Wall clock time and date at job start Tue Mar 31 2020 01:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.46853 * 2 1 4 4 C 1.50694 * 109.47150 * 119.99760 * 2 1 3 5 5 H 1.08002 * 119.99839 * 120.00022 * 4 2 1 6 6 C 1.37878 * 119.99949 * 299.99892 * 4 2 1 7 7 N 1.31512 * 120.00202 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99879 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47580 * 89.99779 * 8 6 4 10 10 H 1.48497 * 109.47272 * 210.00347 * 8 6 4 11 11 H 1.48505 * 109.47108 * 329.99980 * 8 6 4 12 12 N 1.46501 * 109.46911 * 240.00312 * 2 1 3 13 13 C 1.46499 * 119.99634 * 299.99446 * 12 2 1 14 14 S 1.65591 * 120.00341 * 120.00272 * 12 2 1 15 15 O 1.42102 * 106.40164 * 336.45304 * 14 12 2 16 16 O 1.42104 * 106.40175 * 203.53947 * 14 12 2 17 17 N 1.65595 * 107.22226 * 89.99244 * 14 12 2 18 18 C 1.47066 * 136.05400 * 90.00220 * 17 14 12 19 19 C 1.53503 * 87.98596 * 207.08469 * 18 17 14 20 20 C 1.47060 * 136.06020 * 269.95257 * 17 14 12 21 21 H 1.09001 * 113.46914 * 267.75171 * 20 17 14 22 22 C 1.53002 * 113.46853 * 38.13090 * 20 17 14 23 23 O 1.42903 * 109.46879 * 65.00352 * 22 20 17 24 24 H 1.08999 * 109.46688 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46547 * 300.00090 * 1 2 3 26 26 H 1.08998 * 109.46968 * 60.00208 * 1 2 3 27 27 H 0.97001 * 119.99995 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47488 * 270.00733 * 13 12 2 29 29 H 1.08998 * 109.47308 * 30.00529 * 13 12 2 30 30 H 1.08997 * 109.47122 * 150.00334 * 13 12 2 31 31 H 1.09000 * 113.46827 * 321.86073 * 18 17 14 32 32 H 1.09003 * 113.47151 * 92.30863 * 18 17 14 33 33 H 1.08999 * 114.20584 * 87.51845 * 19 18 17 34 34 H 1.08993 * 114.21026 * 220.34353 * 19 18 17 35 35 H 1.09001 * 109.47317 * 184.99815 * 22 20 17 36 36 H 1.08991 * 109.47210 * 305.00227 * 22 20 17 37 37 H 0.96698 * 113.99464 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9429 0.8298 2.6033 8 14 2.3226 -1.1193 4.0079 9 1 3.6307 -0.5439 4.4119 10 1 1.3446 -0.9488 5.1123 11 1 2.4881 -2.5652 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 16 2.9704 0.1141 -2.2862 15 8 2.6904 1.4972 -2.1193 16 8 2.8227 -0.5646 -3.5259 17 7 4.5437 -0.1042 -1.8180 18 6 5.6039 -1.0857 -2.0930 19 6 6.1987 -0.7473 -0.7190 20 6 5.4960 0.5985 -0.9451 21 1 6.1116 1.3275 -1.4721 22 6 4.8544 1.1711 0.3204 23 8 4.3795 0.1009 1.1397 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7083 1.1610 3.4844 28 1 2.4158 -2.7377 -0.9716 29 1 0.6905 -2.3002 -0.9846 30 1 1.6238 -2.2852 -2.5001 31 1 5.2385 -2.1099 -2.1675 32 1 6.2490 -0.8061 -2.9260 33 1 5.7875 -1.3337 0.1027 34 1 7.2869 -0.6867 -0.7056 35 1 5.5942 1.7506 0.8726 36 1 4.0198 1.8157 0.0449 37 1 3.9593 0.3909 1.9609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907831848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:36 Heat of formation + Delta-G solvation = -97.841466 kcal Electronic energy + Delta-G solvation = -22419.982049 eV Core-core repulsion = 19132.305929 eV Total energy + Delta-G solvation = -3287.676120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42962 -38.34778 -37.88899 -36.89896 -36.53944 -34.37701 -30.84229 -29.72031 -29.12713 -27.23331 -26.88504 -23.81092 -22.57054 -21.88031 -19.55665 -18.86772 -18.25876 -18.19992 -17.56796 -17.25439 -16.52831 -16.03894 -15.81053 -15.17912 -14.99811 -14.60958 -14.43149 -14.12049 -13.62905 -13.45321 -13.39707 -13.22780 -13.19242 -13.08705 -12.83103 -12.75221 -12.60458 -12.54292 -12.20460 -12.07801 -11.80010 -11.66571 -11.15397 -11.03968 -10.58499 -10.25191 -9.93536 -9.56266 -7.93785 -5.97110 -0.31877 1.50117 1.56242 1.63594 2.02754 2.53634 2.60291 3.24067 3.32120 3.52979 3.81364 3.95062 4.18092 4.28695 4.53048 4.58990 4.71301 4.72549 4.77892 4.78613 4.86912 4.97585 5.03972 5.11361 5.14523 5.20183 5.24398 5.54029 5.70998 5.82268 5.86117 5.97373 6.19626 6.43091 7.03383 7.11189 7.60168 9.11250 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.009865 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.552518 B = 2837.710711 C = 3534.889244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.279 3.721 3 H 0.022 0.978 4 C -0.459 4.459 5 H 0.068 0.932 6 C 0.013 3.987 7 N -0.927 5.927 8 Si 0.948 3.052 9 H -0.269 1.269 10 H -0.302 1.302 11 H -0.277 1.277 12 N -0.991 5.991 13 C 0.100 3.900 14 S 2.813 3.187 15 O -1.018 7.018 16 O -1.016 7.016 17 N -1.050 6.050 18 C 0.123 3.877 19 C -0.119 4.119 20 C 0.150 3.850 21 H 0.123 0.877 22 C 0.049 3.951 23 O -0.544 6.544 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.017 0.983 37 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.961 -3.863 -4.320 12.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.175 3.825 3 H 0.040 0.960 4 C -0.499 4.499 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.569 5.569 8 Si 0.776 3.224 9 H -0.194 1.194 10 H -0.229 1.229 11 H -0.202 1.202 12 N -0.832 5.832 13 C -0.046 4.046 14 S 2.826 3.174 15 O -1.003 7.003 16 O -1.000 7.000 17 N -0.893 5.893 18 C -0.002 4.002 19 C -0.158 4.158 20 C 0.045 3.955 21 H 0.141 0.859 22 C -0.031 4.031 23 O -0.352 6.352 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 10.574 -3.591 -5.531 12.461 hybrid contribution -0.541 0.197 1.647 1.745 sum 10.033 -3.394 -3.884 11.281 Atomic orbital electron populations 1.22023 0.98646 0.99935 0.99816 1.18381 0.90972 0.91366 0.81762 0.95994 1.21327 1.27465 1.11651 0.89478 0.91430 1.25433 0.96350 0.95844 1.00775 1.70021 1.38609 1.24570 1.23675 0.85735 0.77908 0.79154 0.79613 1.19411 1.22941 1.20179 1.57547 1.64604 1.22202 1.38838 1.21349 1.02014 0.80755 1.00467 1.00468 0.72357 0.72232 0.72342 1.93499 1.84754 1.34700 1.87340 1.93477 1.86622 1.76711 1.43193 1.60417 1.25255 1.41162 1.62468 1.22636 0.86319 0.92421 0.98778 1.23336 1.00994 0.94710 0.96802 1.22535 0.87863 0.97189 0.87948 0.85949 1.22355 0.97227 0.90441 0.93047 1.86655 1.79584 1.32613 1.36309 0.93757 0.90823 0.96909 0.93206 0.92731 0.90706 0.91283 0.90787 0.87868 0.89082 0.86889 0.90954 0.96514 0.77544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.95 8.95 71.99 0.64 -6.30 16 2 C 0.28 13.46 2.52 44.25 0.11 13.57 16 3 H 0.02 1.22 6.41 -2.39 -0.02 1.21 16 4 C -0.46 -21.86 4.94 25.60 0.13 -21.74 16 5 H 0.07 3.23 7.39 -2.91 -0.02 3.21 16 6 C 0.01 0.64 4.27 84.66 0.36 1.00 16 7 N -0.93 -48.84 11.32 21.45 0.24 -48.60 16 8 Si 0.95 39.51 28.76 68.60 1.97 41.49 16 9 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 10 H -0.30 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 12 N -0.99 -41.96 3.12 -520.44 -1.62 -43.58 16 13 C 0.10 3.60 9.90 127.77 1.26 4.86 16 14 S 2.81 117.22 6.57 -56.49 -0.37 116.85 16 15 O -1.02 -49.34 16.03 -128.00 -2.05 -51.39 16 16 O -1.02 -43.88 16.74 -128.00 -2.14 -46.03 16 17 N -1.05 -34.65 4.12 -526.93 -2.17 -36.82 16 18 C 0.12 2.90 8.72 83.18 0.73 3.62 16 19 C -0.12 -2.61 7.84 30.93 0.24 -2.37 16 20 C 0.15 4.15 4.64 41.79 0.19 4.35 16 21 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 22 C 0.05 1.62 7.29 71.98 0.52 2.15 16 23 O -0.54 -20.50 8.89 -148.98 -1.32 -21.83 16 24 H 0.04 1.97 6.66 -2.39 -0.02 1.95 16 25 H 0.07 3.86 6.07 -2.38 -0.01 3.84 16 26 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 2.65 6.43 -2.39 -0.02 2.64 16 30 H 0.07 2.31 7.02 -2.39 -0.02 2.29 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 2.45 6.92 -2.39 -0.02 2.43 16 34 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.02 0.69 6.96 -2.39 -0.02 0.67 16 37 H 0.37 15.15 6.20 -74.06 -0.46 14.69 16 Total: -1.00 -63.85 301.31 -2.65 -66.50 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.62 Total: 24.27 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 4.19 Total: -0.86 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -3.55 Total: -129.00 kcal Atomic # 8 Polarization: -113.73 SS G_CDS: -5.52 Total: -119.25 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.97 Total: 41.49 kcal Atomic # 16 Polarization: 117.22 SS G_CDS: -0.37 Total: 116.85 kcal Total: -63.85 -2.65 -66.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907831848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.337 kcal (2) G-P(sol) polarization free energy of solvation -63.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds