Wall clock time and date at job start Tue Mar 31 2020 00:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.46315 * 2 1 4 4 C 1.54480 * 110.50995 * 237.24761 * 2 1 3 5 5 O 1.44427 * 104.80640 * 265.33606 * 4 2 1 6 6 C 1.44423 * 105.27455 * 319.49019 * 5 4 2 7 7 C 1.54478 * 104.80587 * 40.50758 * 6 5 4 8 8 H 1.08993 * 110.63282 * 217.32302 * 7 6 5 9 9 N 1.46500 * 110.50919 * 94.66509 * 7 6 5 10 10 S 1.65608 * 119.99850 * 100.36268 * 9 7 6 11 11 O 1.42098 * 106.39902 * 311.45654 * 10 9 7 12 12 O 1.42102 * 106.40068 * 178.53769 * 10 9 7 13 13 N 1.65600 * 107.21953 * 64.99769 * 10 9 7 14 14 C 1.46495 * 120.00100 * 270.00384 * 13 10 9 15 15 C 1.46500 * 119.99666 * 89.99709 * 13 10 9 16 16 C 1.50694 * 109.47517 * 265.00027 * 15 13 10 17 17 H 1.08002 * 120.00179 * 0.02562 * 16 15 13 18 18 C 1.37879 * 120.00472 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99350 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00306 * 20 18 16 23 23 H 1.48504 * 109.46636 * 59.99865 * 20 18 16 24 24 H 1.09002 * 109.46838 * 297.39489 * 1 2 3 25 25 H 1.09004 * 109.46834 * 57.38663 * 1 2 3 26 26 H 1.08992 * 109.47628 * 177.39209 * 1 2 3 27 27 H 1.08995 * 110.37403 * 24.17200 * 4 2 1 28 28 H 1.09000 * 110.37433 * 146.39323 * 4 2 1 29 29 H 1.08997 * 110.37087 * 281.67778 * 6 5 4 30 30 H 1.08996 * 110.37465 * 159.34147 * 6 5 4 31 31 H 0.97003 * 120.00461 * 280.35682 * 9 7 6 32 32 H 1.09006 * 109.47078 * 270.00031 * 14 13 10 33 33 H 1.08997 * 109.47320 * 29.99838 * 14 13 10 34 34 H 1.08995 * 109.47441 * 149.99939 * 14 13 10 35 35 H 1.09005 * 109.46643 * 145.00559 * 15 13 10 36 36 H 1.08998 * 109.47481 * 25.00393 * 15 13 10 37 37 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0712 -0.7828 -1.2168 5 8 2.3069 -2.1187 -0.7212 6 6 2.8756 -1.9416 0.5945 7 6 2.0714 -0.7799 1.2190 8 1 2.7200 -0.1442 1.8217 9 7 0.9661 -1.2980 2.0290 10 16 1.1124 -1.3756 3.6768 11 8 2.3647 -1.9934 3.9397 12 8 -0.1220 -1.8819 4.1658 13 7 1.2326 0.1799 4.2320 14 6 2.5480 0.8114 4.3627 15 6 0.0235 0.9245 4.5923 16 6 -0.4208 1.7592 3.4189 17 1 0.1410 1.7370 2.4968 18 6 -1.5446 2.5514 3.5225 19 7 -2.2290 2.5780 4.6452 20 14 -2.0950 3.5866 2.0683 21 1 -3.3207 4.3412 2.4335 22 1 -1.0167 4.5399 1.7029 23 1 -2.3856 2.7011 0.9121 24 1 -0.3633 0.4729 0.9124 25 1 -0.3633 0.5539 -0.8657 26 1 -0.3634 -1.0265 -0.0468 27 1 1.3311 -0.7999 -2.0168 28 1 3.0013 -0.3381 -1.5710 29 1 3.9300 -1.6758 0.5194 30 1 2.7533 -2.8489 1.1860 31 1 0.1484 -1.5956 1.6002 32 1 2.9463 0.6185 5.3589 33 1 3.2250 0.3990 3.6147 34 1 2.4515 1.8866 4.2120 35 1 0.2366 1.5748 5.4407 36 1 -0.7678 0.2246 4.8606 37 1 -3.0194 3.1356 4.7182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921494375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:55 Heat of formation + Delta-G solvation = -143.532949 kcal Electronic energy + Delta-G solvation = -21692.822139 eV Core-core repulsion = 18403.164688 eV Total energy + Delta-G solvation = -3289.657452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73773 -38.29028 -37.21851 -36.89245 -35.96407 -34.45970 -32.94534 -29.73382 -29.38974 -27.23130 -26.74392 -24.18507 -23.52470 -21.22465 -20.46431 -18.98329 -18.49369 -18.25762 -17.80114 -17.06972 -16.88291 -16.38706 -16.03066 -15.29427 -15.12919 -14.91139 -14.58295 -14.21860 -14.00084 -13.91970 -13.42585 -13.36900 -13.21445 -13.05299 -12.98871 -12.88715 -12.55000 -12.47778 -12.33643 -12.15567 -12.02917 -11.82404 -11.72755 -11.56429 -10.91204 -10.54895 -10.23904 -9.75497 -8.14102 -6.27338 -0.27819 1.45386 1.47024 1.53939 1.98977 2.44716 2.61668 3.05603 3.18227 3.44022 3.51186 3.86805 3.92792 4.03502 4.18477 4.29875 4.36695 4.59528 4.70986 4.78925 4.82487 4.85625 4.91345 5.02776 5.06157 5.09532 5.23162 5.29192 5.42262 5.51911 5.77064 5.87728 5.90203 6.12643 6.13472 6.85557 7.42737 8.94205 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.008786 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.164063 B = 3185.982997 C = 4326.462814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 H 0.107 0.893 4 C 0.048 3.952 5 O -0.392 6.392 6 C 0.032 3.968 7 C 0.119 3.881 8 H 0.109 0.891 9 N -1.107 6.107 10 S 2.801 3.199 11 O -1.003 7.003 12 O -1.021 7.021 13 N -1.001 6.001 14 C 0.094 3.906 15 C 0.258 3.742 16 C -0.535 4.535 17 H 0.082 0.918 18 C 0.008 3.992 19 N -0.933 5.933 20 Si 0.956 3.044 21 H -0.295 1.295 22 H -0.263 1.263 23 H -0.262 1.262 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.419 0.581 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.020 0.980 36 H 0.015 0.985 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.773 -2.764 -11.038 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 H 0.126 0.874 4 C -0.028 4.028 5 O -0.311 6.311 6 C -0.047 4.047 7 C 0.011 3.989 8 H 0.127 0.873 9 N -0.869 5.869 10 S 2.809 3.191 11 O -0.986 6.986 12 O -1.005 7.005 13 N -0.843 5.843 14 C -0.051 4.051 15 C 0.134 3.866 16 C -0.574 4.574 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.573 5.573 20 Si 0.781 3.219 21 H -0.221 1.221 22 H -0.188 1.188 23 H -0.186 1.186 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.257 0.743 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.777 -3.623 -10.413 15.418 hybrid contribution -1.160 1.010 -0.348 1.577 sum 9.617 -2.613 -10.761 14.667 Atomic orbital electron populations 1.21834 0.94551 1.01768 1.02727 1.22778 0.97135 1.00905 0.93724 0.87439 1.23675 1.01330 0.81835 0.95997 1.89110 1.83450 1.27415 1.31172 1.24025 0.97709 0.99095 0.83842 1.22337 0.87513 0.95128 0.93888 0.87320 1.55904 1.25974 1.79764 1.25302 1.01114 0.71817 0.72904 0.73261 1.93535 1.45135 1.74897 1.85044 1.93535 1.47281 1.79889 1.79811 1.57474 1.13526 1.33108 1.80147 1.21552 0.81656 1.00077 1.01798 1.18769 0.80780 0.91058 0.95979 1.21855 1.10481 1.25207 0.99877 0.90019 1.25835 0.96585 0.98254 0.98402 1.70077 1.18615 1.40908 1.27670 0.85633 0.77540 0.78953 0.79765 1.22087 1.18818 1.18621 0.92586 0.91349 0.92576 0.88072 0.89854 0.88886 0.89416 0.74350 0.92698 0.90089 0.90421 0.96239 0.96695 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 7.87 71.98 0.57 -3.34 16 2 C -0.13 -2.72 3.72 -9.78 -0.04 -2.76 16 3 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 4 C 0.05 0.89 7.18 72.49 0.52 1.41 16 5 O -0.39 -9.54 11.65 -148.98 -1.74 -11.28 16 6 C 0.03 0.73 7.35 72.48 0.53 1.26 16 7 C 0.12 2.95 3.67 46.01 0.17 3.11 16 8 H 0.11 2.42 6.17 -2.39 -0.01 2.40 16 9 N -1.11 -34.29 4.83 -165.17 -0.80 -35.08 16 10 S 2.80 107.07 6.02 -56.49 -0.34 106.73 16 11 O -1.00 -38.20 16.97 -128.00 -2.17 -40.37 16 12 O -1.02 -48.15 16.69 -128.00 -2.14 -50.28 16 13 N -1.00 -39.26 3.23 -543.25 -1.75 -41.02 16 14 C 0.09 2.89 10.15 127.77 1.30 4.18 16 15 C 0.26 12.71 5.41 85.63 0.46 13.18 16 16 C -0.54 -26.61 9.31 25.60 0.24 -26.37 16 17 H 0.08 3.70 6.67 -2.91 -0.02 3.68 16 18 C 0.01 0.43 5.46 84.66 0.46 0.90 16 19 N -0.93 -53.54 13.29 21.45 0.28 -53.25 16 20 Si 0.96 40.51 29.54 68.60 2.03 42.54 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 H 0.06 1.82 6.63 -2.39 -0.02 1.80 16 25 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.06 1.42 6.94 -2.39 -0.02 1.41 16 27 H 0.10 1.69 7.87 -2.39 -0.02 1.67 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 2.22 8.06 -2.39 -0.02 2.20 16 31 H 0.42 12.75 6.55 -96.74 -0.63 12.12 16 32 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.08 1.97 6.14 -2.39 -0.01 1.96 16 34 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16 35 H 0.02 1.02 8.11 -2.38 -0.02 1.00 16 36 H 0.02 0.84 6.91 -2.39 -0.02 0.83 16 37 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -67.23 310.80 -1.96 -69.19 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.44 Total: 21.25 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.21 Total: -8.43 kcal Atomic # 7 Polarization: -127.09 SS G_CDS: -2.26 Total: -129.35 kcal Atomic # 8 Polarization: -95.89 SS G_CDS: -6.04 Total: -101.94 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 107.07 SS G_CDS: -0.34 Total: 106.73 kcal Total: -67.23 -1.96 -69.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921494375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.338 kcal (2) G-P(sol) polarization free energy of solvation -67.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds