Wall clock time and date at job start Tue Mar 31 2020 01:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47455 * 2 1 4 4 C 1.50703 * 109.47096 * 119.99767 * 2 1 3 5 5 H 1.08002 * 119.99968 * 114.48141 * 4 2 1 6 6 C 1.37871 * 120.00349 * 294.48052 * 4 2 1 7 7 N 1.31508 * 120.00320 * 164.79849 * 6 4 2 8 8 Si 1.86809 * 119.99864 * 344.79941 * 6 4 2 9 9 H 1.48501 * 109.46780 * 269.99808 * 8 6 4 10 10 H 1.48502 * 109.47166 * 149.99846 * 8 6 4 11 11 H 1.48501 * 109.46956 * 29.99741 * 8 6 4 12 12 C 1.50694 * 109.47364 * 239.99837 * 2 1 3 13 13 O 1.20829 * 120.00474 * 240.00452 * 12 2 1 14 14 O 1.34229 * 119.99797 * 59.99829 * 12 2 1 15 15 C 1.45207 * 116.99967 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.26534 * 30.62464 * 15 14 12 17 17 C 1.54346 * 110.30103 * 152.79867 * 15 14 12 18 18 C 1.54350 * 102.39121 * 145.27141 * 17 15 14 19 19 C 1.51355 * 105.16665 * 333.64987 * 18 17 15 20 20 C 1.38227 * 109.76948 * 17.19713 * 19 18 17 21 21 C 1.38472 * 119.86352 * 179.97438 * 20 19 18 22 22 C 1.38153 * 120.26664 * 359.97438 * 21 20 19 23 23 C 1.38167 * 119.96956 * 0.02562 * 22 21 20 24 24 C 1.38375 * 119.90769 * 359.97346 * 23 22 21 25 25 F 1.35099 * 119.92361 * 180.02562 * 24 23 22 26 26 H 1.09000 * 109.47054 * 53.55342 * 1 2 3 27 27 H 1.08997 * 109.47137 * 173.55448 * 1 2 3 28 28 H 1.09001 * 109.47060 * 293.55571 * 1 2 3 29 29 H 0.97001 * 119.99981 * 354.89946 * 7 6 4 30 30 H 1.09004 * 110.82177 * 263.49593 * 17 15 14 31 31 H 1.09002 * 110.82419 * 27.04587 * 17 15 14 32 32 H 1.09003 * 110.29898 * 214.72406 * 18 17 15 33 33 H 1.09000 * 110.30207 * 92.57685 * 18 17 15 34 34 H 1.08000 * 119.86359 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.01423 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.05129 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5777 -1.6375 1.1340 6 6 1.7957 -0.1767 2.4795 7 7 1.9585 -0.9185 3.5532 8 14 1.2436 1.6001 2.6468 9 1 2.4344 2.4788 2.7702 10 1 0.3954 1.7430 3.8573 11 1 0.4624 1.9908 1.4459 12 6 2.0323 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1196 14 8 1.7081 -0.2518 -2.4495 15 6 2.2268 -0.9864 -3.5896 16 1 2.3350 -2.0421 -3.3410 17 6 1.2942 -0.8136 -4.8073 18 6 2.2889 -0.8037 -5.9875 19 6 3.5927 -0.3050 -5.4023 20 6 3.5572 -0.4101 -4.0245 21 6 4.6500 -0.0098 -3.2741 22 6 5.7757 0.4936 -3.8971 23 6 5.8133 0.5996 -5.2741 24 6 4.7230 0.2004 -6.0269 25 9 4.7597 0.3034 -7.3735 26 1 -0.3633 0.6105 -0.8267 27 1 -0.3633 -1.0211 -0.1154 28 1 -0.3633 0.4107 0.9420 29 1 2.1729 -1.8603 3.4641 30 1 0.6043 -1.6535 -4.8892 31 1 0.7522 0.1303 -4.7494 32 1 1.9418 -0.1275 -6.7689 33 1 2.4136 -1.8107 -6.3856 34 1 4.6225 -0.0923 -2.1976 35 1 6.6255 0.8050 -3.3078 36 1 6.6925 0.9933 -5.7624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893672190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:29 Heat of formation + Delta-G solvation = -131.621391 kcal Electronic energy + Delta-G solvation = -21412.959332 eV Core-core repulsion = 17968.454491 eV Total energy + Delta-G solvation = -3444.504841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.94441 -41.93726 -40.53608 -37.75489 -36.13276 -35.98819 -33.32618 -31.76776 -30.26429 -28.22939 -26.87023 -25.10234 -23.87632 -22.56738 -21.95485 -21.41778 -19.59566 -18.71573 -18.44315 -17.73881 -17.22099 -16.86123 -16.74963 -16.62425 -15.77403 -15.43016 -15.17740 -14.86702 -14.72948 -14.18135 -14.00676 -13.91173 -13.54652 -13.36718 -13.12616 -13.09257 -12.98033 -12.74020 -12.42156 -12.31484 -12.15101 -11.99099 -11.61687 -11.41079 -11.12798 -11.00151 -10.54672 -9.88477 -9.73126 -8.82779 -6.45018 -0.02206 0.05108 1.32049 1.52184 1.57344 1.73228 1.80655 2.46154 2.51804 3.03421 3.05605 3.18516 3.31099 3.76511 3.81205 3.91442 4.01261 4.06956 4.28319 4.39181 4.41348 4.45251 4.59793 4.61934 4.78149 4.83125 4.86061 4.99145 5.01844 5.04448 5.11120 5.20922 5.34056 5.39325 5.48112 5.74367 5.77809 6.01567 6.52304 6.94521 7.34814 8.57740 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027724 B = 0.004570 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.722258 B = 6125.965951 C = 6534.104159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.022 3.978 3 H 0.076 0.924 4 C -0.606 4.606 5 H 0.022 0.978 6 C -0.014 4.014 7 N -0.932 5.932 8 Si 1.079 2.921 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.221 1.221 12 C 0.475 3.525 13 O -0.541 6.541 14 O -0.344 6.344 15 C 0.110 3.890 16 H 0.082 0.918 17 C -0.101 4.101 18 C -0.070 4.070 19 C -0.128 4.128 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.089 4.089 23 C -0.140 4.140 24 C 0.098 3.902 25 F -0.138 7.138 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.251 0.749 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.842 6.055 -21.892 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.002 3.998 3 H 0.094 0.906 4 C -0.644 4.644 5 H 0.041 0.959 6 C -0.212 4.212 7 N -0.567 5.567 8 Si 0.898 3.102 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.144 1.144 12 C 0.320 3.680 13 O -0.430 6.430 14 O -0.262 6.262 15 C 0.055 3.945 16 H 0.100 0.900 17 C -0.138 4.138 18 C -0.106 4.106 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.141 4.141 22 C -0.107 4.107 23 C -0.158 4.158 24 C 0.079 3.921 25 F -0.117 7.117 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.178 0.822 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.696 6.893 -20.861 21.981 hybrid contribution 1.080 -2.196 -0.481 2.494 sum 1.775 4.697 -21.341 21.924 Atomic orbital electron populations 1.22021 0.93436 1.01219 1.02485 1.19101 0.96373 0.97294 0.87026 0.90648 1.22013 1.40116 1.10101 0.92139 0.95934 1.27387 0.93406 1.09351 0.91014 1.70936 1.46200 1.07744 1.31806 0.83760 0.78159 0.69971 0.78322 1.19846 1.20808 1.14409 1.24531 0.76061 0.82432 0.84960 1.90521 1.37339 1.27933 1.87211 1.86680 1.69372 1.55462 1.14645 1.22548 0.91080 0.95686 0.85199 0.90025 1.22513 0.96837 1.05799 0.88699 1.21072 0.88472 1.03232 0.97857 1.20682 0.97200 1.01065 0.93981 1.20727 0.95867 0.99889 0.94302 1.20878 0.93820 0.99590 0.99787 1.21175 0.97752 0.97468 0.94256 1.21397 0.98590 1.01801 0.94015 1.17365 0.95079 1.02692 0.76958 1.91481 1.96862 1.94134 1.29204 0.90391 0.94148 0.91762 0.93976 0.87064 0.88220 0.87586 0.87834 0.88247 0.82224 0.81340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 8.40 71.98 0.60 -4.70 16 2 C 0.02 1.01 2.29 -12.29 -0.03 0.98 16 3 H 0.08 3.26 6.78 -2.38 -0.02 3.24 16 4 C -0.61 -35.23 8.65 25.60 0.22 -35.01 16 5 H 0.02 1.51 7.02 -2.91 -0.02 1.49 16 6 C -0.01 -0.78 5.33 84.65 0.45 -0.33 16 7 N -0.93 -58.64 13.69 21.44 0.29 -58.35 16 8 Si 1.08 46.74 26.17 68.60 1.80 48.53 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.22 -7.89 5.54 99.48 0.55 -7.34 16 12 C 0.48 21.50 6.91 71.23 0.49 21.99 16 13 O -0.54 -28.20 14.66 21.95 0.32 -27.88 16 14 O -0.34 -12.64 9.85 -51.41 -0.51 -13.15 16 15 C 0.11 3.37 3.16 30.52 0.10 3.47 16 16 H 0.08 2.78 7.23 -2.39 -0.02 2.76 16 17 C -0.10 -2.04 6.81 31.51 0.21 -1.82 16 18 C -0.07 -1.24 6.75 30.51 0.21 -1.04 16 19 C -0.13 -3.14 6.12 -19.55 -0.12 -3.26 16 20 C -0.11 -3.24 5.82 -19.60 -0.11 -3.35 16 21 C -0.12 -3.82 9.99 22.31 0.22 -3.60 16 22 C -0.09 -2.09 10.04 22.23 0.22 -1.87 16 23 C -0.14 -2.86 10.02 22.29 0.22 -2.64 16 24 C 0.10 2.25 7.30 22.41 0.16 2.42 16 25 F -0.14 -3.02 17.25 44.97 0.78 -2.24 16 26 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 2.51 5.06 -2.39 -0.01 2.50 16 29 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 30 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.10 1.88 8.12 -2.39 -0.02 1.86 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 3.67 7.70 -2.91 -0.02 3.65 16 35 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -72.76 306.44 6.44 -66.32 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.90 Total: 15.53 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 2.86 Total: -28.76 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.29 Total: -58.35 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -0.18 Total: -41.03 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.80 Total: 48.53 kcal Total: -72.76 6.44 -66.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893672190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.306 kcal (2) G-P(sol) polarization free energy of solvation -72.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds