Wall clock time and date at job start Tue Mar 31 2020 00:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.46069 * 2 1 4 4 C 1.54477 * 110.51007 * 122.75470 * 2 1 3 5 5 O 1.44433 * 104.80629 * 142.62259 * 4 2 1 6 6 C 1.44422 * 105.26990 * 319.48791 * 5 4 2 7 7 C 1.54482 * 104.81003 * 40.50868 * 6 5 4 8 8 H 1.09001 * 110.62277 * 94.71746 * 7 6 5 9 9 N 1.46494 * 110.51426 * 217.37988 * 7 6 5 10 10 S 1.65608 * 119.99583 * 259.64102 * 9 7 6 11 11 O 1.42102 * 106.39826 * 178.53759 * 10 9 7 12 12 O 1.42099 * 106.40116 * 311.45886 * 10 9 7 13 13 N 1.65600 * 107.21755 * 65.00217 * 10 9 7 14 14 C 1.46498 * 119.99764 * 269.99477 * 13 10 9 15 15 C 1.46495 * 120.00160 * 89.99868 * 13 10 9 16 16 C 1.50707 * 109.47008 * 94.99771 * 15 13 10 17 17 H 1.07992 * 119.99973 * 0.02562 * 16 15 13 18 18 C 1.37881 * 119.99831 * 180.02562 * 16 15 13 19 19 N 1.31512 * 119.99972 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00147 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46861 * 90.00078 * 20 18 16 22 22 H 1.48493 * 109.47384 * 210.00107 * 20 18 16 23 23 H 1.48500 * 109.47063 * 330.00412 * 20 18 16 24 24 H 1.09006 * 109.47445 * 182.60432 * 1 2 3 25 25 H 1.09004 * 109.47086 * 302.60825 * 1 2 3 26 26 H 1.09004 * 109.47175 * 62.60743 * 1 2 3 27 27 H 1.09003 * 110.37240 * 261.45268 * 4 2 1 28 28 H 1.08996 * 110.37686 * 23.79171 * 4 2 1 29 29 H 1.09006 * 110.37008 * 281.68025 * 6 5 4 30 30 H 1.08997 * 110.37485 * 159.34463 * 6 5 4 31 31 H 0.96995 * 120.00292 * 79.91565 * 9 7 6 32 32 H 1.09006 * 109.46841 * 90.00490 * 14 13 10 33 33 H 1.08993 * 109.47236 * 209.99995 * 14 13 10 34 34 H 1.09000 * 109.47376 * 330.00557 * 14 13 10 35 35 H 1.09001 * 109.47281 * 214.99889 * 15 13 10 36 36 H 1.08998 * 109.47319 * 335.00093 * 15 13 10 37 37 H 0.97002 * 119.99901 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0712 -0.7828 1.2168 5 8 3.2398 -1.4724 0.7219 6 6 2.8756 -1.9415 -0.5945 7 6 2.0713 -0.7799 -1.2191 8 1 2.7200 -0.1441 -1.8218 9 7 0.9660 -1.2980 -2.0290 10 16 1.1124 -1.3755 -3.6768 11 8 -0.0958 -1.9461 -4.1605 12 8 1.5956 -0.1069 -4.0968 13 7 2.3119 -2.4671 -4.0115 14 6 3.7010 -2.0164 -4.1273 15 6 1.9839 -3.8834 -4.1919 16 6 1.8042 -4.1744 -5.6597 17 1 1.9229 -3.3836 -6.3854 18 6 1.4883 -5.4504 -6.0759 19 7 1.3320 -5.7045 -7.3567 20 14 1.2836 -6.8185 -4.8205 21 1 -0.1334 -6.8786 -4.3805 22 1 1.6667 -8.1151 -5.4346 23 1 2.1549 -6.5492 -3.6485 24 1 -0.3634 -1.0266 0.0467 25 1 -0.3633 0.5538 0.8657 26 1 -0.3634 0.4728 -0.9125 27 1 2.3464 -0.0965 2.0177 28 1 1.3285 -1.4990 1.5682 29 1 2.2562 -2.8354 -0.5209 30 1 3.7687 -2.1453 -1.1853 31 1 0.1470 -1.5919 -1.6006 32 1 4.1811 -2.0642 -3.1499 33 1 4.2348 -2.6603 -4.8261 34 1 3.7206 -0.9893 -4.4919 35 1 2.7932 -4.4971 -3.7963 36 1 1.0604 -4.1131 -3.6604 37 1 1.1101 -6.6022 -7.6495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921494376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:58 Heat of formation + Delta-G solvation = -111.934630 kcal Electronic energy + Delta-G solvation = -21294.204213 eV Core-core repulsion = 18005.916967 eV Total energy + Delta-G solvation = -3288.287246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95352 -36.73447 -35.69793 -35.32217 -35.24905 -32.43269 -32.18125 -28.60386 -28.29750 -26.51348 -25.21081 -22.97662 -21.95752 -20.44018 -19.28595 -17.61753 -16.99123 -16.85935 -16.47419 -16.15940 -15.46525 -15.32026 -14.78790 -14.30786 -14.05464 -13.65759 -13.22199 -13.11263 -12.61898 -12.56212 -12.50373 -12.40665 -11.79905 -11.61827 -11.53172 -11.37447 -11.33272 -11.27407 -11.20411 -10.90866 -10.71700 -10.49928 -10.26676 -10.04590 -9.59201 -9.45235 -8.61869 -8.17925 -6.10489 -4.10123 1.06419 3.23973 3.28531 3.30203 3.34666 3.78060 4.06085 4.21616 4.35849 4.48740 4.66529 4.80263 4.95545 5.02007 5.15700 5.20482 5.28881 5.37329 5.43096 5.51572 5.57885 5.67527 5.76688 5.88733 5.94055 6.01580 6.17650 6.41227 6.56514 6.67202 6.92746 7.07448 7.35580 7.54988 8.46240 8.94374 9.48286 11.03069 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.006162 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.546666 B = 4542.600449 C = 4925.479145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 H 0.093 0.907 4 C 0.048 3.952 5 O -0.372 6.372 6 C 0.027 3.973 7 C 0.123 3.877 8 H 0.107 0.893 9 N -1.125 6.125 10 S 2.780 3.220 11 O -0.960 6.960 12 O -0.991 6.991 13 N -0.990 5.990 14 C 0.091 3.909 15 C 0.228 3.772 16 C -0.533 4.533 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.872 3.128 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.265 1.265 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.414 0.586 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.890 9.406 17.383 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 H 0.111 0.889 4 C -0.030 4.030 5 O -0.290 6.290 6 C -0.052 4.052 7 C 0.014 3.986 8 H 0.124 0.876 9 N -0.885 5.885 10 S 2.787 3.213 11 O -0.943 6.943 12 O -0.975 6.975 13 N -0.832 5.832 14 C -0.055 4.055 15 C 0.105 3.895 16 C -0.572 4.572 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.699 3.301 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.189 1.189 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.250 0.750 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.720 9.772 16.627 19.363 hybrid contribution -0.480 -1.220 0.800 1.536 sum 1.239 8.551 17.427 19.452 Atomic orbital electron populations 1.21754 0.93715 1.02147 1.02620 1.22749 0.97368 1.00632 0.94376 0.88878 1.23536 0.88167 0.95025 0.96224 1.89146 1.34996 1.73959 1.30934 1.24089 1.00460 0.96745 0.83894 1.22097 0.88143 0.94835 0.93512 0.87552 1.56480 1.24307 1.79904 1.27833 1.02063 0.73516 0.73165 0.72559 1.93659 1.44820 1.78461 1.77407 1.93540 1.81929 1.41477 1.80533 1.57363 1.19285 1.21714 1.84813 1.21450 0.82506 1.00766 1.00807 1.19435 0.95784 0.76051 0.98270 1.21376 1.48422 0.96525 0.90887 0.90411 1.24873 0.94511 0.98413 0.95155 1.69895 1.47866 1.21363 1.14134 0.86922 0.79212 0.81987 0.81990 1.19850 1.20941 1.18938 0.92166 0.92034 0.91423 0.88984 0.92021 0.91121 0.88086 0.75027 0.94225 0.89947 0.91188 0.94805 0.95357 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 7.89 37.16 0.29 -0.89 16 2 C -0.13 -1.19 3.72 -89.05 -0.33 -1.52 16 3 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.05 0.42 7.18 37.93 0.27 0.69 16 5 O -0.37 -4.37 11.65 -35.23 -0.41 -4.78 16 6 C 0.03 0.30 7.35 37.94 0.28 0.58 16 7 C 0.12 1.40 3.79 -66.36 -0.25 1.15 16 8 H 0.11 1.23 7.57 -51.93 -0.39 0.84 16 9 N -1.13 -14.86 4.83 -3.56 -0.02 -14.88 16 10 S 2.78 51.49 6.08 -107.50 -0.65 50.84 16 11 O -0.96 -21.88 17.11 -57.17 -0.98 -22.86 16 12 O -0.99 -19.65 16.12 -57.17 -0.92 -20.57 16 13 N -0.99 -19.02 3.23 -123.05 -0.40 -19.42 16 14 C 0.09 1.44 10.68 59.85 0.64 2.08 16 15 C 0.23 5.18 4.15 -5.19 -0.02 5.16 16 16 C -0.53 -14.98 9.94 -34.44 -0.34 -15.32 16 17 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.89 -27.35 13.96 55.43 0.77 -26.57 16 20 Si 0.87 20.82 27.47 -169.99 -4.67 16.15 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 24 H 0.06 0.47 6.88 -51.93 -0.36 0.11 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.50 7.83 -51.93 -0.41 0.10 16 29 H 0.07 0.81 8.06 -51.93 -0.42 0.40 16 30 H 0.10 1.11 6.67 -51.93 -0.35 0.76 16 31 H 0.41 4.74 6.54 -34.48 -0.23 4.51 16 32 H 0.04 0.49 6.67 -51.93 -0.35 0.14 16 33 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 34 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 35 H 0.03 0.73 7.17 -51.93 -0.37 0.36 16 36 H 0.03 0.64 7.04 -51.93 -0.37 0.28 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 309.53 15.07 4.66 4.66 Total: -1.00 -34.78 309.53 -7.45 -42.23 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.28 Total: 1.25 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 0.44 Total: -6.06 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.36 Total: -60.87 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -2.31 Total: -48.21 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: 51.49 SS G_CDS: -0.65 Total: 50.84 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.78 -7.45 -42.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921494376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.707 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds