Wall clock time and date at job start Tue Mar 31 2020 01:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47121 * 2 1 4 4 C 1.46500 * 119.99968 * 274.84154 * 3 2 1 5 5 C 1.50698 * 109.47292 * 275.00248 * 4 3 2 6 6 H 1.08003 * 119.99690 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00011 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99987 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00056 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46844 * 90.00660 * 9 7 5 11 11 H 1.48494 * 109.47185 * 210.00253 * 9 7 5 12 12 H 1.48496 * 109.46950 * 330.00779 * 9 7 5 13 13 S 1.65602 * 120.00021 * 94.84172 * 3 2 1 14 14 O 1.42099 * 106.40054 * 150.71072 * 13 3 2 15 15 O 1.42094 * 106.40396 * 17.78562 * 13 3 2 16 16 N 1.65599 * 107.21625 * 264.24596 * 13 3 2 17 17 C 1.47066 * 136.05605 * 85.37049 * 16 13 3 18 18 C 1.53494 * 87.98680 * 153.13351 * 17 16 13 19 19 C 1.47073 * 136.05784 * 265.73346 * 16 13 3 20 20 H 1.08998 * 113.46317 * 92.08773 * 19 16 13 21 21 C 1.52999 * 113.46851 * 321.64568 * 19 16 13 22 22 O 1.42898 * 109.47163 * 295.91323 * 21 19 16 23 23 H 1.09002 * 109.46945 * 184.81726 * 1 2 3 24 24 H 1.09003 * 109.47336 * 304.81643 * 1 2 3 25 25 H 1.08996 * 109.47191 * 64.81537 * 1 2 3 26 26 H 1.08997 * 109.47345 * 239.99982 * 2 1 3 27 27 H 1.09005 * 109.47035 * 119.99607 * 2 1 3 28 28 H 1.09004 * 109.47006 * 35.00321 * 4 3 2 29 29 H 1.08994 * 109.47067 * 154.99469 * 4 3 2 30 30 H 0.96999 * 119.99747 * 179.97438 * 8 7 5 31 31 H 1.09000 * 113.46743 * 267.91525 * 17 16 13 32 32 H 1.09003 * 113.47018 * 38.35138 * 17 16 13 33 33 H 1.08997 * 114.21032 * 272.47932 * 18 17 16 34 34 H 1.09005 * 114.20863 * 139.64986 * 18 17 16 35 35 H 1.09006 * 109.46703 * 55.91182 * 21 19 16 36 36 H 1.08998 * 109.47094 * 175.90840 * 21 19 16 37 37 H 0.96699 * 113.99782 * 184.98627 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1615 2.1075 -1.2642 5 6 3.4996 1.7870 -1.8789 6 1 4.1759 1.1104 -1.3777 7 6 3.8608 2.3585 -3.0805 8 7 5.0284 2.0784 -3.6172 9 14 2.6913 3.5295 -3.9469 10 1 2.9540 4.9184 -3.4916 11 1 2.9003 3.4419 -5.4145 12 1 1.2902 3.1591 -3.6234 13 16 2.4084 2.1215 1.4290 14 8 3.4253 3.0668 1.1266 15 8 2.5711 1.0846 2.3868 16 7 1.0848 2.9951 1.9058 17 6 -0.1499 2.7218 2.6565 18 6 -0.1663 4.2019 3.0628 19 6 0.6238 4.3840 1.7594 20 1 -0.0094 4.5413 0.8863 21 6 1.7496 5.4143 1.8682 22 8 2.3121 5.3684 3.1810 23 1 -0.3633 -1.0241 0.0863 24 1 -0.3634 0.5868 0.8437 25 1 -0.3633 0.4373 -0.9299 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3667 1.8079 -1.9474 29 1 2.0948 3.1792 -1.0771 30 1 5.2824 2.4802 -4.4628 31 1 -0.9893 2.4365 2.0223 32 1 -0.0059 2.0426 3.4967 33 1 0.4031 4.4240 3.9653 34 1 -1.1565 4.6574 3.0524 35 1 2.5223 5.1871 1.1337 36 1 1.3500 6.4105 1.6787 37 1 2.9808 6.0472 3.3463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907830435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:55 Heat of formation + Delta-G solvation = -113.751275 kcal Electronic energy + Delta-G solvation = -21589.562449 eV Core-core repulsion = 18301.196428 eV Total energy + Delta-G solvation = -3288.366021 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.55139 -38.32050 -37.76757 -37.06123 -36.80978 -34.70497 -31.86183 -29.88476 -29.24629 -28.94413 -24.63587 -23.96432 -23.21824 -22.04254 -19.62785 -19.17647 -18.71309 -18.40322 -17.78805 -17.44640 -16.50293 -16.31158 -16.08703 -15.54274 -14.86636 -14.77623 -14.61532 -14.34827 -14.12820 -13.73946 -13.59025 -13.54930 -13.19091 -13.16140 -13.08515 -12.83557 -12.75600 -12.58438 -12.21105 -12.10230 -11.83851 -11.73624 -11.62860 -11.29632 -10.82527 -10.80434 -10.07763 -9.77467 -8.30703 -6.37115 -0.41022 1.33956 1.38588 1.47756 1.99172 2.33692 2.58962 3.02362 3.19681 3.35601 3.68981 3.84105 3.93986 4.14244 4.36415 4.39818 4.43535 4.48815 4.60440 4.66020 4.72292 4.74964 4.80951 4.97478 4.99427 5.09047 5.14369 5.33772 5.38040 5.45694 5.47821 5.74346 5.80646 6.29802 6.65430 6.89592 7.25612 8.87328 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.007887 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.397120 B = 3549.197026 C = 4094.648873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.105 3.895 3 N -0.999 5.999 4 C 0.243 3.757 5 C -0.543 4.543 6 H 0.021 0.979 7 C 0.004 3.996 8 N -0.950 5.950 9 Si 0.948 3.052 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.227 1.227 13 S 2.807 3.193 14 O -1.001 7.001 15 O -1.016 7.016 16 N -1.045 6.045 17 C 0.116 3.884 18 C -0.116 4.116 19 C 0.138 3.862 20 H 0.131 0.869 21 C 0.048 3.952 22 O -0.582 6.582 23 H 0.087 0.913 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.268 0.732 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.033 0.967 36 H 0.095 0.905 37 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.357 6.521 10.720 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.020 4.020 3 N -0.838 5.838 4 C 0.118 3.882 5 C -0.583 4.583 6 H 0.039 0.961 7 C -0.193 4.193 8 N -0.591 5.591 9 Si 0.769 3.231 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.149 1.149 13 S 2.819 3.181 14 O -0.986 6.986 15 O -1.001 7.001 16 N -0.889 5.889 17 C -0.009 4.009 18 C -0.156 4.156 19 C 0.033 3.967 20 H 0.148 0.852 21 C -0.030 4.030 22 O -0.390 6.390 23 H 0.106 0.894 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.051 0.949 36 H 0.112 0.888 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -17.608 5.807 11.011 21.564 hybrid contribution 1.056 0.504 -1.089 1.598 sum -16.552 6.311 9.922 20.304 Atomic orbital electron populations 1.22158 0.93382 1.03531 1.02610 1.21382 0.96241 0.81518 1.02875 1.57687 1.81684 1.22665 1.21778 1.19089 0.95542 0.91229 0.82357 1.21701 1.02461 1.27959 1.06141 0.96070 1.26015 0.97204 0.98296 0.97828 1.70092 1.23212 1.45955 1.19796 0.85730 0.80781 0.79029 0.77585 1.19051 1.20465 1.14920 1.00861 0.73241 0.71905 0.72092 1.93534 1.56149 1.63919 1.84949 1.93458 1.86255 1.58591 1.61796 1.60694 1.35985 1.22657 1.69516 1.22783 0.84498 0.98936 0.94649 1.23318 1.01368 0.94456 0.96448 1.22772 0.93975 0.78595 1.01352 0.85191 1.22568 0.95798 0.99953 0.84690 1.86378 1.60404 1.60495 1.31692 0.89448 0.91990 0.91850 0.91077 0.90902 0.92773 0.95200 0.92347 0.87187 0.90863 0.89057 0.85889 0.94856 0.88751 0.75871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 10.24 71.98 0.74 -3.21 16 2 C 0.11 3.76 6.37 86.38 0.55 4.31 16 3 N -1.00 -42.07 2.82 -519.86 -1.47 -43.53 16 4 C 0.24 11.35 4.16 85.63 0.36 11.71 16 5 C -0.54 -32.43 9.94 25.60 0.25 -32.17 16 6 H 0.02 1.44 8.06 -2.91 -0.02 1.42 16 7 C 0.00 0.23 5.47 84.65 0.46 0.70 16 8 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 9 Si 0.95 42.46 27.47 68.60 1.88 44.35 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.23 -8.70 6.54 99.48 0.65 -8.04 16 13 S 2.81 119.42 6.61 -56.49 -0.37 119.05 16 14 O -1.00 -51.01 15.28 -128.00 -1.96 -52.96 16 15 O -1.02 -46.71 16.60 -128.00 -2.12 -48.83 16 16 N -1.05 -31.28 4.13 -526.84 -2.18 -33.45 16 17 C 0.12 2.28 8.40 83.18 0.70 2.98 16 18 C -0.12 -1.90 7.85 30.93 0.24 -1.65 16 19 C 0.14 3.10 4.64 41.80 0.19 3.29 16 20 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 21 C 0.05 1.22 6.86 71.98 0.49 1.71 16 22 O -0.58 -15.13 12.14 -148.98 -1.81 -16.93 16 23 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.06 1.37 7.41 -2.39 -0.02 1.35 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 2.69 8.11 -2.39 -0.02 2.67 16 27 H 0.07 2.63 6.88 -2.38 -0.02 2.61 16 28 H 0.05 2.29 7.17 -2.38 -0.02 2.28 16 29 H 0.03 1.36 7.19 -2.39 -0.02 1.34 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.11 1.48 7.75 -2.39 -0.02 1.47 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.81 6.94 -2.39 -0.02 1.79 16 34 H 0.12 1.02 8.14 -2.38 -0.02 1.01 16 35 H 0.03 1.12 6.62 -2.38 -0.02 1.11 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.39 7.14 9.12 -74.06 -0.68 6.46 16 Total: -1.00 -85.37 316.08 -3.39 -88.76 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.34 Total: 16.68 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 3.99 Total: -12.34 kcal Atomic # 7 Polarization: -134.42 SS G_CDS: -3.35 Total: -137.77 kcal Atomic # 8 Polarization: -112.84 SS G_CDS: -5.89 Total: -118.73 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.35 kcal Atomic # 16 Polarization: 119.42 SS G_CDS: -0.37 Total: 119.05 kcal Total: -85.37 -3.39 -88.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907830435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.990 kcal (2) G-P(sol) polarization free energy of solvation -85.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds