Wall clock time and date at job start Tue Mar 31 2020 01:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 S 1.65603 * 120.00110 * 119.99604 * 12 2 1 15 15 O 1.42103 * 106.39984 * 203.54254 * 14 12 2 16 16 O 1.42101 * 106.40348 * 336.46504 * 14 12 2 17 17 N 1.65604 * 107.21689 * 90.00259 * 14 12 2 18 18 C 1.47059 * 136.05500 * 89.99605 * 17 14 12 19 19 C 1.53504 * 87.98366 * 152.84564 * 18 17 14 20 20 C 1.47064 * 136.05631 * 269.63025 * 17 14 12 21 21 H 1.09002 * 113.46697 * 92.37351 * 20 17 14 22 22 C 1.52998 * 113.47017 * 321.93598 * 20 17 14 23 23 O 1.42906 * 109.47110 * 295.00298 * 22 20 17 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 29 29 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 30 30 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 31 31 H 1.08997 * 113.47163 * 267.62112 * 18 17 14 32 32 H 1.09001 * 113.47166 * 38.01126 * 18 17 14 33 33 H 1.09005 * 114.20469 * 139.65161 * 19 18 17 34 34 H 1.08996 * 114.20614 * 272.28474 * 19 18 17 35 35 H 1.09002 * 109.47340 * 55.00102 * 22 20 17 36 36 H 1.09000 * 109.47507 * 175.00106 * 22 20 17 37 37 H 0.96693 * 114.00218 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 2.8227 -0.5644 -3.5260 16 8 2.6904 1.4974 -2.1193 17 7 4.5438 -0.1041 -1.8181 18 6 5.6038 -1.0856 -2.0931 19 6 6.6281 0.0211 -1.8059 20 6 5.4978 0.6017 -0.9495 21 1 5.5007 0.2377 0.0779 22 6 5.3903 2.1254 -1.0378 23 8 5.7566 2.5534 -2.3511 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 0.7376 -2.1442 -1.9994 29 1 2.4629 -2.5818 -1.9864 30 1 1.5295 -2.5968 -0.4710 31 1 5.6354 -1.9035 -1.3734 32 1 5.6167 -1.4327 -3.1263 33 1 7.4970 -0.3107 -1.2375 34 1 6.8869 0.6268 -2.6744 35 1 4.3647 2.4300 -0.8293 36 1 6.0599 2.5799 -0.3076 37 1 5.7112 3.5107 -2.4798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907831849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:39 Heat of formation + Delta-G solvation = -83.805720 kcal Electronic energy + Delta-G solvation = -21713.656360 eV Core-core repulsion = 18426.588875 eV Total energy + Delta-G solvation = -3287.067485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.37504 -36.60813 -36.10384 -35.86677 -35.12696 -32.61141 -29.09156 -28.62669 -28.05888 -25.46605 -25.19755 -22.84130 -20.98871 -20.58447 -18.18990 -17.40011 -16.81023 -16.55238 -16.39793 -15.63656 -15.23494 -14.91550 -14.40786 -13.63877 -13.49375 -13.07830 -12.99411 -12.66604 -12.40597 -12.09581 -11.95433 -11.74830 -11.66150 -11.44857 -11.35132 -11.20827 -10.97089 -10.89915 -10.67658 -10.44857 -10.22970 -10.16543 -10.07922 -9.65720 -9.33811 -8.71422 -8.51364 -7.92821 -6.12492 -4.21236 1.25989 3.21551 3.28124 3.28680 3.48212 4.19591 4.31925 4.42504 4.64633 4.83427 5.07832 5.17508 5.22281 5.51779 5.55378 5.68074 5.74079 5.79738 5.94308 6.07799 6.19065 6.28544 6.35382 6.49600 6.68016 6.83594 6.89312 6.95021 7.11338 7.50525 7.60789 7.76354 7.84885 8.03406 8.24232 8.81798 9.44921 10.92347 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.007977 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.562202 B = 3509.384289 C = 4032.545725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.057 0.943 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.995 5.995 13 C 0.108 3.892 14 S 2.802 3.198 15 O -0.996 6.996 16 O -0.974 6.974 17 N -1.035 6.035 18 C 0.124 3.876 19 C -0.142 4.142 20 C 0.158 3.842 21 H 0.107 0.893 22 C 0.057 3.943 23 O -0.567 6.567 24 H 0.092 0.908 25 H 0.032 0.968 26 H 0.012 0.988 27 H 0.264 0.736 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.493 -1.320 -5.132 10.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.074 0.926 4 C -0.565 4.565 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.837 5.837 13 C -0.039 4.039 14 S 2.814 3.186 15 O -0.981 6.981 16 O -0.958 6.958 17 N -0.873 5.873 18 C -0.002 4.002 19 C -0.181 4.181 20 C 0.051 3.949 21 H 0.124 0.876 22 C -0.021 4.021 23 O -0.373 6.373 24 H 0.111 0.889 25 H 0.051 0.949 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.922 -1.322 -5.903 10.779 hybrid contribution 0.089 -0.187 1.505 1.519 sum 9.011 -1.509 -4.398 10.140 Atomic orbital electron populations 1.22054 0.98043 0.99639 1.00698 1.18684 0.91828 0.92614 0.80322 0.92581 1.21345 1.31903 1.13083 0.90203 0.92061 1.24929 0.94972 0.94984 0.98944 1.69872 1.36145 1.22567 1.23897 0.86598 0.79106 0.79726 0.82146 1.20271 1.21243 1.20287 1.57909 1.64393 1.21379 1.39981 1.21147 0.98836 0.82230 1.01664 1.01259 0.71108 0.73319 0.72916 1.93517 1.85711 1.76611 1.42213 1.93537 1.83426 1.32068 1.86786 1.60737 1.26976 1.38179 1.61434 1.22318 0.84436 0.92289 1.01170 1.23381 0.95737 0.97652 1.01334 1.22132 0.86398 0.90938 0.95385 0.87557 1.22456 1.00980 0.94540 0.84143 1.86401 1.91291 1.27675 1.31896 0.88939 0.94906 0.96933 0.92582 0.93997 0.93402 0.90316 0.90420 0.90799 0.90418 0.87869 0.90847 0.92641 0.77743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.97 37.16 0.33 -3.18 16 2 C 0.27 6.63 2.62 -69.08 -0.18 6.45 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.53 -13.40 7.99 -34.44 -0.28 -13.67 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.14 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.07 11.32 55.43 0.63 -23.44 16 8 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.99 -21.57 3.12 -115.86 -0.36 -21.93 16 13 C 0.11 2.03 9.28 59.85 0.56 2.59 16 14 S 2.80 59.33 6.64 -107.50 -0.71 58.62 16 15 O -1.00 -22.37 17.21 -57.17 -0.98 -23.35 16 16 O -0.97 -22.88 14.66 -57.17 -0.84 -23.72 16 17 N -1.03 -18.19 4.14 -118.06 -0.49 -18.68 16 18 C 0.12 1.69 8.73 -8.51 -0.07 1.62 16 19 C -0.14 -1.73 7.83 -26.35 -0.21 -1.94 16 20 C 0.16 2.40 4.64 -72.54 -0.34 2.06 16 21 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 22 C 0.06 0.87 6.84 37.16 0.25 1.12 16 23 O -0.57 -8.19 12.10 -35.23 -0.43 -8.61 16 24 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 25 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 30 H 0.08 1.48 7.02 -51.93 -0.36 1.12 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.33 6.90 -51.93 -0.36 0.98 16 35 H 0.07 1.33 6.65 -51.93 -0.35 0.99 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.38 3.87 9.12 45.56 0.42 4.28 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -32.17 313.03 -8.12 -40.29 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.61 Total: 4.46 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -0.02 Total: -3.37 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.22 Total: -64.06 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -2.25 Total: -55.68 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 59.33 SS G_CDS: -0.71 Total: 58.62 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.17 -8.12 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907831849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.515 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds