Wall clock time and date at job start Tue Mar 31 2020 01:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47121 * 2 1 4 4 C 1.46500 * 119.99968 * 274.84154 * 3 2 1 5 5 C 1.50698 * 109.47292 * 275.00248 * 4 3 2 6 6 H 1.08003 * 119.99690 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00011 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99987 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00056 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46844 * 90.00660 * 9 7 5 11 11 H 1.48494 * 109.47185 * 210.00253 * 9 7 5 12 12 H 1.48496 * 109.46950 * 330.00779 * 9 7 5 13 13 S 1.65602 * 120.00021 * 94.84172 * 3 2 1 14 14 O 1.42099 * 106.40054 * 150.71072 * 13 3 2 15 15 O 1.42094 * 106.40396 * 17.78562 * 13 3 2 16 16 N 1.65599 * 107.21625 * 264.24596 * 13 3 2 17 17 C 1.47066 * 136.05605 * 85.37049 * 16 13 3 18 18 C 1.53494 * 87.98680 * 153.13351 * 17 16 13 19 19 C 1.47073 * 136.05784 * 265.73346 * 16 13 3 20 20 H 1.08998 * 113.46317 * 92.08773 * 19 16 13 21 21 C 1.52999 * 113.46851 * 321.64568 * 19 16 13 22 22 O 1.42898 * 109.47163 * 295.91323 * 21 19 16 23 23 H 1.09002 * 109.46945 * 184.81726 * 1 2 3 24 24 H 1.09003 * 109.47336 * 304.81643 * 1 2 3 25 25 H 1.08996 * 109.47191 * 64.81537 * 1 2 3 26 26 H 1.08997 * 109.47345 * 239.99982 * 2 1 3 27 27 H 1.09005 * 109.47035 * 119.99607 * 2 1 3 28 28 H 1.09004 * 109.47006 * 35.00321 * 4 3 2 29 29 H 1.08994 * 109.47067 * 154.99469 * 4 3 2 30 30 H 0.96999 * 119.99747 * 179.97438 * 8 7 5 31 31 H 1.09000 * 113.46743 * 267.91525 * 17 16 13 32 32 H 1.09003 * 113.47018 * 38.35138 * 17 16 13 33 33 H 1.08997 * 114.21032 * 272.47932 * 18 17 16 34 34 H 1.09005 * 114.20863 * 139.64986 * 18 17 16 35 35 H 1.09006 * 109.46703 * 55.91182 * 21 19 16 36 36 H 1.08998 * 109.47094 * 175.90840 * 21 19 16 37 37 H 0.96699 * 113.99782 * 184.98627 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1615 2.1075 -1.2642 5 6 3.4996 1.7870 -1.8789 6 1 4.1759 1.1104 -1.3777 7 6 3.8608 2.3585 -3.0805 8 7 5.0284 2.0784 -3.6172 9 14 2.6913 3.5295 -3.9469 10 1 2.9540 4.9184 -3.4916 11 1 2.9003 3.4419 -5.4145 12 1 1.2902 3.1591 -3.6234 13 16 2.4084 2.1215 1.4290 14 8 3.4253 3.0668 1.1266 15 8 2.5711 1.0846 2.3868 16 7 1.0848 2.9951 1.9058 17 6 -0.1499 2.7218 2.6565 18 6 -0.1663 4.2019 3.0628 19 6 0.6238 4.3840 1.7594 20 1 -0.0094 4.5413 0.8863 21 6 1.7496 5.4143 1.8682 22 8 2.3121 5.3684 3.1810 23 1 -0.3633 -1.0241 0.0863 24 1 -0.3634 0.5868 0.8437 25 1 -0.3633 0.4373 -0.9299 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3667 1.8079 -1.9474 29 1 2.0948 3.1792 -1.0771 30 1 5.2824 2.4802 -4.4628 31 1 -0.9893 2.4365 2.0223 32 1 -0.0059 2.0426 3.4967 33 1 0.4031 4.4240 3.9653 34 1 -1.1565 4.6574 3.0524 35 1 2.5223 5.1871 1.1337 36 1 1.3500 6.4105 1.6787 37 1 2.9808 6.0472 3.3463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907830435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:55 Heat of formation + Delta-G solvation = -81.904964 kcal Electronic energy + Delta-G solvation = -21588.181489 eV Core-core repulsion = 18301.196428 eV Total energy + Delta-G solvation = -3286.985062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.55593 -36.63577 -36.13331 -36.00278 -35.09970 -32.59725 -30.27099 -28.81658 -28.22663 -27.11918 -23.02887 -22.90297 -21.59185 -20.94222 -18.27454 -17.56449 -16.95440 -16.86464 -16.50426 -15.90394 -15.37165 -15.07662 -14.28387 -14.03726 -13.54950 -13.44585 -13.17164 -12.77433 -12.59638 -12.49530 -12.25018 -11.99047 -11.98290 -11.81813 -11.42462 -11.35403 -11.11051 -10.97616 -10.78365 -10.48995 -10.37535 -10.35984 -10.20238 -9.76690 -9.56041 -8.93498 -8.60709 -8.10586 -6.09020 -4.07822 1.14454 3.23273 3.28494 3.29835 3.40674 4.09136 4.25754 4.35913 4.49656 4.67900 4.93497 5.01428 5.19875 5.29192 5.36361 5.42040 5.50939 5.57869 5.63733 5.67647 5.78178 5.91086 5.95682 6.15206 6.21319 6.31187 6.47485 6.53028 6.71858 6.74155 7.11838 7.44064 7.57640 7.73119 8.49151 8.97011 9.49891 11.04727 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.007887 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.397120 B = 3549.197026 C = 4094.648873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.990 5.990 4 C 0.231 3.769 5 C -0.528 4.528 6 H 0.078 0.922 7 C 0.072 3.928 8 N -0.895 5.895 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.800 3.200 14 O -0.953 6.953 15 O -0.990 6.990 16 N -1.038 6.038 17 C 0.122 3.878 18 C -0.139 4.139 19 C 0.151 3.849 20 H 0.101 0.899 21 C 0.055 3.945 22 O -0.565 6.565 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.022 0.978 30 H 0.264 0.736 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 4.830 10.546 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.830 5.830 4 C 0.108 3.892 5 C -0.568 4.568 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.190 1.190 13 S 2.811 3.189 14 O -0.937 6.937 15 O -0.975 6.975 16 N -0.877 5.877 17 C -0.004 4.004 18 C -0.178 4.178 19 C 0.044 3.956 20 H 0.118 0.882 21 C -0.024 4.024 22 O -0.371 6.371 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -13.144 4.147 10.807 17.514 hybrid contribution -0.399 1.063 -1.159 1.622 sum -13.543 5.210 9.648 17.425 Atomic orbital electron populations 1.22246 0.97290 1.01457 1.01799 1.21171 0.93002 0.83064 1.03853 1.57708 1.81105 1.21480 1.22707 1.19337 0.98150 0.90548 0.81202 1.21386 1.00715 1.28854 1.05803 0.90427 1.24878 0.95060 0.96143 0.96952 1.69901 1.20439 1.44029 1.18970 0.86931 0.81822 0.82122 0.79291 1.19903 1.20932 1.19009 1.01486 0.72615 0.72501 0.72344 1.93599 1.52906 1.62857 1.84367 1.93508 1.85304 1.57450 1.61196 1.61008 1.35611 1.21288 1.69804 1.22340 0.85765 0.97723 0.94618 1.23419 0.99965 0.95741 0.98693 1.22208 0.93803 0.80919 0.98627 0.88161 1.22478 0.96516 0.97564 0.85855 1.86412 1.59701 1.59323 1.31639 0.92023 0.93414 0.92273 0.89500 0.90345 0.95052 0.96010 0.92555 0.90513 0.90499 0.87645 0.90390 0.90686 0.92601 0.77494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.12 2.07 6.37 -4.04 -0.03 2.04 16 3 N -0.99 -20.79 2.82 -115.67 -0.33 -21.12 16 4 C 0.23 5.47 4.16 -5.19 -0.02 5.45 16 5 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 6 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -27.62 13.96 55.43 0.77 -26.85 16 9 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 13 S 2.80 58.73 6.61 -107.50 -0.71 58.02 16 14 O -0.95 -23.25 15.28 -57.17 -0.87 -24.13 16 15 O -0.99 -22.20 16.60 -57.17 -0.95 -23.14 16 16 N -1.04 -16.59 4.13 -117.87 -0.49 -17.08 16 17 C 0.12 1.44 8.40 -8.50 -0.07 1.37 16 18 C -0.14 -1.45 7.85 -26.22 -0.21 -1.65 16 19 C 0.15 1.96 4.64 -72.38 -0.34 1.62 16 20 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 21 C 0.05 0.74 6.86 37.16 0.25 0.99 16 22 O -0.57 -7.63 12.14 -35.23 -0.43 -8.06 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.62 7.41 -51.93 -0.38 0.23 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.09 1.60 8.11 -51.93 -0.42 1.18 16 27 H 0.08 1.38 6.88 -51.93 -0.36 1.03 16 28 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 29 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 1.22 6.94 -51.93 -0.36 0.86 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.26 6.62 -51.93 -0.34 0.91 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.38 3.54 9.12 45.56 0.42 3.96 16 LS Contribution 316.08 15.07 4.76 4.76 Total: -1.00 -36.42 316.08 -8.10 -44.51 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.73 Total: 2.52 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.46 Total: -5.68 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -0.04 Total: -65.05 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -2.25 Total: -55.33 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Atomic # 16 Polarization: 58.73 SS G_CDS: -0.71 Total: 58.02 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.42 -8.10 -44.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907830435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.391 kcal (2) G-P(sol) polarization free energy of solvation -36.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds