Wall clock time and date at job start Tue Mar 31 2020 01:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.46497 * 120.00246 * 60.00246 * 12 2 1 14 14 S 1.65602 * 119.99924 * 239.99594 * 12 2 1 15 15 O 1.42103 * 106.40353 * 203.53900 * 14 12 2 16 16 O 1.42099 * 106.40295 * 336.46296 * 14 12 2 17 17 N 1.65599 * 107.21440 * 90.00431 * 14 12 2 18 18 C 1.47075 * 136.05543 * 269.62591 * 17 14 12 19 19 C 1.53758 * 87.88606 * 152.96569 * 18 17 14 20 20 C 1.47070 * 136.05877 * 89.99978 * 17 14 12 21 21 H 1.09005 * 113.46697 * 92.30608 * 20 17 14 22 22 C 1.52996 * 113.46887 * 321.92033 * 20 17 14 23 23 O 1.42904 * 109.47135 * 295.00140 * 22 20 17 24 24 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 26 26 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 27 27 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47322 * 89.99723 * 13 12 2 29 29 H 1.08998 * 109.47658 * 209.99981 * 13 12 2 30 30 H 1.09003 * 109.46530 * 330.00118 * 13 12 2 31 31 H 1.08994 * 113.46448 * 267.69498 * 18 17 14 32 32 H 1.09000 * 113.46642 * 38.14037 * 18 17 14 33 33 H 1.09000 * 114.39436 * 272.67916 * 19 18 17 34 34 H 1.09000 * 114.26622 * 139.79480 * 19 18 17 35 35 H 1.09005 * 109.47176 * 55.00091 * 22 20 17 36 36 H 1.08992 * 109.47493 * 174.99920 * 22 20 17 37 37 H 0.96700 * 113.99710 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5795 1.1829 1.5748 17 7 1.9608 0.8089 3.3998 18 6 1.2663 2.0977 3.5408 19 6 0.2086 1.3703 4.3872 20 6 1.3692 0.4113 4.6862 21 1 1.9662 0.7080 5.5487 22 6 0.9492 -1.0590 4.7352 23 8 -0.1073 -1.2841 3.7996 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.9026 -0.5282 -4.4376 28 1 2.4158 -2.7377 0.9716 29 1 1.6239 -2.2853 2.5001 30 1 0.6905 -2.3002 0.9846 31 1 1.8361 2.8387 4.1012 32 1 0.8784 2.4869 2.5994 33 1 -0.6016 0.9250 3.8098 34 1 -0.1387 1.9352 5.2523 35 1 1.8012 -1.6891 4.4796 36 1 0.6038 -1.3050 5.7393 37 1 -0.4241 -2.1974 3.7763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907831847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:32 Heat of formation + Delta-G solvation = -101.879552 kcal Electronic energy + Delta-G solvation = -21975.458319 eV Core-core repulsion = 18687.607094 eV Total energy + Delta-G solvation = -3287.851225 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.52242 -38.42062 -38.08132 -36.95862 -36.92511 -34.54225 -31.78141 -29.83201 -29.21927 -27.34173 -26.95455 -23.92805 -22.80413 -21.84422 -19.69842 -19.07711 -18.87447 -18.19005 -17.72400 -17.41854 -16.84861 -16.22909 -15.89617 -15.43834 -15.12014 -14.79605 -14.45889 -14.24755 -14.17461 -13.83798 -13.55166 -13.46202 -13.29377 -13.18475 -13.12271 -12.95785 -12.83407 -12.71869 -12.14303 -12.01615 -11.75017 -11.46953 -11.33537 -11.22824 -10.81593 -10.76570 -10.03783 -9.72020 -8.32054 -6.37081 -0.45970 1.28101 1.37058 1.45627 1.97903 2.30231 2.51514 3.02431 3.14520 3.38314 3.72258 3.84339 4.03725 4.17113 4.42796 4.46760 4.50880 4.59460 4.65325 4.69886 4.72113 4.76286 4.80488 4.92733 5.03231 5.11380 5.12078 5.22265 5.47878 5.51387 5.59915 5.77240 5.89816 6.32594 6.66535 7.01351 7.27486 8.84854 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.007450 C = 0.007234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.031592 B = 3757.291109 C = 3869.794389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.246 3.754 3 H 0.035 0.965 4 C -0.528 4.528 5 H 0.038 0.962 6 C 0.015 3.985 7 N -0.944 5.944 8 Si 0.943 3.057 9 H -0.250 1.250 10 H -0.252 1.252 11 H -0.297 1.297 12 N -0.982 5.982 13 C 0.117 3.883 14 S 2.811 3.189 15 O -1.009 7.009 16 O -1.022 7.022 17 N -1.051 6.051 18 C 0.112 3.888 19 C -0.115 4.115 20 C 0.144 3.856 21 H 0.126 0.874 22 C 0.053 3.947 23 O -0.571 6.571 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.268 0.732 28 H 0.023 0.977 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.037 0.963 36 H 0.096 0.904 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.590 3.118 21.058 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.140 3.860 3 H 0.053 0.947 4 C -0.567 4.567 5 H 0.056 0.944 6 C -0.183 4.183 7 N -0.584 5.584 8 Si 0.769 3.231 9 H -0.175 1.175 10 H -0.176 1.176 11 H -0.225 1.225 12 N -0.823 5.823 13 C -0.028 4.028 14 S 2.823 3.177 15 O -0.993 6.993 16 O -1.006 7.006 17 N -0.895 5.895 18 C -0.013 4.013 19 C -0.154 4.154 20 C 0.039 3.961 21 H 0.143 0.857 22 C -0.026 4.026 23 O -0.379 6.379 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.055 0.945 36 H 0.114 0.886 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.363 3.666 20.588 22.522 hybrid contribution -0.031 -0.406 -0.959 1.042 sum -8.394 3.260 19.630 21.597 Atomic orbital electron populations 1.22254 0.95958 1.02345 0.99977 1.18782 0.92642 0.91967 0.82638 0.94734 1.21465 1.31577 1.13059 0.90608 0.94387 1.25798 0.97383 0.99945 0.95194 1.70036 1.47372 1.42412 0.98615 0.85952 0.79799 0.79826 0.77488 1.17519 1.17603 1.22482 1.57286 1.69973 1.20999 1.34001 1.21252 1.01112 0.79789 1.00639 1.00589 0.72956 0.72074 0.72054 1.93484 1.69902 1.61092 1.74793 1.93512 1.75382 1.57782 1.73906 1.60525 1.66496 1.28445 1.33988 1.22771 0.92251 0.85504 1.00758 1.23390 0.95459 0.95887 1.00687 1.22684 0.93460 0.94920 0.85043 0.85664 1.22463 0.90289 0.95363 0.94498 1.86527 1.53663 1.34964 1.62750 0.91492 0.91386 0.94325 0.92347 0.95808 0.90055 0.90001 0.88075 0.91758 0.88351 0.86680 0.94455 0.88631 0.75792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.85 8.65 71.98 0.62 -5.22 16 2 C 0.25 11.80 2.21 44.25 0.10 11.89 16 3 H 0.03 1.79 5.97 -2.39 -0.01 1.78 16 4 C -0.53 -30.85 8.95 25.60 0.23 -30.62 16 5 H 0.04 2.47 7.89 -2.91 -0.02 2.45 16 6 C 0.01 0.88 5.45 84.66 0.46 1.34 16 7 N -0.94 -59.79 13.96 21.45 0.30 -59.50 16 8 Si 0.94 44.97 24.37 68.60 1.67 46.65 16 9 H -0.25 -10.79 6.87 99.48 0.68 -10.11 16 10 H -0.25 -11.38 6.53 99.48 0.65 -10.73 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 12 N -0.98 -41.31 3.12 -520.44 -1.62 -42.93 16 13 C 0.12 4.21 9.18 127.77 1.17 5.38 16 14 S 2.81 114.47 6.53 -56.49 -0.37 114.10 16 15 O -1.01 -42.89 16.54 -128.00 -2.12 -45.01 16 16 O -1.02 -50.39 16.70 -128.00 -2.14 -52.53 16 17 N -1.05 -29.97 4.12 -526.28 -2.17 -32.13 16 18 C 0.11 2.42 8.74 83.27 0.73 3.15 16 19 C -0.11 -1.74 7.86 31.02 0.24 -1.50 16 20 C 0.14 2.67 4.63 41.80 0.19 2.86 16 21 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 22 C 0.05 0.89 6.87 71.98 0.49 1.38 16 23 O -0.57 -10.00 10.72 -148.98 -1.60 -11.59 16 24 H 0.07 2.54 6.66 -2.39 -0.02 2.52 16 25 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.04 1.59 3.27 -2.39 -0.01 1.58 16 27 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 28 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 2.34 5.21 -2.39 -0.01 2.33 16 30 H 0.08 2.73 6.43 -2.39 -0.02 2.71 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 1.77 6.92 -2.39 -0.02 1.76 16 34 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.04 0.81 6.53 -2.38 -0.02 0.79 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.39 4.04 9.12 -74.06 -0.68 3.37 16 Total: -1.00 -80.95 302.41 -3.46 -84.41 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.34 Total: 9.86 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 4.24 Total: -11.34 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -3.49 Total: -134.56 kcal Atomic # 8 Polarization: -103.28 SS G_CDS: -5.85 Total: -109.13 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.67 Total: 46.65 kcal Atomic # 16 Polarization: 114.47 SS G_CDS: -0.37 Total: 114.10 kcal Total: -80.95 -3.46 -84.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907831847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.469 kcal (2) G-P(sol) polarization free energy of solvation -80.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds