Wall clock time and date at job start Tue Mar 31 2020 01:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46940 * 2 1 4 4 C 1.35311 * 125.87116 * 124.98213 * 3 2 1 5 5 C 1.35347 * 106.17835 * 180.02562 * 4 3 2 6 6 C 1.50698 * 126.75052 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.47128 * 95.00494 * 6 5 4 8 8 C 1.46892 * 111.00284 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47569 * 325.00276 * 8 7 6 10 10 C 1.50701 * 109.47245 * 204.99995 * 8 7 6 11 11 H 1.08003 * 120.00083 * 274.97806 * 10 8 7 12 12 C 1.37881 * 119.99778 * 94.98349 * 10 8 7 13 13 N 1.31518 * 119.99490 * 184.90694 * 12 10 8 14 14 Si 1.86797 * 120.00097 * 4.90747 * 12 10 8 15 15 H 1.48494 * 109.47277 * 84.80905 * 14 12 10 16 16 H 1.48502 * 109.46726 * 204.81286 * 14 12 10 17 17 H 1.48494 * 109.46899 * 324.80783 * 14 12 10 18 18 C 1.53004 * 109.47069 * 84.99997 * 8 7 6 19 19 F 1.39898 * 109.46760 * 54.76238 * 18 8 7 20 20 F 1.39899 * 109.46947 * 174.75948 * 18 8 7 21 21 F 1.39901 * 109.47123 * 294.76499 * 18 8 7 22 22 N 1.33770 * 106.49745 * 0.02562 * 5 4 3 23 23 N 1.28637 * 108.88279 * 359.97438 * 22 5 4 24 24 H 1.08996 * 109.47022 * 299.99782 * 1 2 3 25 25 H 1.09004 * 109.47065 * 60.00065 * 1 2 3 26 26 H 1.08998 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47022 * 240.00218 * 2 1 3 28 28 H 1.08994 * 109.47285 * 119.99435 * 2 1 3 29 29 H 1.08004 * 126.90800 * 0.07417 * 4 3 2 30 30 H 1.09001 * 109.47243 * 215.00330 * 6 5 4 31 31 H 1.08999 * 109.47712 * 335.00370 * 6 5 4 32 32 H 1.00900 * 111.00031 * 303.95756 * 7 6 5 33 33 H 0.97002 * 119.99571 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8752 1.9193 0.8984 5 6 3.0530 3.2080 0.5250 6 6 3.9221 4.2328 1.2073 7 7 5.2376 4.2717 0.5548 8 6 6.1135 5.2623 1.1945 9 1 5.5190 6.1149 1.5228 10 6 7.1534 5.7254 0.2070 11 1 8.0636 5.1589 0.0757 12 6 6.9430 6.8724 -0.5287 13 7 7.8040 7.2243 -1.4585 14 14 5.4351 7.9262 -0.2049 15 1 5.7156 8.8612 0.9141 16 1 5.1018 8.7020 -1.4266 17 1 4.2891 7.0532 0.1550 18 6 6.8047 4.6272 2.4028 19 9 7.4706 3.4643 2.0010 20 9 7.7274 5.5309 2.9405 21 9 5.8479 4.3056 3.3715 22 7 2.3055 3.3932 -0.5688 23 7 1.7051 2.2919 -0.8541 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.3272 1.4204 1.7430 30 1 3.4519 5.2136 1.1357 31 1 4.0448 3.9645 2.2566 32 1 5.6664 3.3584 0.5509 33 1 7.6562 8.0314 -1.9759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896697742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:20 Heat of formation + Delta-G solvation = -79.975504 kcal Electronic energy + Delta-G solvation = -22122.877624 eV Core-core repulsion = 18190.968289 eV Total energy + Delta-G solvation = -3931.909334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.89422 -48.42056 -48.32894 -44.19293 -37.91328 -36.30525 -34.68165 -32.79024 -31.70354 -30.07633 -26.78925 -26.10287 -25.51846 -22.76101 -22.66918 -21.75056 -19.95110 -19.24032 -18.75429 -18.40978 -18.14985 -17.37598 -16.60138 -15.88488 -15.73563 -15.57274 -15.26569 -15.24679 -14.93387 -14.81782 -14.76807 -14.55021 -14.42726 -14.33404 -13.70272 -13.62722 -13.24067 -12.98633 -12.80064 -12.67978 -12.40095 -12.28394 -11.83668 -11.65508 -11.61767 -10.98486 -10.80795 -10.24133 -9.29625 -8.36711 -6.49236 0.66712 1.35910 1.41232 1.47063 1.52007 1.56322 2.02649 2.33891 2.82247 3.12915 3.36428 3.38731 3.45209 3.68152 3.78529 3.98916 4.01221 4.16395 4.30288 4.34908 4.44203 4.60020 4.75701 4.79628 4.98885 5.11283 5.20330 5.27273 5.74991 5.93470 6.17646 6.44372 6.61914 7.21318 7.56490 8.77838 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.019368 B = 0.005719 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.324199 B = 4894.689768 C = 5776.703061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.284 5.284 4 C -0.027 4.027 5 C -0.033 4.033 6 C 0.127 3.873 7 N -0.670 5.670 8 C 0.163 3.837 9 H 0.086 0.914 10 C -0.512 4.512 11 H 0.045 0.955 12 C 0.045 3.955 13 N -0.926 5.926 14 Si 0.930 3.070 15 H -0.257 1.257 16 H -0.288 1.288 17 H -0.241 1.241 18 C 0.422 3.578 19 F -0.190 7.190 20 F -0.189 7.189 21 F -0.190 7.190 22 N -0.300 5.300 23 N -0.117 5.117 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.144 0.856 29 H 0.232 0.768 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.341 0.659 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.090 -15.161 9.590 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.019 4.019 3 N -0.079 5.079 4 C -0.179 4.179 5 C -0.173 4.173 6 C -0.003 4.003 7 N -0.302 5.302 8 C 0.053 3.947 9 H 0.104 0.896 10 C -0.550 4.550 11 H 0.063 0.937 12 C -0.157 4.157 13 N -0.563 5.563 14 Si 0.753 3.247 15 H -0.181 1.181 16 H -0.214 1.214 17 H -0.165 1.165 18 C 0.365 3.635 19 F -0.172 7.172 20 F -0.171 7.171 21 F -0.171 7.171 22 N -0.167 5.167 23 N -0.096 5.096 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.161 0.839 29 H 0.248 0.752 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.162 0.838 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.107 -14.353 7.690 21.545 hybrid contribution 0.771 -0.150 1.467 1.664 sum -13.336 -14.504 9.157 21.727 Atomic orbital electron populations 1.22060 0.92375 1.05021 1.02576 1.22618 0.97246 0.74318 1.07675 1.47880 1.29610 1.12899 1.17464 1.23935 0.99257 0.94420 1.00303 1.21980 1.02659 0.95941 0.96673 1.20435 0.87887 0.96601 0.95358 1.61145 1.02389 1.11306 1.55403 1.20699 0.92638 0.93297 0.88092 0.89581 1.20539 1.02460 1.09454 1.22564 0.93676 1.25683 0.98686 0.98175 0.93156 1.69994 1.38397 1.25633 1.22267 0.85997 0.80934 0.79242 0.78527 1.18136 1.21406 1.16466 1.22482 0.78015 0.76678 0.86301 1.93065 1.82138 1.51349 1.90659 1.93100 1.68524 1.67835 1.87643 1.93078 1.63603 1.93316 1.67152 1.75050 1.09800 1.17276 1.14532 1.78157 1.21931 0.93354 1.16146 0.92424 0.92949 0.86969 0.87258 0.83856 0.75158 0.90870 0.90459 0.83839 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.04 71.98 0.72 -0.90 16 2 C 0.10 1.06 7.18 86.38 0.62 1.68 16 3 N -0.28 -6.39 3.44 -347.74 -1.20 -7.58 16 4 C -0.03 -0.60 11.50 83.49 0.96 0.36 16 5 C -0.03 -1.07 6.76 41.60 0.28 -0.79 16 6 C 0.13 4.29 5.98 85.56 0.51 4.80 16 7 N -0.67 -27.13 6.22 -499.47 -3.11 -30.23 16 8 C 0.16 7.19 1.76 44.17 0.08 7.26 16 9 H 0.09 3.70 4.95 -2.39 -0.01 3.69 16 10 C -0.51 -28.06 8.66 25.60 0.22 -27.84 16 11 H 0.04 2.76 8.01 -2.91 -0.02 2.74 16 12 C 0.05 2.56 5.47 84.66 0.46 3.02 16 13 N -0.93 -56.41 13.96 21.45 0.30 -56.12 16 14 Si 0.93 43.33 26.99 68.60 1.85 45.19 16 15 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 16 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.24 -10.69 6.24 99.48 0.62 -10.07 16 18 C 0.42 16.71 2.80 71.98 0.20 16.91 16 19 F -0.19 -7.54 16.18 44.97 0.73 -6.81 16 20 F -0.19 -8.06 16.89 44.97 0.76 -7.30 16 21 F -0.19 -6.28 15.24 44.97 0.69 -5.59 16 22 N -0.30 -11.50 12.41 -48.60 -0.60 -12.11 16 23 N -0.12 -3.78 12.91 37.02 0.48 -3.30 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.78 8.12 -2.38 -0.02 0.76 16 26 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.14 0.42 8.07 -2.39 -0.02 0.40 16 29 H 0.23 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.07 2.67 7.48 -2.39 -0.02 2.66 16 31 H 0.08 2.17 6.18 -2.39 -0.01 2.15 16 32 H 0.34 13.01 7.70 -89.69 -0.69 12.32 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -72.78 296.13 4.34 -68.44 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.39 Total: 10.91 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 4.06 Total: 4.51 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -4.13 Total: -109.34 kcal Atomic # 9 Polarization: -21.88 SS G_CDS: 2.17 Total: -19.71 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.85 Total: 45.19 kcal Total: -72.78 4.34 -68.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896697742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.537 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds