Wall clock time and date at job start Tue Mar 31 2020 00:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.46315 * 2 1 4 4 C 1.54480 * 110.50995 * 237.24761 * 2 1 3 5 5 O 1.44427 * 104.80640 * 265.33606 * 4 2 1 6 6 C 1.44423 * 105.27455 * 319.49019 * 5 4 2 7 7 C 1.54478 * 104.80587 * 40.50758 * 6 5 4 8 8 H 1.08993 * 110.63282 * 217.32302 * 7 6 5 9 9 N 1.46500 * 110.50919 * 94.66509 * 7 6 5 10 10 S 1.65608 * 119.99850 * 100.36268 * 9 7 6 11 11 O 1.42098 * 106.39902 * 311.45654 * 10 9 7 12 12 O 1.42102 * 106.40068 * 178.53769 * 10 9 7 13 13 N 1.65600 * 107.21953 * 64.99769 * 10 9 7 14 14 C 1.46495 * 120.00100 * 270.00384 * 13 10 9 15 15 C 1.46500 * 119.99666 * 89.99709 * 13 10 9 16 16 C 1.50694 * 109.47517 * 265.00027 * 15 13 10 17 17 H 1.08002 * 120.00179 * 0.02562 * 16 15 13 18 18 C 1.37879 * 120.00472 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99350 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00306 * 20 18 16 23 23 H 1.48504 * 109.46636 * 59.99865 * 20 18 16 24 24 H 1.09002 * 109.46838 * 297.39489 * 1 2 3 25 25 H 1.09004 * 109.46834 * 57.38663 * 1 2 3 26 26 H 1.08992 * 109.47628 * 177.39209 * 1 2 3 27 27 H 1.08995 * 110.37403 * 24.17200 * 4 2 1 28 28 H 1.09000 * 110.37433 * 146.39323 * 4 2 1 29 29 H 1.08997 * 110.37087 * 281.67778 * 6 5 4 30 30 H 1.08996 * 110.37465 * 159.34147 * 6 5 4 31 31 H 0.97003 * 120.00461 * 280.35682 * 9 7 6 32 32 H 1.09006 * 109.47078 * 270.00031 * 14 13 10 33 33 H 1.08997 * 109.47320 * 29.99838 * 14 13 10 34 34 H 1.08995 * 109.47441 * 149.99939 * 14 13 10 35 35 H 1.09005 * 109.46643 * 145.00559 * 15 13 10 36 36 H 1.08998 * 109.47481 * 25.00393 * 15 13 10 37 37 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0712 -0.7828 -1.2168 5 8 2.3069 -2.1187 -0.7212 6 6 2.8756 -1.9416 0.5945 7 6 2.0714 -0.7799 1.2190 8 1 2.7200 -0.1442 1.8217 9 7 0.9661 -1.2980 2.0290 10 16 1.1124 -1.3756 3.6768 11 8 2.3647 -1.9934 3.9397 12 8 -0.1220 -1.8819 4.1658 13 7 1.2326 0.1799 4.2320 14 6 2.5480 0.8114 4.3627 15 6 0.0235 0.9245 4.5923 16 6 -0.4208 1.7592 3.4189 17 1 0.1410 1.7370 2.4968 18 6 -1.5446 2.5514 3.5225 19 7 -2.2290 2.5780 4.6452 20 14 -2.0950 3.5866 2.0683 21 1 -3.3207 4.3412 2.4335 22 1 -1.0167 4.5399 1.7029 23 1 -2.3856 2.7011 0.9121 24 1 -0.3633 0.4729 0.9124 25 1 -0.3633 0.5539 -0.8657 26 1 -0.3634 -1.0265 -0.0468 27 1 1.3311 -0.7999 -2.0168 28 1 3.0013 -0.3381 -1.5710 29 1 3.9300 -1.6758 0.5194 30 1 2.7533 -2.8489 1.1860 31 1 0.1484 -1.5956 1.6002 32 1 2.9463 0.6185 5.3589 33 1 3.2250 0.3990 3.6147 34 1 2.4515 1.8866 4.2120 35 1 0.2366 1.5748 5.4407 36 1 -0.7678 0.2246 4.8606 37 1 -3.0194 3.1356 4.7182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921494375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:56 Heat of formation + Delta-G solvation = -119.181526 kcal Electronic energy + Delta-G solvation = -21691.766182 eV Core-core repulsion = 18403.164688 eV Total energy + Delta-G solvation = -3288.601495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.73854 -36.65217 -35.56320 -35.24294 -34.81672 -32.53397 -31.86043 -28.42075 -27.81917 -26.24647 -25.12446 -22.53646 -22.33055 -20.17772 -19.02509 -17.48329 -16.82139 -16.67660 -16.41453 -15.94191 -15.42191 -15.09268 -14.52163 -14.13962 -13.65718 -13.45830 -13.22507 -13.06709 -12.45830 -12.29109 -12.21563 -11.95250 -11.73289 -11.52152 -11.31543 -11.20431 -11.18497 -11.04613 -10.97305 -10.81984 -10.63674 -10.54063 -10.14423 -9.92771 -9.76160 -9.08482 -8.53430 -8.09542 -6.14912 -4.21731 1.26514 3.21414 3.27175 3.28341 3.46013 3.97488 4.12216 4.31773 4.54425 4.86270 4.88110 4.94914 5.11434 5.18733 5.24775 5.34679 5.52674 5.58766 5.70645 5.78071 5.86516 6.00198 6.05104 6.09533 6.22115 6.30540 6.50722 6.58746 6.82774 7.18731 7.35159 7.44157 7.60929 7.81999 8.11195 8.82689 9.44016 10.93208 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.008786 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.164063 B = 3185.982997 C = 4326.462814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 H 0.092 0.908 4 C 0.046 3.954 5 O -0.374 6.374 6 C 0.031 3.969 7 C 0.132 3.868 8 H 0.098 0.902 9 N -1.114 6.114 10 S 2.786 3.214 11 O -1.001 7.001 12 O -0.978 6.978 13 N -0.996 5.996 14 C 0.104 3.896 15 C 0.245 3.755 16 C -0.540 4.540 17 H 0.065 0.935 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.287 1.287 22 H -0.277 1.277 23 H -0.274 1.274 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.417 0.583 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.051 0.949 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.072 -3.431 -8.615 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 H 0.110 0.890 4 C -0.031 4.031 5 O -0.292 6.292 6 C -0.048 4.048 7 C 0.023 3.977 8 H 0.115 0.885 9 N -0.874 5.874 10 S 2.793 3.207 11 O -0.984 6.984 12 O -0.962 6.962 13 N -0.839 5.839 14 C -0.042 4.042 15 C 0.123 3.877 16 C -0.579 4.579 17 H 0.083 0.917 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.720 3.280 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.199 1.199 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.253 0.747 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.033 -4.283 -7.978 12.790 hybrid contribution -0.694 1.271 -1.093 1.814 sum 8.338 -3.012 -9.071 12.684 Atomic orbital electron populations 1.21869 0.93158 1.01957 1.03822 1.22755 0.98381 0.99986 0.93728 0.89002 1.23540 0.99857 0.83083 0.96606 1.89123 1.83185 1.25903 1.31021 1.24006 0.96542 1.00055 0.84190 1.21983 0.88026 0.94239 0.93457 0.88452 1.56167 1.24950 1.79742 1.26497 1.01742 0.72827 0.73369 0.72719 1.93545 1.45374 1.74975 1.84500 1.93596 1.45243 1.78987 1.78360 1.57598 1.13433 1.33259 1.79596 1.21280 0.83050 0.99822 1.00091 1.19218 0.79975 0.92051 0.96491 1.21521 1.10787 1.26234 0.99358 0.91728 1.24959 0.96265 0.96760 0.95912 1.69924 1.17921 1.39554 1.25314 0.86662 0.78115 0.80421 0.82826 1.21275 1.20262 1.19929 0.89393 0.92760 0.92480 0.89047 0.92363 0.91497 0.88204 0.74673 0.93610 0.93093 0.90712 0.94446 0.93103 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 7.87 37.16 0.29 -1.82 16 2 C -0.13 -1.60 3.72 -89.05 -0.33 -1.93 16 3 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.05 0.52 7.18 37.93 0.27 0.79 16 5 O -0.37 -5.08 11.65 -35.23 -0.41 -5.49 16 6 C 0.03 0.40 7.35 37.93 0.28 0.67 16 7 C 0.13 1.80 3.67 -66.36 -0.24 1.56 16 8 H 0.10 1.25 6.17 -51.93 -0.32 0.93 16 9 N -1.11 -17.83 4.83 -3.56 -0.02 -17.85 16 10 S 2.79 53.58 6.02 -107.50 -0.65 52.93 16 11 O -1.00 -19.66 16.97 -57.17 -0.97 -20.63 16 12 O -0.98 -22.43 16.69 -57.17 -0.95 -23.39 16 13 N -1.00 -19.72 3.23 -123.06 -0.40 -20.12 16 14 C 0.10 1.69 10.15 59.84 0.61 2.29 16 15 C 0.24 5.90 5.41 -5.20 -0.03 5.87 16 16 C -0.54 -13.47 9.31 -34.44 -0.32 -13.79 16 17 H 0.06 1.51 6.67 -52.49 -0.35 1.16 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 20 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H 0.09 1.50 6.63 -51.93 -0.34 1.15 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.76 6.94 -51.93 -0.36 0.40 16 27 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.35 8.06 -51.93 -0.42 0.93 16 31 H 0.42 6.43 6.55 -34.48 -0.23 6.20 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.70 6.14 -51.93 -0.32 0.38 16 34 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 35 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 36 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 37 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -31.12 310.80 -7.76 -38.89 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.19 Total: 4.96 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 0.43 Total: -4.76 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.32 Total: -62.18 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -2.33 Total: -49.50 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 53.58 SS G_CDS: -0.65 Total: 52.93 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.12 -7.76 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921494375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.295 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds