Wall clock time and date at job start Tue Mar 31 2020 01:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 S 1.65603 * 120.00110 * 119.99604 * 12 2 1 15 15 O 1.42103 * 106.39984 * 203.54254 * 14 12 2 16 16 O 1.42101 * 106.40348 * 336.46504 * 14 12 2 17 17 N 1.65604 * 107.21689 * 90.00259 * 14 12 2 18 18 C 1.47059 * 136.05500 * 89.99605 * 17 14 12 19 19 C 1.53504 * 87.98366 * 152.84564 * 18 17 14 20 20 C 1.47064 * 136.05631 * 269.63025 * 17 14 12 21 21 H 1.09002 * 113.46697 * 92.37351 * 20 17 14 22 22 C 1.52998 * 113.47017 * 321.93598 * 20 17 14 23 23 O 1.42906 * 109.47110 * 295.00298 * 22 20 17 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 29 29 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 30 30 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 31 31 H 1.08997 * 113.47163 * 267.62112 * 18 17 14 32 32 H 1.09001 * 113.47166 * 38.01126 * 18 17 14 33 33 H 1.09005 * 114.20469 * 139.65161 * 19 18 17 34 34 H 1.08996 * 114.20614 * 272.28474 * 19 18 17 35 35 H 1.09002 * 109.47340 * 55.00102 * 22 20 17 36 36 H 1.09000 * 109.47507 * 175.00106 * 22 20 17 37 37 H 0.96693 * 114.00218 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 2.8227 -0.5644 -3.5260 16 8 2.6904 1.4974 -2.1193 17 7 4.5438 -0.1041 -1.8181 18 6 5.6038 -1.0856 -2.0931 19 6 6.6281 0.0211 -1.8059 20 6 5.4978 0.6017 -0.9495 21 1 5.5007 0.2377 0.0779 22 6 5.3903 2.1254 -1.0378 23 8 5.7566 2.5534 -2.3511 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 0.7376 -2.1442 -1.9994 29 1 2.4629 -2.5818 -1.9864 30 1 1.5295 -2.5968 -0.4710 31 1 5.6354 -1.9035 -1.3734 32 1 5.6167 -1.4327 -3.1263 33 1 7.4970 -0.3107 -1.2375 34 1 6.8869 0.6268 -2.6744 35 1 4.3647 2.4300 -0.8293 36 1 6.0599 2.5799 -0.3076 37 1 5.7112 3.5107 -2.4798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907831849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:38 Heat of formation + Delta-G solvation = -109.983511 kcal Electronic energy + Delta-G solvation = -21714.791514 eV Core-core repulsion = 18426.588875 eV Total energy + Delta-G solvation = -3288.202639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.53382 -38.32444 -37.88813 -37.04551 -36.83554 -34.51616 -30.95835 -29.85618 -29.22296 -27.27338 -27.01680 -23.95346 -22.65222 -22.02258 -19.64952 -18.79991 -18.51047 -18.28226 -17.79426 -17.26224 -16.66309 -16.27927 -15.92927 -15.23970 -15.04761 -14.73372 -14.36581 -14.27765 -13.73949 -13.57934 -13.44080 -13.23489 -13.21429 -13.15441 -13.00477 -12.78163 -12.75644 -12.68195 -12.23913 -12.15577 -11.97033 -11.76300 -11.26700 -11.21982 -10.84535 -10.49932 -10.04191 -9.63700 -8.09186 -6.24928 -0.33976 1.46921 1.48150 1.55607 1.97505 2.45300 2.61669 3.18698 3.21281 3.36357 3.69505 3.87912 4.07472 4.17888 4.43905 4.49730 4.63977 4.67857 4.71076 4.74011 4.77943 4.92445 4.95302 5.04965 5.08066 5.14685 5.20695 5.44919 5.58716 5.70030 5.74079 5.84562 6.09125 6.27636 6.83699 6.89651 7.44839 8.95288 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.007977 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.562202 B = 3509.384289 C = 4032.545725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.275 3.725 3 H 0.022 0.978 4 C -0.530 4.530 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.961 3.039 9 H -0.266 1.266 10 H -0.290 1.290 11 H -0.272 1.272 12 N -1.003 6.003 13 C 0.102 3.898 14 S 2.810 3.190 15 O -1.013 7.013 16 O -1.007 7.007 17 N -1.045 6.045 18 C 0.117 3.883 19 C -0.116 4.116 20 C 0.143 3.857 21 H 0.113 0.887 22 C 0.057 3.943 23 O -0.578 6.578 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.015 0.985 27 H 0.264 0.736 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.033 0.967 36 H 0.087 0.913 37 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.630 -2.857 -4.675 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.171 3.829 3 H 0.040 0.960 4 C -0.569 4.569 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.216 1.216 11 H -0.197 1.197 12 N -0.844 5.844 13 C -0.043 4.043 14 S 2.823 3.177 15 O -0.998 6.998 16 O -0.992 6.992 17 N -0.887 5.887 18 C -0.007 4.007 19 C -0.156 4.156 20 C 0.037 3.963 21 H 0.130 0.870 22 C -0.022 4.022 23 O -0.385 6.385 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 11.057 -2.868 -5.473 12.666 hybrid contribution -0.525 0.322 1.310 1.448 sum 10.532 -2.545 -4.163 11.608 Atomic orbital electron populations 1.21958 0.98177 0.99944 0.99817 1.18364 0.91720 0.91300 0.81523 0.95992 1.21546 1.31744 1.13086 0.90514 0.91377 1.25708 0.95120 0.95571 1.01854 1.70016 1.37309 1.23982 1.24416 0.85576 0.79030 0.78520 0.78261 1.19055 1.21595 1.19720 1.57844 1.65327 1.22370 1.38824 1.21321 1.00088 0.80838 1.02092 1.00742 0.71884 0.72446 0.72632 1.93482 1.86478 1.76712 1.43095 1.93491 1.84469 1.34074 1.87121 1.60584 1.26005 1.40104 1.62032 1.22697 0.83008 0.92770 1.02242 1.23278 0.95662 0.96048 1.00615 1.22508 0.86871 0.90894 0.95987 0.86951 1.22426 0.99453 0.95102 0.85198 1.86355 1.91023 1.29415 1.31724 0.91011 0.93870 0.96611 0.92714 0.93367 0.91166 0.90337 0.88247 0.90338 0.86486 0.88474 0.94878 0.89515 0.75907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.88 8.97 71.98 0.65 -6.23 16 2 C 0.28 13.79 2.62 44.24 0.12 13.91 16 3 H 0.02 1.26 6.91 -2.39 -0.02 1.24 16 4 C -0.53 -26.78 7.99 25.60 0.20 -26.58 16 5 H 0.07 3.29 7.33 -2.91 -0.02 3.26 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -50.54 11.32 21.45 0.24 -50.30 16 8 Si 0.96 40.37 29.54 68.60 2.03 42.40 16 9 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 12 N -1.00 -43.39 3.12 -520.46 -1.62 -45.01 16 13 C 0.10 3.73 9.28 127.77 1.19 4.92 16 14 S 2.81 119.45 6.64 -56.49 -0.37 119.08 16 15 O -1.01 -45.14 17.21 -128.00 -2.20 -47.35 16 16 O -1.01 -48.95 14.66 -128.00 -1.88 -50.83 16 17 N -1.05 -35.48 4.14 -527.44 -2.18 -37.66 16 18 C 0.12 2.87 8.73 83.18 0.73 3.59 16 19 C -0.12 -2.44 7.83 30.84 0.24 -2.20 16 20 C 0.14 4.09 4.64 41.70 0.19 4.28 16 21 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 22 C 0.06 1.67 6.84 71.98 0.49 2.17 16 23 O -0.58 -16.10 12.10 -148.98 -1.80 -17.90 16 24 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 25 H 0.04 1.97 7.67 -2.39 -0.02 1.95 16 26 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 2.21 7.79 -2.39 -0.02 2.19 16 30 H 0.08 2.84 7.02 -2.39 -0.02 2.83 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.10 2.22 6.90 -2.39 -0.02 2.20 16 35 H 0.03 1.24 6.65 -2.39 -0.02 1.23 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.39 7.79 9.12 -74.06 -0.68 7.11 16 Total: -1.00 -69.48 313.03 -3.14 -72.62 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.40 Total: 19.75 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 4.25 Total: -4.81 kcal Atomic # 7 Polarization: -129.40 SS G_CDS: -3.56 Total: -132.97 kcal Atomic # 8 Polarization: -110.19 SS G_CDS: -5.88 Total: -116.07 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Atomic # 16 Polarization: 119.45 SS G_CDS: -0.37 Total: 119.08 kcal Total: -69.48 -3.14 -72.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907831849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.360 kcal (2) G-P(sol) polarization free energy of solvation -69.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds