Wall clock time and date at job start Tue Mar 31 2020 01:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42100 * 106.40635 * 203.54125 * 14 12 2 16 16 O 1.42101 * 106.39740 * 336.46506 * 14 12 2 17 17 N 1.65609 * 107.21523 * 89.99672 * 14 12 2 18 18 C 1.47064 * 136.05965 * 269.63329 * 17 14 12 19 19 C 1.53238 * 88.08191 * 207.20566 * 18 17 14 20 20 C 1.47065 * 136.05350 * 90.00528 * 17 14 12 21 21 H 1.09004 * 113.46793 * 267.68157 * 20 17 14 22 22 C 1.53003 * 113.46588 * 38.06099 * 20 17 14 23 23 O 1.42896 * 109.47096 * 65.00227 * 22 20 17 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 29 29 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 30 30 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 31 31 H 1.09001 * 113.46879 * 321.93860 * 18 17 14 32 32 H 1.08998 * 113.46837 * 92.37937 * 18 17 14 33 33 H 1.08997 * 114.32571 * 220.47059 * 19 18 17 34 34 H 1.09003 * 114.01770 * 87.71484 * 19 18 17 35 35 H 1.09007 * 109.46866 * 184.99691 * 22 20 17 36 36 H 1.08993 * 109.47291 * 304.99673 * 22 20 17 37 37 H 0.96702 * 114.00290 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9606 0.8092 3.3998 18 6 1.2661 2.0978 3.5407 19 6 1.3148 1.8996 5.0594 20 6 1.3690 0.4116 4.6862 21 1 0.3856 -0.0483 4.5881 22 6 2.3179 -0.4034 5.5673 23 8 3.4293 0.4094 5.9494 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 2.4157 -2.7377 0.9718 29 1 1.6238 -2.2851 2.5002 30 1 0.6904 -2.3002 0.9847 31 1 1.8548 2.9481 3.1963 32 1 0.2547 2.0925 3.1345 33 1 0.4048 2.1968 5.5804 34 1 2.2245 2.2764 5.5271 35 1 1.7883 -0.7374 6.4596 36 1 2.6756 -1.2700 5.0113 37 1 4.0732 -0.0435 6.5109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907831850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:40 Heat of formation + Delta-G solvation = -110.056883 kcal Electronic energy + Delta-G solvation = -21493.142071 eV Core-core repulsion = 18204.936251 eV Total energy + Delta-G solvation = -3288.205820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55149 -38.31906 -37.90216 -37.02853 -36.82643 -34.55653 -30.94350 -29.84955 -29.27262 -27.32476 -27.01078 -23.93985 -22.65330 -21.97909 -19.65465 -18.87924 -18.56274 -18.23930 -17.76858 -17.29143 -16.64708 -16.31589 -15.91077 -15.26605 -15.09281 -14.61896 -14.53815 -14.28364 -13.75020 -13.59221 -13.42473 -13.21525 -13.17879 -13.14891 -13.02011 -12.83482 -12.77506 -12.62080 -12.26788 -12.20224 -11.98450 -11.73739 -11.27023 -11.17532 -10.80499 -10.54803 -10.06181 -9.65777 -8.15044 -6.29230 -0.37495 1.38678 1.41325 1.52281 2.01445 2.40314 2.62265 3.12662 3.20872 3.37405 3.71116 3.87191 4.06536 4.17460 4.44535 4.49159 4.60914 4.65514 4.70238 4.74276 4.80780 4.94445 4.98819 5.05313 5.07630 5.10501 5.17983 5.42645 5.58105 5.71269 5.76325 5.85847 6.11652 6.27206 6.78375 6.95654 7.39908 8.89417 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032520 B = 0.005856 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.807860 B = 4780.638192 C = 5021.007614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H 0.018 0.982 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.271 1.271 11 H -0.283 1.283 12 N -1.002 6.002 13 C 0.107 3.893 14 S 2.809 3.191 15 O -0.999 6.999 16 O -1.024 7.024 17 N -1.046 6.046 18 C 0.112 3.888 19 C -0.116 4.116 20 C 0.142 3.858 21 H 0.133 0.867 22 C 0.055 3.945 23 O -0.585 6.585 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.265 0.735 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.539 -1.969 17.756 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.035 0.965 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.783 3.217 9 H -0.196 1.196 10 H -0.196 1.196 11 H -0.209 1.209 12 N -0.843 5.843 13 C -0.038 4.038 14 S 2.822 3.178 15 O -0.984 6.984 16 O -1.008 7.008 17 N -0.889 5.889 18 C -0.014 4.014 19 C -0.156 4.156 20 C 0.037 3.963 21 H 0.150 0.850 22 C -0.024 4.024 23 O -0.393 6.393 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.819 -1.498 17.067 17.553 hybrid contribution 0.546 -0.796 -1.153 1.503 sum -3.273 -2.294 15.915 16.409 Atomic orbital electron populations 1.21884 0.96502 1.00266 1.00516 1.18387 0.92511 0.91026 0.81331 0.96465 1.21675 1.31727 1.12994 0.91629 0.92850 1.25667 0.95174 0.95738 1.01727 1.69976 1.37240 1.23666 1.24390 0.85519 0.78371 0.78523 0.79293 1.19588 1.19580 1.20902 1.57804 1.70096 1.21068 1.35370 1.21280 1.01559 0.80386 1.00599 1.00772 0.73682 0.71931 0.71429 1.93467 1.69850 1.60481 1.74554 1.93505 1.75605 1.58040 1.73686 1.60675 1.64604 1.29028 1.34606 1.22645 0.97125 0.84117 0.97469 1.23264 1.04764 0.93601 0.93962 1.22755 0.96226 0.98024 0.79305 0.85003 1.22548 0.88193 0.92780 0.98856 1.86413 1.36743 1.42715 1.73417 0.93726 0.91463 0.94499 0.92527 0.94382 0.90410 0.90300 0.92043 0.88346 0.86095 0.88946 0.88599 0.93727 0.75817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.95 71.98 0.64 -5.37 16 2 C 0.27 13.96 2.62 44.24 0.12 14.07 16 3 H 0.02 1.03 6.91 -2.39 -0.02 1.01 16 4 C -0.54 -30.43 8.37 25.60 0.21 -30.22 16 5 H 0.05 3.01 7.65 -2.91 -0.02 2.99 16 6 C 0.02 0.94 5.30 84.66 0.45 1.38 16 7 N -0.91 -52.31 11.32 21.45 0.24 -52.07 16 8 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 N -1.00 -43.60 3.12 -520.44 -1.62 -45.22 16 13 C 0.11 3.84 9.53 127.77 1.22 5.06 16 14 S 2.81 119.98 6.64 -56.49 -0.37 119.60 16 15 O -1.00 -42.94 15.18 -128.00 -1.94 -44.89 16 16 O -1.02 -53.99 16.70 -128.00 -2.14 -56.13 16 17 N -1.05 -33.13 4.14 -527.42 -2.18 -35.31 16 18 C 0.11 2.87 8.71 83.09 0.72 3.59 16 19 C -0.12 -2.15 7.83 30.84 0.24 -1.91 16 20 C 0.14 3.02 4.65 41.79 0.19 3.21 16 21 H 0.13 1.98 8.14 -2.38 -0.02 1.96 16 22 C 0.05 1.12 6.84 71.98 0.49 1.61 16 23 O -0.58 -13.49 12.11 -148.98 -1.80 -15.29 16 24 H 0.04 1.88 6.66 -2.39 -0.02 1.86 16 25 H 0.07 3.43 6.07 -2.39 -0.01 3.41 16 26 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 2.24 7.79 -2.39 -0.02 2.22 16 30 H 0.08 2.66 6.43 -2.39 -0.02 2.65 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.12 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.99 6.92 -2.39 -0.02 1.97 16 35 H 0.10 1.18 8.14 -2.38 -0.02 1.17 16 36 H 0.04 1.12 6.66 -2.39 -0.02 1.11 16 37 H 0.39 5.85 9.12 -74.06 -0.68 5.17 16 Total: -1.00 -76.58 312.38 -3.10 -79.68 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.40 Total: 11.91 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.29 Total: -8.56 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -3.56 Total: -132.60 kcal Atomic # 8 Polarization: -110.42 SS G_CDS: -5.88 Total: -116.31 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 119.98 SS G_CDS: -0.37 Total: 119.60 kcal Total: -76.58 -3.10 -79.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907831850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.379 kcal (2) G-P(sol) polarization free energy of solvation -76.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds