Wall clock time and date at job start Tue Mar 31 2020 01:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47303 * 2 1 4 4 C 1.46492 * 120.00326 * 84.99478 * 3 2 1 5 5 C 1.50699 * 109.47152 * 85.37437 * 4 3 2 6 6 H 1.08004 * 119.99681 * 3.59065 * 5 4 3 7 7 C 1.37877 * 120.00290 * 183.59226 * 5 4 3 8 8 N 1.31517 * 120.00233 * 174.08713 * 7 5 4 9 9 Si 1.86793 * 119.99966 * 354.08889 * 7 5 4 10 10 H 1.48502 * 109.47465 * 89.99739 * 9 7 5 11 11 H 1.48501 * 109.47533 * 210.00007 * 9 7 5 12 12 H 1.48499 * 109.47284 * 329.99929 * 9 7 5 13 13 S 1.65604 * 119.99646 * 265.27696 * 3 2 1 14 14 O 1.42099 * 106.40484 * 28.47449 * 13 3 2 15 15 O 1.42097 * 106.40295 * 161.39634 * 13 3 2 16 16 N 1.65599 * 107.21586 * 274.93361 * 13 3 2 17 17 C 1.47063 * 136.05798 * 273.55467 * 16 13 3 18 18 C 1.53504 * 87.98777 * 207.08594 * 17 16 13 19 19 C 1.47068 * 136.05537 * 93.18712 * 16 13 3 20 20 H 1.09002 * 113.46234 * 267.69108 * 19 16 13 21 21 C 1.52992 * 113.47139 * 38.13049 * 19 16 13 22 22 O 1.42905 * 109.47212 * 63.97555 * 21 19 16 23 23 H 1.09003 * 109.47467 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47449 * 300.00163 * 1 2 3 25 25 H 1.08997 * 109.47083 * 60.00261 * 1 2 3 26 26 H 1.08999 * 109.46905 * 239.99378 * 2 1 3 27 27 H 1.08997 * 109.47083 * 119.99738 * 2 1 3 28 28 H 1.09004 * 109.47374 * 205.37424 * 4 3 2 29 29 H 1.08999 * 109.47663 * 325.37470 * 4 3 2 30 30 H 0.96993 * 120.00027 * 179.97438 * 8 7 5 31 31 H 1.09001 * 113.46856 * 321.86618 * 17 16 13 32 32 H 1.08999 * 113.47097 * 92.24494 * 17 16 13 33 33 H 1.08996 * 114.20355 * 87.51415 * 18 17 16 34 34 H 1.08997 * 114.20611 * 220.15141 * 18 17 16 35 35 H 1.08998 * 109.47280 * 183.97529 * 21 19 16 36 36 H 1.08998 * 109.47272 * 303.97777 * 21 19 16 37 37 H 0.96692 * 114.00561 * 184.95246 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 1.2638 5 6 3.4984 1.7960 1.8778 6 1 4.2013 1.1690 1.3494 7 6 3.8273 2.3103 3.1140 8 7 4.9457 1.9453 3.7018 9 14 2.6842 3.5255 3.9542 10 1 1.7094 2.7871 4.7967 11 1 3.4794 4.4446 4.8074 12 1 1.9549 4.3110 2.9264 13 16 2.4057 2.1224 -1.4294 14 8 1.5894 1.5231 -2.4263 15 8 2.4138 3.5190 -1.1678 16 7 3.9671 1.7052 -1.7904 17 6 5.3044 2.2173 -1.4556 18 6 5.8037 1.6249 -2.7807 19 6 4.6267 0.6557 -2.5818 20 1 4.8862 -0.2284 -1.9995 21 6 3.8890 0.3156 -3.8782 22 8 3.8867 1.4568 -4.7384 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0855 3.1800 1.0763 29 1 1.3656 1.8050 1.9476 30 1 5.1772 2.3074 4.5713 31 1 5.3561 3.3055 -1.4197 32 1 5.7421 1.7456 -0.5758 33 1 5.6980 2.2918 -3.6363 34 1 6.7856 1.1559 -2.7187 35 1 4.3920 -0.5134 -4.3758 36 1 2.8620 0.0321 -3.6482 37 1 3.3709 1.3384 -5.5477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907830434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:53 Heat of formation + Delta-G solvation = -84.819787 kcal Electronic energy + Delta-G solvation = -21592.446227 eV Core-core repulsion = 18305.334770 eV Total energy + Delta-G solvation = -3287.111458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.33779 -36.66156 -36.13540 -35.97960 -35.17925 -32.63983 -30.22673 -28.69074 -28.06647 -27.10112 -22.91031 -22.77593 -21.55455 -20.80996 -18.22842 -17.51780 -16.98850 -16.86000 -16.45239 -15.86365 -15.20993 -15.01331 -14.30080 -14.05979 -13.53610 -13.28478 -13.02440 -12.75231 -12.46270 -12.43227 -12.11925 -12.07399 -11.87042 -11.60353 -11.45032 -11.36793 -11.13252 -10.98693 -10.67245 -10.57744 -10.30006 -10.14996 -10.12548 -9.85151 -9.59499 -8.72472 -8.61068 -8.08477 -6.16590 -4.15498 1.22751 3.24636 3.32716 3.40604 3.42261 4.10148 4.29119 4.36213 4.65285 4.80205 5.11493 5.15842 5.17192 5.31956 5.40457 5.51277 5.64320 5.71553 5.76454 5.88584 6.00143 6.02913 6.13427 6.21855 6.31186 6.51283 6.57580 6.63905 6.84864 6.94379 7.17886 7.43870 7.56409 7.70709 8.41222 8.85876 9.45269 10.95895 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.007563 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.898946 B = 3701.385269 C = 4316.580997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.214 3.786 5 C -0.539 4.539 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.894 5.894 9 Si 0.866 3.134 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.261 1.261 13 S 2.808 3.192 14 O -0.991 6.991 15 O -0.977 6.977 16 N -1.031 6.031 17 C 0.132 3.868 18 C -0.141 4.141 19 C 0.150 3.850 20 H 0.101 0.899 21 C 0.059 3.941 22 O -0.564 6.564 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.345 -5.334 -12.547 13.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.831 5.831 4 C 0.090 3.910 5 C -0.578 4.578 6 H 0.097 0.903 7 C -0.127 4.127 8 N -0.532 5.532 9 Si 0.693 3.307 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.185 1.185 13 S 2.819 3.181 14 O -0.975 6.975 15 O -0.961 6.961 16 N -0.870 5.870 17 C 0.006 3.994 18 C -0.180 4.180 19 C 0.043 3.957 20 H 0.119 0.881 21 C -0.020 4.020 22 O -0.369 6.369 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.678 -4.421 -12.328 13.204 hybrid contribution -0.703 0.000 0.666 0.969 sum -2.381 -4.421 -11.662 12.697 Atomic orbital electron populations 1.22229 0.96911 1.01510 1.02374 1.20960 0.93533 0.82826 1.02228 1.57713 1.78782 1.22899 1.23693 1.19550 0.97931 0.92378 0.81143 1.21423 1.00284 1.32421 1.03631 0.90278 1.24834 0.95187 0.95949 0.96714 1.69894 1.23888 1.43360 1.16035 0.86965 0.81398 0.82195 0.80170 1.20035 1.20843 1.18511 1.01086 0.71589 0.73195 0.72212 1.93500 1.66069 1.79216 1.58731 1.93549 1.86297 1.30714 1.85578 1.60618 1.20893 1.42397 1.63117 1.22362 0.79585 1.00340 0.97071 1.23466 0.96602 0.98979 0.99000 1.22263 0.91445 0.92354 0.89590 0.88090 1.22451 1.00699 0.87890 0.90911 1.86462 1.75363 1.39480 1.35547 0.92210 0.92301 0.92411 0.92122 0.90016 0.93689 0.95057 0.92524 0.90615 0.89291 0.88020 0.90368 0.92699 0.91547 0.77747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.27 6.05 -4.05 -0.02 2.25 16 3 N -0.99 -20.69 2.82 -115.67 -0.33 -21.02 16 4 C 0.21 5.14 4.50 -5.20 -0.02 5.12 16 5 C -0.54 -14.50 9.93 -34.44 -0.34 -14.85 16 6 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 7 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 9 Si 0.87 21.10 27.46 -169.99 -4.67 16.43 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.26 -6.30 6.60 56.52 0.37 -5.93 16 13 S 2.81 58.48 6.62 -107.50 -0.71 57.77 16 14 O -0.99 -20.15 15.10 -57.17 -0.86 -21.01 16 15 O -0.98 -23.90 16.60 -57.17 -0.95 -24.85 16 16 N -1.03 -18.46 4.13 -117.74 -0.49 -18.94 16 17 C 0.13 2.18 8.72 -8.50 -0.07 2.10 16 18 C -0.14 -1.82 7.85 -26.08 -0.20 -2.03 16 19 C 0.15 2.08 4.64 -72.26 -0.34 1.75 16 20 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 21 C 0.06 0.74 6.84 37.15 0.25 0.99 16 22 O -0.56 -7.34 12.16 -35.23 -0.43 -7.77 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 26 H 0.06 0.93 7.76 -51.93 -0.40 0.53 16 27 H 0.08 1.44 8.11 -51.93 -0.42 1.01 16 28 H 0.05 1.16 5.98 -51.93 -0.31 0.85 16 29 H 0.03 0.73 7.53 -51.93 -0.39 0.33 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.10 1.37 6.97 -51.93 -0.36 1.01 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.91 6.65 -51.93 -0.35 0.57 16 37 H 0.38 3.29 9.12 45.56 0.42 3.71 16 LS Contribution 317.36 15.07 4.78 4.78 Total: -1.00 -33.81 317.36 -8.12 -41.93 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.78 Total: 2.93 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.47 Total: -4.89 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -0.04 Total: -65.33 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -2.24 Total: -53.62 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 58.48 SS G_CDS: -0.71 Total: 57.77 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.81 -8.12 -41.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907830434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.888 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds