Wall clock time and date at job start Tue Mar 31 2020 01:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.46497 * 120.00246 * 60.00246 * 12 2 1 14 14 S 1.65602 * 119.99924 * 239.99594 * 12 2 1 15 15 O 1.42103 * 106.40353 * 203.53900 * 14 12 2 16 16 O 1.42099 * 106.40295 * 336.46296 * 14 12 2 17 17 N 1.65599 * 107.21440 * 90.00431 * 14 12 2 18 18 C 1.47075 * 136.05543 * 269.62591 * 17 14 12 19 19 C 1.53758 * 87.88606 * 152.96569 * 18 17 14 20 20 C 1.47070 * 136.05877 * 89.99978 * 17 14 12 21 21 H 1.09005 * 113.46697 * 92.30608 * 20 17 14 22 22 C 1.52996 * 113.46887 * 321.92033 * 20 17 14 23 23 O 1.42904 * 109.47135 * 295.00140 * 22 20 17 24 24 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 26 26 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 27 27 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47322 * 89.99723 * 13 12 2 29 29 H 1.08998 * 109.47658 * 209.99981 * 13 12 2 30 30 H 1.09003 * 109.46530 * 330.00118 * 13 12 2 31 31 H 1.08994 * 113.46448 * 267.69498 * 18 17 14 32 32 H 1.09000 * 113.46642 * 38.14037 * 18 17 14 33 33 H 1.09000 * 114.39436 * 272.67916 * 19 18 17 34 34 H 1.09000 * 114.26622 * 139.79480 * 19 18 17 35 35 H 1.09005 * 109.47176 * 55.00091 * 22 20 17 36 36 H 1.08992 * 109.47493 * 174.99920 * 22 20 17 37 37 H 0.96700 * 113.99710 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5795 1.1829 1.5748 17 7 1.9608 0.8089 3.3998 18 6 1.2663 2.0977 3.5408 19 6 0.2086 1.3703 4.3872 20 6 1.3692 0.4113 4.6862 21 1 1.9662 0.7080 5.5487 22 6 0.9492 -1.0590 4.7352 23 8 -0.1073 -1.2841 3.7996 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.9026 -0.5282 -4.4376 28 1 2.4158 -2.7377 0.9716 29 1 1.6239 -2.2853 2.5001 30 1 0.6905 -2.3002 0.9846 31 1 1.8361 2.8387 4.1012 32 1 0.8784 2.4869 2.5994 33 1 -0.6016 0.9250 3.8098 34 1 -0.1387 1.9352 5.2523 35 1 1.8012 -1.6891 4.4796 36 1 0.6038 -1.3050 5.7393 37 1 -0.4241 -2.1974 3.7763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907831847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:34 Heat of formation + Delta-G solvation = -70.014474 kcal Electronic energy + Delta-G solvation = -21974.076545 eV Core-core repulsion = 18687.607094 eV Total energy + Delta-G solvation = -3286.469451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.60528 -36.75369 -36.43198 -36.03307 -35.26138 -32.44112 -29.95537 -28.90675 -28.26674 -25.72099 -24.94734 -23.08565 -21.29276 -20.47900 -18.44710 -17.56910 -17.26224 -16.84392 -16.29020 -15.91597 -15.39095 -15.17105 -14.48559 -13.85856 -13.64664 -13.28649 -13.13391 -12.71660 -12.61724 -12.36013 -12.24368 -12.09045 -11.88716 -11.77719 -11.54416 -11.43382 -11.13442 -10.99086 -10.80652 -10.42447 -10.39179 -10.09675 -10.04343 -9.55695 -9.34285 -8.95748 -8.59280 -8.00996 -6.09110 -4.08980 1.06617 3.25115 3.35780 3.38698 3.38950 4.01774 4.08940 4.38270 4.44448 4.61227 4.83776 4.95848 5.21006 5.21369 5.27700 5.45741 5.49416 5.58447 5.66490 5.79958 6.05811 6.12706 6.29327 6.30214 6.34893 6.44369 6.55052 6.64509 6.71478 6.89758 7.37779 7.47689 7.57450 7.70111 8.51511 8.95170 9.51241 11.04007 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.007450 C = 0.007234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.031592 B = 3757.291109 C = 3869.794389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.241 3.759 3 H 0.053 0.947 4 C -0.520 4.520 5 H 0.081 0.919 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.265 1.265 11 H -0.294 1.294 12 N -0.973 5.973 13 C 0.118 3.882 14 S 2.800 3.200 15 O -0.991 6.991 16 O -0.973 6.973 17 N -1.044 6.044 18 C 0.125 3.875 19 C -0.139 4.139 20 C 0.153 3.847 21 H 0.100 0.900 22 C 0.055 3.945 23 O -0.556 6.556 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.045 0.955 27 H 0.265 0.735 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 1.820 18.272 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.137 3.863 3 H 0.070 0.930 4 C -0.560 4.560 5 H 0.099 0.901 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.190 1.190 11 H -0.222 1.222 12 N -0.814 5.814 13 C -0.028 4.028 14 S 2.812 3.188 15 O -0.975 6.975 16 O -0.958 6.958 17 N -0.883 5.883 18 C -0.001 4.001 19 C -0.178 4.178 20 C 0.047 3.953 21 H 0.117 0.883 22 C -0.024 4.024 23 O -0.361 6.361 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.731 2.405 17.780 18.835 hybrid contribution -0.916 0.056 -0.219 0.943 sum -6.647 2.461 17.561 18.938 Atomic orbital electron populations 1.22422 0.98946 1.01372 0.98829 1.19046 0.90531 0.93401 0.83367 0.92966 1.21180 1.32349 1.14179 0.88249 0.90100 1.24905 0.95784 0.96578 0.95694 1.69881 1.45353 1.40224 0.97914 0.86924 0.80456 0.83870 0.77392 1.20409 1.19004 1.22175 1.57344 1.69947 1.19847 1.34264 1.21136 1.01514 0.81505 0.98640 1.01302 0.72833 0.72805 0.71899 1.93521 1.68827 1.60416 1.74742 1.93584 1.73630 1.56367 1.72174 1.60889 1.67209 1.26810 1.33392 1.22358 0.91364 0.86055 1.00342 1.23515 0.97029 0.96990 1.00275 1.22138 0.93059 0.93669 0.86474 0.88286 1.22408 0.90888 0.96449 0.92691 1.86570 1.53784 1.33409 1.62368 0.92281 0.94614 0.93654 0.92512 0.93453 0.93304 0.91019 0.90392 0.90543 0.87360 0.90620 0.92210 0.92277 0.77542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.65 37.16 0.32 -2.98 16 2 C 0.24 5.80 2.21 -69.08 -0.15 5.65 16 3 H 0.05 1.35 5.97 -51.93 -0.31 1.04 16 4 C -0.52 -14.72 8.95 -34.44 -0.31 -15.03 16 5 H 0.08 2.48 7.89 -52.49 -0.41 2.06 16 6 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 8 Si 0.88 21.94 24.37 -169.99 -4.14 17.80 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.16 16 10 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 N -0.97 -20.41 3.12 -115.85 -0.36 -20.77 16 13 C 0.12 2.12 9.18 59.85 0.55 2.67 16 14 S 2.80 57.05 6.53 -107.50 -0.70 56.34 16 15 O -0.99 -20.98 16.54 -57.17 -0.95 -21.92 16 16 O -0.97 -23.48 16.70 -57.17 -0.95 -24.44 16 17 N -1.04 -16.02 4.12 -117.70 -0.48 -16.50 16 18 C 0.12 1.54 8.74 -8.35 -0.07 1.47 16 19 C -0.14 -1.38 7.86 -26.08 -0.20 -1.59 16 20 C 0.15 1.72 4.63 -72.38 -0.34 1.39 16 21 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 22 C 0.05 0.56 6.87 37.16 0.26 0.81 16 23 O -0.56 -5.83 10.72 -35.23 -0.38 -6.21 16 24 H 0.06 1.18 6.66 -51.93 -0.35 0.84 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 1.00 3.27 -51.93 -0.17 0.83 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.72 5.21 -51.93 -0.27 0.45 16 30 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.11 1.22 6.92 -51.93 -0.36 0.86 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.72 6.53 -51.93 -0.34 0.38 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.38 2.56 9.12 45.56 0.42 2.98 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -35.67 302.41 -6.95 -42.62 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.27 Total: 0.79 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.05 Total: -5.60 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.07 Total: -63.94 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -2.28 Total: -52.57 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Atomic # 16 Polarization: 57.05 SS G_CDS: -0.70 Total: 56.34 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.67 -6.95 -42.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907831847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.395 kcal (2) G-P(sol) polarization free energy of solvation -35.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds