Wall clock time and date at job start Tue Mar 31 2020 01:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.46853 * 2 1 4 4 C 1.50694 * 109.47150 * 119.99760 * 2 1 3 5 5 H 1.08002 * 119.99839 * 120.00022 * 4 2 1 6 6 C 1.37878 * 119.99949 * 299.99892 * 4 2 1 7 7 N 1.31512 * 120.00202 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99879 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47580 * 89.99779 * 8 6 4 10 10 H 1.48497 * 109.47272 * 210.00347 * 8 6 4 11 11 H 1.48505 * 109.47108 * 329.99980 * 8 6 4 12 12 N 1.46501 * 109.46911 * 240.00312 * 2 1 3 13 13 C 1.46499 * 119.99634 * 299.99446 * 12 2 1 14 14 S 1.65591 * 120.00341 * 120.00272 * 12 2 1 15 15 O 1.42102 * 106.40164 * 336.45304 * 14 12 2 16 16 O 1.42104 * 106.40175 * 203.53947 * 14 12 2 17 17 N 1.65595 * 107.22226 * 89.99244 * 14 12 2 18 18 C 1.47066 * 136.05400 * 90.00220 * 17 14 12 19 19 C 1.53503 * 87.98596 * 207.08469 * 18 17 14 20 20 C 1.47060 * 136.06020 * 269.95257 * 17 14 12 21 21 H 1.09001 * 113.46914 * 267.75171 * 20 17 14 22 22 C 1.53002 * 113.46853 * 38.13090 * 20 17 14 23 23 O 1.42903 * 109.46879 * 65.00352 * 22 20 17 24 24 H 1.08999 * 109.46688 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46547 * 300.00090 * 1 2 3 26 26 H 1.08998 * 109.46968 * 60.00208 * 1 2 3 27 27 H 0.97001 * 119.99995 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47488 * 270.00733 * 13 12 2 29 29 H 1.08998 * 109.47308 * 30.00529 * 13 12 2 30 30 H 1.08997 * 109.47122 * 150.00334 * 13 12 2 31 31 H 1.09000 * 113.46827 * 321.86073 * 18 17 14 32 32 H 1.09003 * 113.47151 * 92.30863 * 18 17 14 33 33 H 1.08999 * 114.20584 * 87.51845 * 19 18 17 34 34 H 1.08993 * 114.21026 * 220.34353 * 19 18 17 35 35 H 1.09001 * 109.47317 * 184.99815 * 22 20 17 36 36 H 1.08991 * 109.47210 * 305.00227 * 22 20 17 37 37 H 0.96698 * 113.99464 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9429 0.8298 2.6033 8 14 2.3226 -1.1193 4.0079 9 1 3.6307 -0.5439 4.4119 10 1 1.3446 -0.9488 5.1123 11 1 2.4881 -2.5652 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 16 2.9704 0.1141 -2.2862 15 8 2.6904 1.4972 -2.1193 16 8 2.8227 -0.5646 -3.5259 17 7 4.5437 -0.1042 -1.8180 18 6 5.6039 -1.0857 -2.0930 19 6 6.1987 -0.7473 -0.7190 20 6 5.4960 0.5985 -0.9451 21 1 6.1116 1.3275 -1.4721 22 6 4.8544 1.1711 0.3204 23 8 4.3795 0.1009 1.1397 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7083 1.1610 3.4844 28 1 2.4158 -2.7377 -0.9716 29 1 0.6905 -2.3002 -0.9846 30 1 1.6238 -2.2852 -2.5001 31 1 5.2385 -2.1099 -2.1675 32 1 6.2490 -0.8061 -2.9260 33 1 5.7875 -1.3337 0.1027 34 1 7.2869 -0.6867 -0.7056 35 1 5.5942 1.7506 0.8726 36 1 4.0198 1.8157 0.0449 37 1 3.9593 0.3909 1.9609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907831848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:36 Heat of formation + Delta-G solvation = -74.589323 kcal Electronic energy + Delta-G solvation = -22418.973760 eV Core-core repulsion = 19132.305929 eV Total energy + Delta-G solvation = -3286.667832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.22495 -36.63691 -36.15466 -35.17526 -35.07262 -32.54067 -29.01655 -28.40378 -27.90595 -25.49282 -25.09560 -22.61973 -20.92776 -20.43866 -18.07646 -17.30075 -16.63064 -16.42179 -16.12986 -15.61092 -15.00121 -14.64904 -14.25693 -13.55133 -13.43924 -12.96070 -12.83351 -12.67069 -12.22222 -11.93272 -11.80846 -11.71409 -11.51226 -11.43073 -11.29880 -11.09296 -10.93120 -10.81487 -10.55299 -10.41819 -10.21375 -9.99759 -9.84379 -9.28461 -8.98678 -8.65359 -8.40456 -7.85885 -6.04173 -4.02918 1.26829 3.22113 3.33224 3.36855 3.52995 4.18280 4.36190 4.64789 4.82844 4.99043 5.16801 5.22773 5.36815 5.62252 5.76022 5.79123 5.84171 5.96683 6.10875 6.21379 6.25361 6.40407 6.43314 6.65955 6.70021 6.85462 6.91572 7.03987 7.14533 7.56024 7.72071 7.83810 8.09179 8.32683 8.64835 8.97105 9.51485 11.00795 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.009865 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.552518 B = 2837.710711 C = 3534.889244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.271 3.729 3 H 0.055 0.945 4 C -0.470 4.470 5 H 0.070 0.930 6 C 0.046 3.954 7 N -0.897 5.897 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.276 1.276 12 N -0.982 5.982 13 C 0.102 3.898 14 S 2.804 3.196 15 O -0.982 6.982 16 O -1.001 7.001 17 N -1.039 6.039 18 C 0.127 3.873 19 C -0.139 4.139 20 C 0.158 3.842 21 H 0.091 0.909 22 C 0.054 3.946 23 O -0.536 6.536 24 H 0.032 0.968 25 H 0.094 0.906 26 H 0.010 0.990 27 H 0.261 0.739 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.645 -2.601 -4.201 9.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.168 3.832 3 H 0.073 0.927 4 C -0.511 4.511 5 H 0.088 0.912 6 C -0.154 4.154 7 N -0.537 5.537 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.218 1.218 11 H -0.201 1.201 12 N -0.824 5.824 13 C -0.044 4.044 14 S 2.815 3.185 15 O -0.966 6.966 16 O -0.986 6.986 17 N -0.878 5.878 18 C 0.001 3.999 19 C -0.178 4.178 20 C 0.051 3.949 21 H 0.109 0.891 22 C -0.026 4.026 23 O -0.346 6.346 24 H 0.051 0.949 25 H 0.112 0.888 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.246 -2.307 -5.385 10.115 hybrid contribution 0.112 -0.209 1.660 1.677 sum 8.358 -2.516 -3.725 9.490 Atomic orbital electron populations 1.22101 0.98368 0.99579 1.00759 1.18693 0.91220 0.92645 0.80667 0.92714 1.21370 1.28046 1.12215 0.89435 0.91195 1.24929 0.96290 0.95521 0.98622 1.69890 1.37273 1.23168 1.23415 0.86645 0.78250 0.80328 0.82867 1.20763 1.21764 1.20079 1.57622 1.63667 1.21277 1.39827 1.21212 1.01622 0.82046 0.99547 1.01071 0.71520 0.73195 0.72674 1.93552 1.83666 1.32468 1.86960 1.93507 1.85903 1.76677 1.42473 1.60608 1.25767 1.39388 1.62005 1.22256 0.87499 0.92921 0.97246 1.23471 0.98928 0.97278 0.98095 1.22104 0.88286 0.95287 0.89173 0.89116 1.22199 0.97724 0.90861 0.91780 1.86686 1.79526 1.31785 1.36564 0.94868 0.88784 0.97058 0.92904 0.93895 0.90771 0.92451 0.91137 0.90928 0.87014 0.91078 0.93950 0.92721 0.76590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.95 37.16 0.33 -3.17 16 2 C 0.27 6.42 2.52 -69.08 -0.17 6.24 16 3 H 0.06 1.45 6.41 -51.93 -0.33 1.11 16 4 C -0.47 -11.20 4.94 -34.44 -0.17 -11.37 16 5 H 0.07 1.70 7.39 -52.49 -0.39 1.31 16 6 C 0.05 1.12 4.27 -17.82 -0.08 1.04 16 7 N -0.90 -23.20 11.32 55.43 0.63 -22.58 16 8 Si 0.89 19.35 28.76 -169.99 -4.89 14.46 16 9 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.98 -20.83 3.12 -115.85 -0.36 -21.19 16 13 C 0.10 1.90 9.90 59.85 0.59 2.49 16 14 S 2.80 58.70 6.57 -107.50 -0.71 58.00 16 15 O -0.98 -23.24 16.03 -57.17 -0.92 -24.16 16 16 O -1.00 -22.02 16.74 -57.17 -0.96 -22.98 16 17 N -1.04 -18.07 4.12 -117.90 -0.49 -18.56 16 18 C 0.13 1.72 8.72 -8.51 -0.07 1.65 16 19 C -0.14 -1.79 7.84 -26.21 -0.21 -2.00 16 20 C 0.16 2.39 4.64 -72.40 -0.34 2.06 16 21 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 22 C 0.05 0.92 7.29 37.16 0.27 1.20 16 23 O -0.54 -10.31 8.89 -35.23 -0.31 -10.62 16 24 H 0.03 0.73 6.66 -51.93 -0.35 0.38 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.35 6.43 -51.93 -0.33 1.02 16 30 H 0.06 0.99 7.02 -51.93 -0.36 0.63 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.11 1.67 6.92 -51.93 -0.36 1.31 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 1.10 6.96 -51.93 -0.36 0.74 16 37 H 0.38 7.75 6.20 45.56 0.28 8.04 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -29.34 301.31 -7.91 -37.26 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -4.61 Total: 7.69 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 0.16 Total: -1.86 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.22 Total: -62.33 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -2.19 Total: -57.75 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.89 Total: 14.46 kcal Atomic # 16 Polarization: 58.70 SS G_CDS: -0.71 Total: 58.00 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.34 -7.91 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907831848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.333 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds