Wall clock time and date at job start Tue Mar 31 2020 01:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47303 * 2 1 4 4 C 1.46492 * 120.00326 * 84.99478 * 3 2 1 5 5 C 1.50699 * 109.47152 * 85.37437 * 4 3 2 6 6 H 1.08004 * 119.99681 * 3.59065 * 5 4 3 7 7 C 1.37877 * 120.00290 * 183.59226 * 5 4 3 8 8 N 1.31517 * 120.00233 * 174.08713 * 7 5 4 9 9 Si 1.86793 * 119.99966 * 354.08889 * 7 5 4 10 10 H 1.48502 * 109.47465 * 89.99739 * 9 7 5 11 11 H 1.48501 * 109.47533 * 210.00007 * 9 7 5 12 12 H 1.48499 * 109.47284 * 329.99929 * 9 7 5 13 13 S 1.65604 * 119.99646 * 265.27696 * 3 2 1 14 14 O 1.42099 * 106.40484 * 28.47449 * 13 3 2 15 15 O 1.42097 * 106.40295 * 161.39634 * 13 3 2 16 16 N 1.65599 * 107.21586 * 274.93361 * 13 3 2 17 17 C 1.47063 * 136.05798 * 273.55467 * 16 13 3 18 18 C 1.53504 * 87.98777 * 207.08594 * 17 16 13 19 19 C 1.47068 * 136.05537 * 93.18712 * 16 13 3 20 20 H 1.09002 * 113.46234 * 267.69108 * 19 16 13 21 21 C 1.52992 * 113.47139 * 38.13049 * 19 16 13 22 22 O 1.42905 * 109.47212 * 63.97555 * 21 19 16 23 23 H 1.09003 * 109.47467 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47449 * 300.00163 * 1 2 3 25 25 H 1.08997 * 109.47083 * 60.00261 * 1 2 3 26 26 H 1.08999 * 109.46905 * 239.99378 * 2 1 3 27 27 H 1.08997 * 109.47083 * 119.99738 * 2 1 3 28 28 H 1.09004 * 109.47374 * 205.37424 * 4 3 2 29 29 H 1.08999 * 109.47663 * 325.37470 * 4 3 2 30 30 H 0.96993 * 120.00027 * 179.97438 * 8 7 5 31 31 H 1.09001 * 113.46856 * 321.86618 * 17 16 13 32 32 H 1.08999 * 113.47097 * 92.24494 * 17 16 13 33 33 H 1.08996 * 114.20355 * 87.51415 * 18 17 16 34 34 H 1.08997 * 114.20611 * 220.15141 * 18 17 16 35 35 H 1.08998 * 109.47280 * 183.97529 * 21 19 16 36 36 H 1.08998 * 109.47272 * 303.97777 * 21 19 16 37 37 H 0.96692 * 114.00561 * 184.95246 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 1.2638 5 6 3.4984 1.7960 1.8778 6 1 4.2013 1.1690 1.3494 7 6 3.8273 2.3103 3.1140 8 7 4.9457 1.9453 3.7018 9 14 2.6842 3.5255 3.9542 10 1 1.7094 2.7871 4.7967 11 1 3.4794 4.4446 4.8074 12 1 1.9549 4.3110 2.9264 13 16 2.4057 2.1224 -1.4294 14 8 1.5894 1.5231 -2.4263 15 8 2.4138 3.5190 -1.1678 16 7 3.9671 1.7052 -1.7904 17 6 5.3044 2.2173 -1.4556 18 6 5.8037 1.6249 -2.7807 19 6 4.6267 0.6557 -2.5818 20 1 4.8862 -0.2284 -1.9995 21 6 3.8890 0.3156 -3.8782 22 8 3.8867 1.4568 -4.7384 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0855 3.1800 1.0763 29 1 1.3656 1.8050 1.9476 30 1 5.1772 2.3074 4.5713 31 1 5.3561 3.3055 -1.4197 32 1 5.7421 1.7456 -0.5758 33 1 5.6980 2.2918 -3.6363 34 1 6.7856 1.1559 -2.7187 35 1 4.3920 -0.5134 -4.3758 36 1 2.8620 0.0321 -3.6482 37 1 3.3709 1.3384 -5.5477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907830434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:52 Heat of formation + Delta-G solvation = -112.876462 kcal Electronic energy + Delta-G solvation = -21593.662856 eV Core-core repulsion = 18305.334770 eV Total energy + Delta-G solvation = -3288.328087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52055 -38.32690 -37.77464 -37.04230 -36.84405 -34.68687 -31.84369 -29.84300 -29.29596 -28.91147 -24.62088 -23.91863 -23.20089 -22.07741 -19.65678 -19.11902 -18.68222 -18.45982 -17.75374 -17.44350 -16.48280 -16.34274 -16.09829 -15.54450 -14.92599 -14.76614 -14.48497 -14.26620 -14.18507 -13.80708 -13.60253 -13.51183 -13.24643 -13.17873 -13.08899 -12.82845 -12.75664 -12.67939 -12.34549 -12.09090 -11.84895 -11.74742 -11.61046 -11.24898 -10.82302 -10.77548 -10.08091 -9.74759 -8.31297 -6.33651 -0.35699 1.31552 1.36835 1.47327 1.90587 2.32649 2.55661 3.02779 3.18603 3.34802 3.68795 3.84219 3.94444 4.13961 4.33410 4.41104 4.45522 4.50881 4.64967 4.66193 4.71918 4.79100 4.86006 4.91464 4.96979 5.04687 5.10995 5.35561 5.36589 5.46066 5.46576 5.72758 5.82631 6.29905 6.68792 6.96115 7.29888 8.83652 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.007563 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.898946 B = 3701.385269 C = 4316.580997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.997 5.997 4 C 0.222 3.778 5 C -0.535 4.535 6 H 0.056 0.944 7 C 0.026 3.974 8 N -0.932 5.932 9 Si 0.919 3.081 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.261 1.261 13 S 2.813 3.187 14 O -0.989 6.989 15 O -1.021 7.021 16 N -1.041 6.041 17 C 0.120 3.880 18 C -0.116 4.116 19 C 0.142 3.858 20 H 0.121 0.879 21 C 0.060 3.940 22 O -0.584 6.584 23 H 0.092 0.908 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.027 0.973 29 H 0.043 0.957 30 H 0.267 0.733 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 -6.537 -13.492 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.097 3.903 5 C -0.574 4.574 6 H 0.074 0.926 7 C -0.174 4.174 8 N -0.572 5.572 9 Si 0.743 3.257 10 H -0.182 1.182 11 H -0.205 1.205 12 H -0.185 1.185 13 S 2.825 3.175 14 O -0.973 6.973 15 O -1.006 7.006 16 N -0.883 5.883 17 C -0.006 4.006 18 C -0.155 4.155 19 C 0.037 3.963 20 H 0.139 0.861 21 C -0.019 4.019 22 O -0.392 6.392 23 H 0.111 0.889 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.082 -5.652 -13.302 14.602 hybrid contribution -0.512 0.298 0.866 1.049 sum -2.594 -5.353 -12.436 13.785 Atomic orbital electron populations 1.22208 0.95251 1.03491 1.01704 1.21240 0.94982 0.81052 1.03055 1.57706 1.79457 1.24160 1.22352 1.19264 0.96643 0.91832 0.82582 1.21600 1.01075 1.31371 1.03372 0.92591 1.25564 0.96619 0.97585 0.97618 1.70000 1.25634 1.44858 1.16695 0.86109 0.79948 0.80261 0.79339 1.18188 1.20458 1.18505 1.00729 0.72278 0.72365 0.72151 1.93489 1.66684 1.78811 1.58344 1.93485 1.87253 1.33663 1.86172 1.60545 1.20187 1.44093 1.63485 1.22493 0.79456 0.99591 0.99035 1.23355 0.97927 0.98075 0.96163 1.22712 0.91173 0.92343 0.90106 0.86103 1.22499 1.00086 0.88782 0.90517 1.86415 1.75942 1.40211 1.36621 0.88926 0.92853 0.93165 0.90061 0.90406 0.95487 0.93859 0.92340 0.92167 0.90342 0.88304 0.86882 0.88711 0.93041 0.75747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 10.24 71.98 0.74 -4.10 16 2 C 0.12 4.07 6.05 86.38 0.52 4.59 16 3 N -1.00 -41.42 2.82 -519.88 -1.47 -42.89 16 4 C 0.22 10.70 4.50 85.63 0.39 11.09 16 5 C -0.54 -29.18 9.93 25.60 0.25 -28.93 16 6 H 0.06 3.24 8.06 -2.91 -0.02 3.22 16 7 C 0.03 1.44 5.47 84.65 0.46 1.91 16 8 N -0.93 -55.17 13.96 21.45 0.30 -54.88 16 9 Si 0.92 43.30 27.46 68.60 1.88 45.18 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.26 -12.20 6.60 99.48 0.66 -11.54 16 13 S 2.81 117.31 6.62 -56.49 -0.37 116.94 16 14 O -0.99 -39.45 15.10 -128.00 -1.93 -41.38 16 15 O -1.02 -51.15 16.60 -128.00 -2.13 -53.28 16 16 N -1.04 -36.84 4.13 -526.41 -2.17 -39.01 16 17 C 0.12 3.96 8.72 83.18 0.73 4.69 16 18 C -0.12 -2.74 7.85 31.02 0.24 -2.50 16 19 C 0.14 3.62 4.64 41.88 0.19 3.82 16 20 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 21 C 0.06 1.32 6.84 71.98 0.49 1.81 16 22 O -0.58 -13.92 12.16 -148.98 -1.81 -15.73 16 23 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 1.52 7.98 -2.39 -0.02 1.50 16 26 H 0.08 2.35 7.76 -2.39 -0.02 2.33 16 27 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 28 H 0.03 1.41 5.98 -2.38 -0.01 1.40 16 29 H 0.04 1.97 7.53 -2.39 -0.02 1.96 16 30 H 0.27 14.90 8.31 -92.71 -0.77 14.12 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.10 2.46 6.97 -2.39 -0.02 2.44 16 34 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.30 6.65 -2.39 -0.02 1.28 16 37 H 0.39 6.03 9.12 -74.06 -0.68 5.35 16 Total: -1.00 -73.24 317.36 -3.34 -76.58 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.34 Total: 16.09 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 4.02 Total: -7.63 kcal Atomic # 7 Polarization: -133.43 SS G_CDS: -3.34 Total: -136.77 kcal Atomic # 8 Polarization: -104.52 SS G_CDS: -5.87 Total: -110.39 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.18 kcal Atomic # 16 Polarization: 117.31 SS G_CDS: -0.37 Total: 116.94 kcal Total: -73.24 -3.34 -76.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907830434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.299 kcal (2) G-P(sol) polarization free energy of solvation -73.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds