Wall clock time and date at job start Tue Mar 31 2020 01:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46993 * 2 1 4 4 C 1.35307 * 125.86774 * 125.00108 * 3 2 1 5 5 C 1.35350 * 106.17738 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.75487 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46867 * 95.01392 * 6 5 4 8 8 C 1.46899 * 110.99762 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47168 * 35.00441 * 8 7 6 10 10 C 1.50701 * 109.47240 * 154.99854 * 8 7 6 11 11 H 1.07999 * 120.00121 * 0.02562 * 10 8 7 12 12 C 1.37876 * 120.00031 * 180.02562 * 10 8 7 13 13 N 1.31510 * 120.00323 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99900 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46923 * 90.00154 * 14 12 10 16 16 H 1.48498 * 109.47310 * 209.99766 * 14 12 10 17 17 H 1.48502 * 109.47244 * 330.00160 * 14 12 10 18 18 C 1.53007 * 109.47506 * 275.00106 * 8 7 6 19 19 F 1.39893 * 109.46724 * 59.99812 * 18 8 7 20 20 F 1.39900 * 109.46993 * 179.97438 * 18 8 7 21 21 F 1.39898 * 109.46908 * 299.99930 * 18 8 7 22 22 N 1.33771 * 106.49501 * 359.97438 * 5 4 3 23 23 N 1.28634 * 108.88748 * 0.02562 * 22 5 4 24 24 H 1.09001 * 109.46880 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46943 * 300.00237 * 1 2 3 26 26 H 1.08997 * 109.46837 * 59.99970 * 1 2 3 27 27 H 1.08997 * 109.47280 * 240.00120 * 2 1 3 28 28 H 1.08996 * 109.47111 * 119.99557 * 2 1 3 29 29 H 1.08003 * 126.91448 * 359.97115 * 4 3 2 30 30 H 1.08994 * 109.46952 * 215.01499 * 6 5 4 31 31 H 1.08994 * 109.46741 * 335.01328 * 6 5 4 32 32 H 1.00893 * 111.00436 * 303.95294 * 7 6 5 33 33 H 0.97005 * 120.00320 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8756 1.9191 0.8982 5 6 3.0533 3.2079 0.5249 6 6 3.9218 4.2329 1.2077 7 7 5.2375 4.2723 0.5557 8 6 6.1128 5.2632 1.1959 9 1 5.9106 5.2886 2.2667 10 6 7.5532 4.8844 0.9657 11 1 7.7943 3.9966 0.3999 12 6 8.5632 5.6713 1.4772 13 7 8.2697 6.7521 2.1665 14 14 10.3486 5.2021 1.1912 15 1 10.8310 5.8324 -0.0639 16 1 11.1736 5.6753 2.3316 17 1 10.4604 3.7256 1.0783 18 6 5.8461 6.6442 0.5936 19 9 4.5091 6.9957 0.8074 20 9 6.6793 7.5879 1.2037 21 9 6.1057 6.6115 -0.7807 22 7 2.3063 3.3929 -0.5693 23 7 1.7055 2.2918 -0.8543 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.3266 1.4206 1.7435 30 1 3.4512 5.2135 1.1360 31 1 4.0440 3.9645 2.2570 32 1 5.6667 3.3592 0.5520 33 1 8.9803 7.3055 2.5268 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896697744.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:23 Heat of formation + Delta-G solvation = -58.821573 kcal Electronic energy + Delta-G solvation = -22111.300868 eV Core-core repulsion = 18180.308837 eV Total energy + Delta-G solvation = -3930.992031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.28708 -47.93384 -47.59476 -44.16838 -37.73694 -36.27129 -34.72848 -32.51844 -31.66564 -29.66800 -26.50410 -26.09593 -25.49644 -22.79725 -22.59009 -21.69340 -19.25478 -18.74831 -18.56778 -18.11442 -17.47887 -17.19883 -16.71958 -16.05291 -15.55194 -15.41046 -15.21377 -14.91369 -14.78665 -14.50578 -14.34453 -14.18036 -14.02663 -13.87427 -13.57729 -13.23002 -12.91063 -12.85220 -12.71741 -12.54491 -12.41922 -12.28814 -11.95860 -11.60090 -11.32007 -10.95393 -10.62400 -10.18816 -9.29119 -8.14666 -6.41057 0.69409 1.45773 1.48609 1.50369 1.58029 1.58785 2.39332 2.63092 3.01396 3.28629 3.48362 3.71036 3.91317 3.97943 4.01235 4.10567 4.19938 4.32403 4.45568 4.47680 4.65312 4.77214 4.82736 4.93478 5.02329 5.15609 5.29192 5.58939 5.73458 5.77802 6.11844 6.56150 6.75485 7.28974 7.58966 8.78013 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.026689 B = 0.004651 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.872370 B = 6018.550445 C = 6679.391229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.284 5.284 4 C -0.025 4.025 5 C -0.031 4.031 6 C 0.137 3.863 7 N -0.679 5.679 8 C 0.196 3.804 9 H 0.032 0.968 10 C -0.551 4.551 11 H 0.078 0.922 12 C 0.016 3.984 13 N -0.874 5.874 14 Si 0.973 3.027 15 H -0.283 1.283 16 H -0.279 1.279 17 H -0.258 1.258 18 C 0.431 3.569 19 F -0.222 7.222 20 F -0.155 7.155 21 F -0.207 7.207 22 N -0.301 5.301 23 N -0.117 5.117 24 H 0.112 0.888 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.110 0.890 28 H 0.144 0.856 29 H 0.234 0.766 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.355 0.645 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 -15.265 2.004 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.079 5.079 4 C -0.177 4.177 5 C -0.171 4.171 6 C 0.007 3.993 7 N -0.313 5.313 8 C 0.084 3.916 9 H 0.050 0.950 10 C -0.588 4.588 11 H 0.096 0.904 12 C -0.189 4.189 13 N -0.509 5.509 14 Si 0.797 3.203 15 H -0.209 1.209 16 H -0.205 1.205 17 H -0.182 1.182 18 C 0.376 3.624 19 F -0.204 7.204 20 F -0.137 7.137 21 F -0.189 7.189 22 N -0.167 5.167 23 N -0.096 5.096 24 H 0.130 0.870 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.128 0.872 28 H 0.161 0.839 29 H 0.250 0.750 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.176 0.824 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.001 -14.372 0.329 18.102 hybrid contribution 1.506 -0.021 1.287 1.981 sum -9.495 -14.394 1.616 17.319 Atomic orbital electron populations 1.22066 0.92483 1.05005 1.02542 1.22616 0.97160 0.74316 1.07714 1.47879 1.29616 1.12893 1.17524 1.23950 0.99142 0.94336 1.00269 1.21948 1.02619 0.95836 0.96662 1.20273 0.87743 0.96583 0.94715 1.60035 1.02779 1.11573 1.56930 1.19888 0.94010 0.84952 0.92715 0.95049 1.21170 0.88772 1.12278 1.36575 0.90397 1.25894 1.04252 0.94236 0.94491 1.70501 1.33777 1.13628 1.32991 0.85320 0.78311 0.79165 0.77460 1.20941 1.20458 1.18199 1.22855 0.71619 0.92073 0.75884 1.92966 1.38616 1.94040 1.94746 1.93365 1.69898 1.68465 1.81924 1.92977 1.93919 1.97186 1.34819 1.75044 1.09754 1.17226 1.14662 1.78152 1.21924 0.93355 1.16217 0.86958 0.92527 0.92943 0.87160 0.83851 0.74989 0.91085 0.91298 0.82397 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.04 71.98 0.72 -0.91 16 2 C 0.10 1.04 7.18 86.38 0.62 1.66 16 3 N -0.28 -6.37 3.44 -347.72 -1.20 -7.57 16 4 C -0.02 -0.56 11.50 83.49 0.96 0.40 16 5 C -0.03 -1.03 6.76 41.60 0.28 -0.75 16 6 C 0.14 4.95 5.95 85.56 0.51 5.46 16 7 N -0.68 -28.46 6.21 -499.47 -3.10 -31.57 16 8 C 0.20 9.57 2.26 44.17 0.10 9.67 16 9 H 0.03 1.61 7.80 -2.39 -0.02 1.59 16 10 C -0.55 -28.42 8.33 25.60 0.21 -28.21 16 11 H 0.08 3.88 7.62 -2.91 -0.02 3.86 16 12 C 0.02 0.83 5.20 84.65 0.44 1.27 16 13 N -0.87 -48.18 9.51 21.45 0.20 -47.97 16 14 Si 0.97 41.47 29.54 68.60 2.03 43.50 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 16 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 18 C 0.43 22.72 2.81 71.98 0.20 22.92 16 19 F -0.22 -11.00 15.04 44.97 0.68 -10.32 16 20 F -0.16 -8.78 12.92 44.97 0.58 -8.20 16 21 F -0.21 -11.32 16.94 44.97 0.76 -10.56 16 22 N -0.30 -11.58 12.41 -48.60 -0.60 -12.19 16 23 N -0.12 -3.79 12.91 37.02 0.48 -3.32 16 24 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 27 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.14 0.40 8.07 -2.39 -0.02 0.38 16 29 H 0.23 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.07 2.91 6.02 -2.39 -0.01 2.89 16 31 H 0.07 2.12 8.06 -2.39 -0.02 2.10 16 32 H 0.36 13.60 8.22 -89.70 -0.74 12.87 16 33 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 Total: -1.00 -70.60 294.95 4.29 -66.31 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.42 Total: 10.35 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 4.05 Total: 11.52 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -4.22 Total: -102.61 kcal Atomic # 9 Polarization: -31.10 SS G_CDS: 2.02 Total: -29.08 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -70.60 4.29 -66.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896697744.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.490 kcal (2) G-P(sol) polarization free energy of solvation -70.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds