Wall clock time and date at job start Tue Mar 31 2020 01:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21267 * 119.99858 * 2 1 4 4 C 1.47019 * 119.99498 * 180.02562 * 2 1 3 5 5 C 1.39940 * 120.12813 * 359.97214 * 4 2 1 6 6 C 1.37800 * 119.95375 * 180.02562 * 5 4 2 7 7 C 1.38593 * 120.20608 * 359.72351 * 6 5 4 8 8 F 1.35100 * 119.87480 * 180.30187 * 7 6 5 9 9 C 1.39142 * 120.25312 * 0.55366 * 7 6 5 10 10 O 1.35964 * 119.98262 * 179.72760 * 9 7 6 11 11 C 1.42901 * 117.00218 * 185.39939 * 10 9 7 12 12 C 1.53000 * 109.46986 * 174.82104 * 11 10 9 13 13 C 1.50698 * 115.55007 * 39.69385 * 12 11 10 14 14 H 1.08002 * 119.99919 * 267.57926 * 13 12 11 15 15 C 1.37878 * 119.99891 * 87.57912 * 13 12 11 16 16 N 1.31519 * 119.99751 * 177.10464 * 15 13 12 17 17 Si 1.86799 * 120.00143 * 357.10645 * 15 13 12 18 18 H 1.48501 * 109.46964 * 89.86301 * 17 15 13 19 19 H 1.48502 * 109.46752 * 209.86336 * 17 15 13 20 20 H 1.48497 * 109.46958 * 329.86029 * 17 15 13 21 21 C 1.52999 * 117.49703 * 253.98256 * 12 11 10 22 22 C 1.52994 * 60.00052 * 252.51253 * 21 12 11 23 23 C 1.38226 * 120.04102 * 359.44931 * 9 7 6 24 24 H 1.08996 * 109.47373 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46479 * 300.00169 * 1 2 3 26 26 H 1.08995 * 109.47005 * 59.99927 * 1 2 3 27 27 H 1.08000 * 120.02085 * 0.04968 * 5 4 2 28 28 H 1.07994 * 119.89563 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.46852 * 54.82202 * 11 10 9 30 30 H 1.08997 * 109.46606 * 294.81967 * 11 10 9 31 31 H 0.96996 * 119.99898 * 180.02562 * 16 15 13 32 32 H 1.08995 * 117.50176 * 0.02562 * 21 12 11 33 33 H 1.09005 * 117.49551 * 145.02433 * 21 12 11 34 34 H 1.09004 * 117.49752 * 252.51230 * 22 21 12 35 35 H 1.09000 * 117.51973 * 107.48591 * 22 21 12 36 36 H 1.08006 * 120.10835 * 180.25387 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2421 -1.2733 -0.0006 5 6 1.5450 -2.4867 -0.0005 6 6 2.2375 -3.6780 -0.0005 7 6 3.6234 -3.6789 -0.0064 8 9 4.2956 -4.8508 -0.0125 9 6 4.3253 -2.4775 -0.0006 10 8 5.6849 -2.4848 -0.0008 11 6 6.3405 -1.2214 0.1251 12 6 7.8509 -1.4393 0.2349 13 6 8.4186 -2.5159 -0.6537 14 1 8.5180 -3.5254 -0.2829 15 6 8.8110 -2.2122 -1.9401 16 7 9.3590 -3.1382 -2.6964 17 14 8.5646 -0.4855 -2.6087 18 1 9.7647 0.3367 -2.3106 19 1 8.3600 -0.5483 -4.0783 20 1 7.3730 0.1277 -1.9689 21 6 8.4947 -1.2446 1.6091 22 6 8.7240 -0.2120 0.5037 23 6 3.6411 -1.2764 -0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.4650 -2.4894 -0.0009 28 1 1.6986 -4.6139 -0.0009 29 1 5.9808 -0.7129 1.0195 30 1 6.1243 -0.6110 -0.7517 31 1 9.6354 -2.9245 -3.6012 32 1 7.8421 -0.9617 2.4351 33 1 9.3290 -1.8955 1.8708 34 1 9.7092 -0.1835 0.0382 35 1 8.2225 0.7508 0.6020 36 1 4.1848 -0.3432 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902856814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:24 Heat of formation + Delta-G solvation = -61.055205 kcal Electronic energy + Delta-G solvation = -21305.976264 eV Core-core repulsion = 17864.531403 eV Total energy + Delta-G solvation = -3441.444861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.60584 -40.25522 -38.99869 -37.42365 -36.16529 -32.07771 -31.68136 -30.62926 -29.13944 -27.01099 -25.40496 -23.73811 -22.47534 -21.72218 -20.10428 -19.14649 -18.05435 -17.08607 -16.74543 -16.19755 -15.90762 -15.74302 -15.12156 -15.03261 -14.83545 -14.51160 -14.27011 -14.12270 -13.40826 -12.89709 -12.74613 -12.60303 -12.54721 -12.44171 -12.10921 -11.84419 -11.30346 -11.22471 -11.08942 -10.55261 -10.35354 -10.18296 -9.92821 -9.68213 -9.13868 -8.99583 -8.59569 -8.55263 -8.00497 -6.08868 -4.10614 0.45177 1.24843 2.24090 3.26489 3.35170 3.36564 3.45909 3.59388 3.85053 4.28498 4.40518 4.56897 4.78485 4.80954 4.86851 5.06626 5.15357 5.15446 5.24300 5.48761 5.51506 5.61000 5.79570 5.82973 5.88151 5.95762 6.01471 6.10427 6.16835 6.23670 6.38532 6.60246 6.64001 6.86830 7.03580 7.35153 7.64807 7.81866 8.52111 8.97024 9.52995 11.03466 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017606 B = 0.005728 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.947050 B = 4886.829188 C = 5491.035515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.396 3.604 3 O -0.458 6.458 4 C -0.149 4.149 5 C -0.097 4.097 6 C -0.132 4.132 7 C 0.098 3.902 8 F -0.122 7.122 9 C 0.102 3.898 10 O -0.264 6.264 11 C 0.089 3.911 12 C -0.004 4.004 13 C -0.473 4.473 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.895 5.895 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.292 1.292 20 H -0.263 1.263 21 C -0.176 4.176 22 C -0.192 4.192 23 C -0.136 4.136 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.061 3.510 6.041 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.275 3.725 3 O -0.333 6.333 4 C -0.151 4.151 5 C -0.116 4.116 6 C -0.151 4.151 7 C 0.078 3.922 8 F -0.100 7.100 9 C 0.053 3.947 10 O -0.176 6.176 11 C 0.014 3.986 12 C -0.005 4.005 13 C -0.511 4.511 14 H 0.099 0.901 15 C -0.124 4.124 16 N -0.533 5.533 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.219 1.219 20 H -0.188 1.188 21 C -0.213 4.213 22 C -0.229 4.229 23 C -0.155 4.155 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.463 3.812 5.831 18.801 hybrid contribution 0.003 0.833 -0.539 0.992 sum -17.460 4.645 5.291 18.826 Atomic orbital electron populations 1.22231 0.93619 1.04902 1.04918 1.22446 0.91669 0.87497 0.70936 1.90556 1.72134 1.34334 1.36320 1.20305 0.93582 0.95049 1.06127 1.21109 1.00008 0.90356 1.00077 1.20909 0.91057 0.99977 1.03115 1.17359 0.89595 0.79835 1.05449 1.91556 1.80426 1.44531 1.93491 1.19212 0.85838 0.92469 0.97171 1.86448 1.11975 1.33531 1.85607 1.22836 0.94278 0.82288 0.99160 1.19260 0.87437 0.96979 0.96848 1.20127 1.40032 0.94822 0.96095 0.90097 1.24956 0.94116 0.96826 0.96532 1.69884 1.40897 1.33467 1.09026 0.86954 0.79349 0.85501 0.77809 1.20199 1.21888 1.18754 1.22917 1.03756 1.02762 0.91855 1.23005 1.02098 0.93036 1.04760 1.21471 0.94056 0.97702 1.02243 0.89610 0.88772 0.88754 0.84071 0.83658 0.93749 0.92082 0.92562 0.90815 0.89045 0.88720 0.90746 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 10.19 36.01 0.37 -1.02 16 2 C 0.40 4.72 7.22 -30.75 -0.22 4.50 16 3 O -0.46 -7.18 17.09 5.57 0.10 -7.09 16 4 C -0.15 -1.93 5.87 -105.08 -0.62 -2.55 16 5 C -0.10 -0.99 9.44 -39.10 -0.37 -1.36 16 6 C -0.13 -1.55 10.00 -39.61 -0.40 -1.94 16 7 C 0.10 1.60 7.32 -39.12 -0.29 1.32 16 8 F -0.12 -2.25 17.10 2.25 0.04 -2.21 16 9 C 0.10 1.87 6.68 -39.25 -0.26 1.61 16 10 O -0.26 -5.90 9.38 -19.63 -0.18 -6.08 16 11 C 0.09 1.90 4.63 37.16 0.17 2.07 16 12 C 0.00 -0.10 1.24 -155.66 -0.19 -0.29 16 13 C -0.47 -13.39 8.82 -34.44 -0.30 -13.70 16 14 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 15 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 16 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 17 Si 0.88 21.76 25.13 -169.99 -4.27 17.48 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.26 -6.14 5.33 56.52 0.30 -5.84 16 21 C -0.18 -3.56 9.88 -26.73 -0.26 -3.82 16 22 C -0.19 -4.00 7.68 -26.74 -0.21 -4.21 16 23 C -0.14 -2.20 8.57 -38.96 -0.33 -2.53 16 24 H 0.09 0.39 5.60 -51.93 -0.29 0.10 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.14 0.85 5.91 -52.49 -0.31 0.54 16 28 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.04 0.82 7.42 -51.93 -0.39 0.43 16 30 H 0.06 1.32 5.80 -51.93 -0.30 1.02 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 33 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 34 H 0.09 2.07 7.29 -51.93 -0.38 1.69 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.15 2.45 5.90 -52.48 -0.31 2.14 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -33.00 308.19 -6.08 -39.08 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.17 Total: 0.72 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -3.01 Total: -19.77 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.77 Total: -26.77 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.09 Total: -13.17 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.27 Total: 17.48 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.00 -6.08 -39.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902856814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.975 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds