Wall clock time and date at job start Tue Mar 31 2020 01:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21267 * 119.99858 * 2 1 4 4 C 1.47019 * 119.99498 * 180.02562 * 2 1 3 5 5 C 1.39940 * 120.12813 * 359.97214 * 4 2 1 6 6 C 1.37800 * 119.95375 * 180.02562 * 5 4 2 7 7 C 1.38593 * 120.20608 * 359.72351 * 6 5 4 8 8 F 1.35100 * 119.87480 * 180.30187 * 7 6 5 9 9 C 1.39142 * 120.25312 * 0.55366 * 7 6 5 10 10 O 1.35964 * 119.98262 * 179.72760 * 9 7 6 11 11 C 1.42901 * 117.00218 * 185.39939 * 10 9 7 12 12 C 1.53000 * 109.46986 * 174.82104 * 11 10 9 13 13 C 1.50698 * 115.55007 * 39.69385 * 12 11 10 14 14 H 1.08002 * 119.99919 * 267.57926 * 13 12 11 15 15 C 1.37878 * 119.99891 * 87.57912 * 13 12 11 16 16 N 1.31519 * 119.99751 * 177.10464 * 15 13 12 17 17 Si 1.86799 * 120.00143 * 357.10645 * 15 13 12 18 18 H 1.48501 * 109.46964 * 89.86301 * 17 15 13 19 19 H 1.48502 * 109.46752 * 209.86336 * 17 15 13 20 20 H 1.48497 * 109.46958 * 329.86029 * 17 15 13 21 21 C 1.52999 * 117.49703 * 253.98256 * 12 11 10 22 22 C 1.52994 * 60.00052 * 252.51253 * 21 12 11 23 23 C 1.38226 * 120.04102 * 359.44931 * 9 7 6 24 24 H 1.08996 * 109.47373 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46479 * 300.00169 * 1 2 3 26 26 H 1.08995 * 109.47005 * 59.99927 * 1 2 3 27 27 H 1.08000 * 120.02085 * 0.04968 * 5 4 2 28 28 H 1.07994 * 119.89563 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.46852 * 54.82202 * 11 10 9 30 30 H 1.08997 * 109.46606 * 294.81967 * 11 10 9 31 31 H 0.96996 * 119.99898 * 180.02562 * 16 15 13 32 32 H 1.08995 * 117.50176 * 0.02562 * 21 12 11 33 33 H 1.09005 * 117.49551 * 145.02433 * 21 12 11 34 34 H 1.09004 * 117.49752 * 252.51230 * 22 21 12 35 35 H 1.09000 * 117.51973 * 107.48591 * 22 21 12 36 36 H 1.08006 * 120.10835 * 180.25387 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2421 -1.2733 -0.0006 5 6 1.5450 -2.4867 -0.0005 6 6 2.2375 -3.6780 -0.0005 7 6 3.6234 -3.6789 -0.0064 8 9 4.2956 -4.8508 -0.0125 9 6 4.3253 -2.4775 -0.0006 10 8 5.6849 -2.4848 -0.0008 11 6 6.3405 -1.2214 0.1251 12 6 7.8509 -1.4393 0.2349 13 6 8.4186 -2.5159 -0.6537 14 1 8.5180 -3.5254 -0.2829 15 6 8.8110 -2.2122 -1.9401 16 7 9.3590 -3.1382 -2.6964 17 14 8.5646 -0.4855 -2.6087 18 1 9.7647 0.3367 -2.3106 19 1 8.3600 -0.5483 -4.0783 20 1 7.3730 0.1277 -1.9689 21 6 8.4947 -1.2446 1.6091 22 6 8.7240 -0.2120 0.5037 23 6 3.6411 -1.2764 -0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.4650 -2.4894 -0.0009 28 1 1.6986 -4.6139 -0.0009 29 1 5.9808 -0.7129 1.0195 30 1 6.1243 -0.6110 -0.7517 31 1 9.6354 -2.9245 -3.6012 32 1 7.8421 -0.9617 2.4351 33 1 9.3290 -1.8955 1.8708 34 1 9.7092 -0.1835 0.0382 35 1 8.2225 0.7508 0.6020 36 1 4.1848 -0.3432 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902856814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:24 Heat of formation + Delta-G solvation = -82.909773 kcal Electronic energy + Delta-G solvation = -21306.923949 eV Core-core repulsion = 17864.531403 eV Total energy + Delta-G solvation = -3442.392546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.92956 -41.40334 -40.24331 -38.82181 -37.66055 -34.28133 -32.63865 -31.70827 -30.12472 -28.56928 -27.42606 -24.79040 -23.65022 -23.38518 -21.23077 -20.93278 -19.26186 -18.70673 -17.93987 -17.69886 -17.36783 -17.02141 -16.75374 -16.06305 -15.97421 -15.85593 -15.75220 -15.41380 -14.84104 -14.76608 -14.16995 -13.93197 -13.67281 -13.30548 -13.17695 -13.06397 -13.03783 -12.74872 -12.29633 -12.22337 -12.06478 -11.91858 -11.62758 -11.02730 -10.86995 -10.72758 -10.37517 -10.09033 -9.28684 -8.32585 -6.38536 -0.61075 0.17573 1.26086 1.28251 1.30582 1.40661 2.09512 2.30936 2.54193 2.94462 3.00717 3.09908 3.16548 3.60172 3.85537 3.92602 4.00726 4.11280 4.16327 4.19527 4.29374 4.44515 4.56182 4.61974 4.72062 4.76353 4.77076 4.91828 4.95009 5.00657 5.09141 5.14209 5.30677 5.39166 5.58187 5.64106 6.22516 6.39215 6.49047 6.68851 7.28572 8.84307 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017606 B = 0.005728 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.947050 B = 4886.829188 C = 5491.035515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.397 3.603 3 O -0.504 6.504 4 C -0.155 4.155 5 C -0.063 4.063 6 C -0.114 4.114 7 C 0.067 3.933 8 F -0.145 7.145 9 C 0.061 3.939 10 O -0.309 6.309 11 C 0.101 3.899 12 C -0.043 4.043 13 C -0.472 4.472 14 H 0.024 0.976 15 C 0.019 3.981 16 N -0.950 5.950 17 Si 0.936 3.064 18 H -0.257 1.257 19 H -0.297 1.297 20 H -0.239 1.239 21 C -0.160 4.160 22 C -0.177 4.177 23 C -0.149 4.149 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.202 0.798 28 H 0.186 0.814 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.297 5.508 6.968 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.279 3.721 3 O -0.383 6.383 4 C -0.156 4.156 5 C -0.080 4.080 6 C -0.132 4.132 7 C 0.047 3.953 8 F -0.124 7.124 9 C 0.015 3.985 10 O -0.223 6.223 11 C 0.026 3.974 12 C -0.044 4.044 13 C -0.510 4.510 14 H 0.042 0.958 15 C -0.178 4.178 16 N -0.590 5.590 17 Si 0.761 3.239 18 H -0.182 1.182 19 H -0.224 1.224 20 H -0.163 1.163 21 C -0.197 4.197 22 C -0.214 4.214 23 C -0.168 4.168 24 H 0.136 0.864 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.219 0.781 28 H 0.203 0.797 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.725 5.810 6.791 23.491 hybrid contribution 1.178 0.077 -0.751 1.399 sum -20.547 5.887 6.040 22.211 Atomic orbital electron populations 1.22294 0.88772 1.07486 1.06159 1.23182 0.93992 0.85986 0.68981 1.90553 1.73538 1.35639 1.38585 1.20744 0.92376 0.97313 1.05179 1.21755 1.02549 0.88139 0.95596 1.21427 0.88759 1.02503 1.00486 1.17991 0.91462 0.78563 1.07309 1.91489 1.81328 1.45610 1.93979 1.19552 0.84406 0.94247 1.00342 1.86355 1.14675 1.34024 1.87207 1.22614 0.92521 0.82395 0.99884 1.19254 0.89140 0.97559 0.98438 1.20216 1.39591 0.94024 0.97140 0.95754 1.25833 0.93864 1.01353 0.96751 1.70049 1.43228 1.36167 1.09585 0.85960 0.80812 0.80460 0.76693 1.18195 1.22405 1.16292 1.22969 1.03220 1.01884 0.91628 1.23051 1.00952 0.93630 1.03796 1.21456 0.95856 0.96196 1.03296 0.86362 0.87240 0.87510 0.78149 0.79702 0.91092 0.93066 0.92572 0.87421 0.90066 0.89868 0.87260 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 10.19 71.24 0.73 -0.83 16 2 C 0.40 8.16 7.22 27.99 0.20 8.36 16 3 O -0.50 -15.08 17.09 -2.99 -0.05 -15.13 16 4 C -0.15 -3.55 5.87 -20.16 -0.12 -3.67 16 5 C -0.06 -0.95 9.44 22.58 0.21 -0.74 16 6 C -0.11 -2.26 10.00 22.25 0.22 -2.04 16 7 C 0.07 2.19 7.32 22.57 0.17 2.35 16 8 F -0.15 -5.63 17.10 44.97 0.77 -4.86 16 9 C 0.06 2.32 6.68 22.48 0.15 2.47 16 10 O -0.31 -14.58 9.38 -93.15 -0.87 -15.46 16 11 C 0.10 4.35 4.63 71.98 0.33 4.68 16 12 C -0.04 -2.05 1.24 -52.93 -0.07 -2.12 16 13 C -0.47 -28.35 8.82 25.60 0.23 -28.12 16 14 H 0.02 1.67 8.06 -2.91 -0.02 1.65 16 15 C 0.02 1.14 5.47 84.65 0.46 1.60 16 16 N -0.95 -61.92 13.96 21.45 0.30 -61.62 16 17 Si 0.94 45.74 25.13 68.60 1.72 47.47 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 20 H -0.24 -10.70 5.33 99.48 0.53 -10.17 16 21 C -0.16 -6.38 9.88 30.59 0.30 -6.08 16 22 C -0.18 -7.13 7.68 30.59 0.23 -6.89 16 23 C -0.15 -4.79 8.57 22.67 0.19 -4.60 16 24 H 0.12 0.15 5.60 -2.39 -0.01 0.14 16 25 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.20 0.68 5.91 -2.91 -0.02 0.67 16 28 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.07 2.59 7.42 -2.39 -0.02 2.58 16 30 H 0.05 2.24 5.80 -2.39 -0.01 2.22 16 31 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 32 H 0.11 3.55 8.08 -2.39 -0.02 3.53 16 33 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 34 H 0.08 3.53 7.29 -2.39 -0.02 3.52 16 35 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.13 4.50 5.90 -2.91 -0.02 4.48 16 Total: -1.00 -81.63 308.19 6.05 -75.58 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.93 Total: 9.63 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 3.25 Total: -35.61 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.30 Total: -61.62 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.92 Total: -30.58 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.77 Total: -4.86 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.72 Total: 47.47 kcal Total: -81.63 6.05 -75.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902856814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.330 kcal (2) G-P(sol) polarization free energy of solvation -81.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds