Wall clock time and date at job start Tue Mar 31 2020 01:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47455 * 2 1 4 4 C 1.50703 * 109.47096 * 119.99767 * 2 1 3 5 5 H 1.08002 * 119.99968 * 114.48141 * 4 2 1 6 6 C 1.37871 * 120.00349 * 294.48052 * 4 2 1 7 7 N 1.31508 * 120.00320 * 164.79849 * 6 4 2 8 8 Si 1.86809 * 119.99864 * 344.79941 * 6 4 2 9 9 H 1.48501 * 109.46780 * 269.99808 * 8 6 4 10 10 H 1.48502 * 109.47166 * 149.99846 * 8 6 4 11 11 H 1.48501 * 109.46956 * 29.99741 * 8 6 4 12 12 C 1.50694 * 109.47364 * 239.99837 * 2 1 3 13 13 O 1.20829 * 120.00474 * 240.00452 * 12 2 1 14 14 O 1.34229 * 119.99797 * 59.99829 * 12 2 1 15 15 C 1.45207 * 116.99967 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.26534 * 30.62464 * 15 14 12 17 17 C 1.54346 * 110.30103 * 152.79867 * 15 14 12 18 18 C 1.54350 * 102.39121 * 145.27141 * 17 15 14 19 19 C 1.51355 * 105.16665 * 333.64987 * 18 17 15 20 20 C 1.38227 * 109.76948 * 17.19713 * 19 18 17 21 21 C 1.38472 * 119.86352 * 179.97438 * 20 19 18 22 22 C 1.38153 * 120.26664 * 359.97438 * 21 20 19 23 23 C 1.38167 * 119.96956 * 0.02562 * 22 21 20 24 24 C 1.38375 * 119.90769 * 359.97346 * 23 22 21 25 25 F 1.35099 * 119.92361 * 180.02562 * 24 23 22 26 26 H 1.09000 * 109.47054 * 53.55342 * 1 2 3 27 27 H 1.08997 * 109.47137 * 173.55448 * 1 2 3 28 28 H 1.09001 * 109.47060 * 293.55571 * 1 2 3 29 29 H 0.97001 * 119.99981 * 354.89946 * 7 6 4 30 30 H 1.09004 * 110.82177 * 263.49593 * 17 15 14 31 31 H 1.09002 * 110.82419 * 27.04587 * 17 15 14 32 32 H 1.09003 * 110.29898 * 214.72406 * 18 17 15 33 33 H 1.09000 * 110.30207 * 92.57685 * 18 17 15 34 34 H 1.08000 * 119.86359 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.01423 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.05129 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5777 -1.6375 1.1340 6 6 1.7957 -0.1767 2.4795 7 7 1.9585 -0.9185 3.5532 8 14 1.2436 1.6001 2.6468 9 1 2.4344 2.4788 2.7702 10 1 0.3954 1.7430 3.8573 11 1 0.4624 1.9908 1.4459 12 6 2.0323 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1196 14 8 1.7081 -0.2518 -2.4495 15 6 2.2268 -0.9864 -3.5896 16 1 2.3350 -2.0421 -3.3410 17 6 1.2942 -0.8136 -4.8073 18 6 2.2889 -0.8037 -5.9875 19 6 3.5927 -0.3050 -5.4023 20 6 3.5572 -0.4101 -4.0245 21 6 4.6500 -0.0098 -3.2741 22 6 5.7757 0.4936 -3.8971 23 6 5.8133 0.5996 -5.2741 24 6 4.7230 0.2004 -6.0269 25 9 4.7597 0.3034 -7.3735 26 1 -0.3633 0.6105 -0.8267 27 1 -0.3633 -1.0211 -0.1154 28 1 -0.3633 0.4107 0.9420 29 1 2.1729 -1.8603 3.4641 30 1 0.6043 -1.6535 -4.8892 31 1 0.7522 0.1303 -4.7494 32 1 1.9418 -0.1275 -6.7689 33 1 2.4136 -1.8107 -6.3856 34 1 4.6225 -0.0923 -2.1976 35 1 6.6255 0.8050 -3.3078 36 1 6.6925 0.9933 -5.7624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893672190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:29 Heat of formation + Delta-G solvation = -114.018078 kcal Electronic energy + Delta-G solvation = -21412.195995 eV Core-core repulsion = 17968.454491 eV Total energy + Delta-G solvation = -3443.741504 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.97130 -40.59725 -39.14701 -36.35046 -34.90946 -33.99537 -31.32653 -30.67433 -29.27995 -27.12056 -24.91732 -23.35049 -22.87806 -21.47434 -20.82408 -19.72211 -17.66230 -17.38049 -16.91316 -16.51501 -15.89315 -15.75552 -15.60173 -15.21121 -14.60588 -14.15948 -13.74789 -13.45646 -13.03483 -13.02498 -12.58430 -12.51442 -12.21556 -11.94044 -11.90016 -11.70231 -11.48535 -11.35911 -11.21815 -10.99376 -10.60743 -10.34820 -10.22225 -9.71668 -9.36695 -8.89572 -8.84012 -8.71467 -8.38690 -6.55012 -4.16917 1.02253 1.07230 3.07095 3.21342 3.35726 3.37865 3.51507 3.58320 4.04493 4.18527 4.32645 4.42959 4.73232 4.84808 4.97939 5.01093 5.18725 5.19346 5.31664 5.42361 5.51906 5.67646 5.72574 5.75292 5.96648 5.99054 6.07765 6.17441 6.25537 6.39633 6.40107 6.48080 6.77462 6.80139 7.03830 7.15964 7.75130 8.36730 8.66660 8.89409 9.52470 10.86133 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027724 B = 0.004570 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.722258 B = 6125.965951 C = 6534.104159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.031 3.969 3 H 0.057 0.943 4 C -0.600 4.600 5 H 0.076 0.924 6 C 0.036 3.964 7 N -0.900 5.900 8 Si 1.037 2.963 9 H -0.284 1.284 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.469 3.531 13 O -0.504 6.504 14 O -0.354 6.354 15 C 0.121 3.879 16 H 0.101 0.899 17 C -0.111 4.111 18 C -0.074 4.074 19 C -0.129 4.129 20 C -0.079 4.079 21 C -0.096 4.096 22 C -0.091 4.091 23 C -0.151 4.151 24 C 0.104 3.896 25 F -0.142 7.142 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.271 0.729 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 3.617 -18.904 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.075 0.925 4 C -0.637 4.637 5 H 0.094 0.906 6 C -0.169 4.169 7 N -0.533 5.533 8 Si 0.864 3.136 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.313 3.687 13 O -0.390 6.390 14 O -0.272 6.272 15 C 0.065 3.935 16 H 0.118 0.882 17 C -0.149 4.149 18 C -0.111 4.111 19 C -0.130 4.130 20 C -0.080 4.080 21 C -0.114 4.114 22 C -0.109 4.109 23 C -0.170 4.170 24 C 0.085 3.915 25 F -0.121 7.121 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.572 4.462 -17.821 18.438 hybrid contribution 0.688 -1.345 -1.301 1.993 sum 2.261 3.118 -19.122 19.506 Atomic orbital electron populations 1.22107 0.96125 1.00645 1.00811 1.19120 0.94347 0.97129 0.88247 0.92524 1.21980 1.40670 1.11682 0.89378 0.90565 1.25734 0.94197 1.05351 0.91647 1.70785 1.43414 1.08539 1.30536 0.84216 0.77460 0.75556 0.76372 1.21033 1.20842 1.19382 1.24854 0.76819 0.83213 0.83855 1.90530 1.35712 1.26258 1.86452 1.86758 1.69815 1.55525 1.15088 1.22104 0.89162 0.96953 0.85234 0.88170 1.22428 0.97089 1.04423 0.90939 1.20963 0.90305 1.01835 0.97985 1.20430 0.95903 1.01779 0.94869 1.20681 0.95963 0.98259 0.93079 1.20882 0.92023 0.97441 1.01062 1.20948 0.98160 0.98311 0.93487 1.21055 0.97952 1.03377 0.94582 1.17220 0.94857 1.02744 0.76689 1.91467 1.96878 1.94186 1.29574 0.94320 0.93429 0.91903 0.91865 0.89279 0.89009 0.89820 0.89516 0.85102 0.84512 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.40 37.16 0.31 -2.59 16 2 C 0.03 0.74 2.29 -92.93 -0.21 0.52 16 3 H 0.06 1.28 6.78 -51.93 -0.35 0.93 16 4 C -0.60 -16.78 8.65 -34.44 -0.30 -17.08 16 5 H 0.08 2.40 7.02 -52.49 -0.37 2.03 16 6 C 0.04 1.02 5.33 -17.82 -0.09 0.93 16 7 N -0.90 -27.19 13.69 55.43 0.76 -26.43 16 8 Si 1.04 23.79 26.17 -169.99 -4.45 19.34 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -5.49 5.54 56.52 0.31 -5.17 16 12 C 0.47 10.40 6.91 36.00 0.25 10.65 16 13 O -0.50 -12.40 14.66 -18.75 -0.27 -12.68 16 14 O -0.35 -6.59 9.85 -39.26 -0.39 -6.98 16 15 C 0.12 1.88 3.16 -26.85 -0.08 1.80 16 16 H 0.10 1.65 7.23 -51.93 -0.38 1.27 16 17 C -0.11 -1.27 6.81 -25.32 -0.17 -1.44 16 18 C -0.07 -0.78 6.75 -26.85 -0.18 -0.96 16 19 C -0.13 -1.71 6.12 -104.14 -0.64 -2.35 16 20 C -0.08 -1.21 5.82 -104.21 -0.61 -1.82 16 21 C -0.10 -1.47 9.99 -39.53 -0.39 -1.87 16 22 C -0.09 -1.13 10.04 -39.64 -0.40 -1.53 16 23 C -0.15 -1.75 10.02 -39.56 -0.40 -2.15 16 24 C 0.10 1.33 7.30 -39.37 -0.29 1.04 16 25 F -0.14 -1.78 17.25 2.25 0.04 -1.75 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.32 5.06 -51.93 -0.26 1.06 16 29 H 0.27 8.25 8.73 -40.82 -0.36 7.90 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.13 2.24 7.70 -52.49 -0.40 1.84 16 35 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 306.44 15.07 4.62 4.62 Total: -1.00 -31.33 306.44 -7.28 -38.61 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.38 Total: 2.09 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -3.20 Total: -16.84 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.76 Total: -26.43 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.66 Total: -19.65 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.45 Total: 19.34 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.33 -7.28 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893672190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.408 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds