 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.030 3.970 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.198 1.198 11 H -0.199 1.199 12 C 0.318 3.682 13 O -0.427 6.427 14 O -0.267 6.267 15 C 0.054 3.946 16 H 0.104 0.896 17 C -0.141 4.141 18 C -0.105 4.105 19 C -0.131 4.131 20 C -0.106 4.106 21 C -0.138 4.138 22 C -0.107 4.107 23 C -0.159 4.159 24 C 0.078 3.922 25 F -0.117 7.117 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.178 0.822 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.907 -4.683 17.272 17.997 hybrid contribution 0.382 -0.542 -1.015 1.212 sum -1.525 -5.225 16.257 17.144 Atomic orbital electron populations 1.21538 0.94455 0.99795 1.01826 1.18685 0.95812 0.96176 0.86277 0.93183 1.21262 1.32520 1.13219 0.90417 0.92556 1.25625 0.94880 0.95623 1.01531 1.69963 1.36705 1.23391 1.24689 0.85434 0.78376 0.78534 0.78902 1.20135 1.19811 1.19871 1.24838 0.75843 0.82590 0.84923 1.90477 1.37384 1.27635 1.87196 1.86708 1.69917 1.55165 1.14930 1.22540 0.95435 0.91450 0.85185 0.89578 1.22511 1.05075 0.97443 0.89040 1.21060 0.98552 0.93185 0.97729 1.20686 0.99073 0.99289 0.94067 1.20725 0.98295 0.97343 0.94236 1.20881 0.97173 0.95939 0.99857 1.21180 0.97307 0.97946 0.94219 1.21392 1.00821 0.99616 0.94050 1.17363 0.99375 0.98504 0.76939 1.91475 1.95100 1.95912 1.29258 0.95300 0.93624 0.90365 0.92258 0.87007 0.88776 0.87812 0.87648 0.88071 0.82169 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.90 71.98 0.64 -4.97 16 2 C 0.05 2.54 2.74 -12.29 -0.03 2.51 16 3 H 0.05 2.68 8.14 -2.38 -0.02 2.66 16 4 C -0.54 -30.38 8.37 25.60 0.21 -30.17 16 5 H 0.06 3.36 6.76 -2.91 -0.02 3.34 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -50.27 11.32 21.45 0.24 -50.02 16 8 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 C 0.47 22.27 6.91 71.23 0.49 22.76 16 13 O -0.54 -27.47 14.66 21.97 0.32 -27.15 16 14 O -0.35 -13.89 9.83 -51.41 -0.51 -14.40 16 15 C 0.11 3.50 3.16 30.52 0.10 3.60 16 16 H 0.09 2.97 7.24 -2.39 -0.02 2.95 16 17 C -0.10 -2.29 6.81 31.51 0.21 -2.07 16 18 C -0.07 -1.32 6.75 30.51 0.21 -1.11 16 19 C -0.13 -3.34 6.12 -19.55 -0.12 -3.46 16 20 C -0.11 -3.30 5.82 -19.60 -0.11 -3.42 16 21 C -0.12 -3.84 9.99 22.31 0.22 -3.62 16 22 C -0.09 -2.14 10.04 22.23 0.22 -1.92 16 23 C -0.14 -2.98 10.02 22.29 0.22 -2.76 16 24 C 0.10 2.33 7.30 22.41 0.16 2.49 16 25 F -0.14 -3.16 17.25 44.97 0.78 -2.38 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.04 1.91 8.11 -2.38 -0.02 1.89 16 28 H 0.08 4.00 6.07 -2.39 -0.01 3.99 16 29 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 30 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.09 2.05 8.11 -2.39 -0.02 2.03 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.10 3.79 7.70 -2.91 -0.02 3.76 16 35 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -64.32 311.31 6.83 -57.48 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 1.09 Total: 11.20 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 2.88 Total: -20.42 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.24 Total: -50.02 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.18 Total: -41.55 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -64.32 6.83 -57.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893672189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.235 kcal (2) G-P(sol) polarization free energy of solvation -64.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds