Wall clock time and date at job start Tue Mar 31 2020 00:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.46069 * 2 1 4 4 C 1.54477 * 110.51007 * 122.75470 * 2 1 3 5 5 O 1.44433 * 104.80629 * 142.62259 * 4 2 1 6 6 C 1.44422 * 105.26990 * 319.48791 * 5 4 2 7 7 C 1.54482 * 104.81003 * 40.50868 * 6 5 4 8 8 H 1.09001 * 110.62277 * 94.71746 * 7 6 5 9 9 N 1.46494 * 110.51426 * 217.37988 * 7 6 5 10 10 S 1.65608 * 119.99583 * 259.64102 * 9 7 6 11 11 O 1.42102 * 106.39826 * 178.53759 * 10 9 7 12 12 O 1.42099 * 106.40116 * 311.45886 * 10 9 7 13 13 N 1.65600 * 107.21755 * 65.00217 * 10 9 7 14 14 C 1.46498 * 119.99764 * 269.99477 * 13 10 9 15 15 C 1.46495 * 120.00160 * 89.99868 * 13 10 9 16 16 C 1.50707 * 109.47008 * 94.99771 * 15 13 10 17 17 H 1.07992 * 119.99973 * 0.02562 * 16 15 13 18 18 C 1.37881 * 119.99831 * 180.02562 * 16 15 13 19 19 N 1.31512 * 119.99972 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00147 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46861 * 90.00078 * 20 18 16 22 22 H 1.48493 * 109.47384 * 210.00107 * 20 18 16 23 23 H 1.48500 * 109.47063 * 330.00412 * 20 18 16 24 24 H 1.09006 * 109.47445 * 182.60432 * 1 2 3 25 25 H 1.09004 * 109.47086 * 302.60825 * 1 2 3 26 26 H 1.09004 * 109.47175 * 62.60743 * 1 2 3 27 27 H 1.09003 * 110.37240 * 261.45268 * 4 2 1 28 28 H 1.08996 * 110.37686 * 23.79171 * 4 2 1 29 29 H 1.09006 * 110.37008 * 281.68025 * 6 5 4 30 30 H 1.08997 * 110.37485 * 159.34463 * 6 5 4 31 31 H 0.96995 * 120.00292 * 79.91565 * 9 7 6 32 32 H 1.09006 * 109.46841 * 90.00490 * 14 13 10 33 33 H 1.08993 * 109.47236 * 209.99995 * 14 13 10 34 34 H 1.09000 * 109.47376 * 330.00557 * 14 13 10 35 35 H 1.09001 * 109.47281 * 214.99889 * 15 13 10 36 36 H 1.08998 * 109.47319 * 335.00093 * 15 13 10 37 37 H 0.97002 * 119.99901 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0712 -0.7828 1.2168 5 8 3.2398 -1.4724 0.7219 6 6 2.8756 -1.9415 -0.5945 7 6 2.0713 -0.7799 -1.2191 8 1 2.7200 -0.1441 -1.8218 9 7 0.9660 -1.2980 -2.0290 10 16 1.1124 -1.3755 -3.6768 11 8 -0.0958 -1.9461 -4.1605 12 8 1.5956 -0.1069 -4.0968 13 7 2.3119 -2.4671 -4.0115 14 6 3.7010 -2.0164 -4.1273 15 6 1.9839 -3.8834 -4.1919 16 6 1.8042 -4.1744 -5.6597 17 1 1.9229 -3.3836 -6.3854 18 6 1.4883 -5.4504 -6.0759 19 7 1.3320 -5.7045 -7.3567 20 14 1.2836 -6.8185 -4.8205 21 1 -0.1334 -6.8786 -4.3805 22 1 1.6667 -8.1151 -5.4346 23 1 2.1549 -6.5492 -3.6485 24 1 -0.3634 -1.0266 0.0467 25 1 -0.3633 0.5538 0.8657 26 1 -0.3634 0.4728 -0.9125 27 1 2.3464 -0.0965 2.0177 28 1 1.3285 -1.4990 1.5682 29 1 2.2562 -2.8354 -0.5209 30 1 3.7687 -2.1453 -1.1853 31 1 0.1470 -1.5919 -1.6006 32 1 4.1811 -2.0642 -3.1499 33 1 4.2348 -2.6603 -4.8261 34 1 3.7206 -0.9893 -4.4919 35 1 2.7932 -4.4971 -3.7963 36 1 1.0604 -4.1131 -3.6604 37 1 1.1101 -6.6022 -7.6495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921494376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:58 Heat of formation + Delta-G solvation = -140.821170 kcal Electronic energy + Delta-G solvation = -21295.456827 eV Core-core repulsion = 18005.916967 eV Total energy + Delta-G solvation = -3289.539860 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.76738 -38.33103 -37.30688 -36.90069 -36.23394 -34.50716 -33.02677 -30.29580 -29.37335 -27.18530 -26.78595 -23.84511 -23.77752 -21.32460 -20.53484 -19.22256 -18.81220 -18.34252 -17.60457 -17.12198 -16.82264 -16.25518 -16.14077 -15.70564 -15.37080 -14.90062 -14.52136 -14.42963 -14.10802 -13.94613 -13.55864 -13.41596 -13.28008 -13.16101 -13.10458 -12.99347 -12.71044 -12.37521 -12.28988 -12.12116 -11.96589 -11.93799 -11.70105 -11.64967 -10.85478 -10.77827 -10.48347 -9.78188 -8.28420 -6.34348 -0.40060 1.37632 1.41289 1.49708 1.96266 2.35903 2.56120 3.05520 3.08064 3.36583 3.47307 3.74773 3.88625 4.00847 4.14202 4.24038 4.35497 4.50637 4.60037 4.71013 4.72465 4.77552 4.85803 4.94197 4.94740 5.05205 5.09257 5.20458 5.31432 5.35989 5.48628 5.68291 5.79390 6.06812 6.31352 6.69190 7.28728 8.89256 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.006162 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.546666 B = 4542.600449 C = 4925.479145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 H 0.103 0.897 4 C 0.045 3.955 5 O -0.388 6.388 6 C 0.027 3.973 7 C 0.113 3.887 8 H 0.105 0.895 9 N -1.104 6.104 10 S 2.796 3.204 11 O -1.009 7.009 12 O -1.009 7.009 13 N -0.997 5.997 14 C 0.084 3.916 15 C 0.235 3.765 16 C -0.544 4.544 17 H 0.027 0.973 18 C 0.006 3.994 19 N -0.950 5.950 20 Si 0.944 3.056 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.226 1.226 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.424 0.576 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.036 0.964 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 9.214 20.907 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 H 0.122 0.878 4 C -0.031 4.031 5 O -0.307 6.307 6 C -0.052 4.052 7 C 0.005 3.995 8 H 0.123 0.877 9 N -0.869 5.869 10 S 2.803 3.197 11 O -0.992 6.992 12 O -0.992 6.992 13 N -0.838 5.838 14 C -0.061 4.061 15 C 0.111 3.889 16 C -0.583 4.583 17 H 0.045 0.955 18 C -0.192 4.192 19 N -0.590 5.590 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.148 1.148 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.130 0.870 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.263 0.737 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.246 9.614 20.169 22.456 hybrid contribution -0.619 -1.010 -0.309 1.224 sum 1.627 8.604 19.860 21.705 Atomic orbital electron populations 1.21791 0.93118 1.02657 1.03005 1.22772 0.97874 1.00856 0.93144 0.87831 1.23720 0.87622 0.95383 0.96373 1.89136 1.36318 1.74319 1.30881 1.24068 1.00547 0.96491 0.84086 1.22352 0.87588 0.95441 0.94092 0.87692 1.55935 1.25472 1.79728 1.25809 1.01311 0.72320 0.72504 0.73522 1.93589 1.47133 1.79209 1.79318 1.93512 1.81972 1.42079 1.81619 1.57280 1.20735 1.20331 1.85497 1.21672 0.80996 1.00396 1.03054 1.19216 0.96903 0.78286 0.94544 1.21737 1.47966 0.95440 0.93177 0.95488 1.25954 0.94039 1.01698 0.97486 1.70077 1.49731 1.22260 1.16940 0.85783 0.79919 0.77690 0.80048 1.19490 1.20667 1.14839 0.91773 0.89992 0.92617 0.87030 0.91126 0.91081 0.87696 0.73677 0.89937 0.91112 0.91050 0.92349 0.94636 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 7.89 71.98 0.57 -1.44 16 2 C -0.13 -1.90 3.72 -9.78 -0.04 -1.94 16 3 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.05 0.64 7.18 72.48 0.52 1.17 16 5 O -0.39 -7.89 11.65 -148.98 -1.74 -9.62 16 6 C 0.03 0.53 7.35 72.49 0.53 1.06 16 7 C 0.11 2.29 3.79 46.01 0.17 2.47 16 8 H 0.11 2.18 7.57 -2.39 -0.02 2.17 16 9 N -1.10 -27.13 4.83 -165.17 -0.80 -27.93 16 10 S 2.80 102.37 6.08 -56.49 -0.34 102.02 16 11 O -1.01 -46.58 17.11 -128.00 -2.19 -48.77 16 12 O -1.01 -39.73 16.12 -128.00 -2.06 -41.80 16 13 N -1.00 -37.47 3.23 -543.23 -1.75 -39.22 16 14 C 0.08 2.55 10.68 127.77 1.36 3.92 16 15 C 0.24 10.39 4.15 85.64 0.36 10.75 16 16 C -0.54 -31.25 9.94 25.60 0.25 -31.00 16 17 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 18 C 0.01 0.34 5.47 84.66 0.46 0.80 16 19 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 20 Si 0.94 42.14 27.47 68.60 1.88 44.02 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.23 -8.62 6.54 99.48 0.65 -7.96 16 24 H 0.06 0.81 6.88 -2.38 -0.02 0.80 16 25 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.05 0.90 7.85 -2.38 -0.02 0.88 16 27 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 0.89 7.83 -2.39 -0.02 0.87 16 29 H 0.07 1.40 8.06 -2.38 -0.02 1.39 16 30 H 0.10 1.95 6.67 -2.39 -0.02 1.93 16 31 H 0.42 8.87 6.54 -96.75 -0.63 8.23 16 32 H 0.08 1.80 6.67 -2.38 -0.02 1.78 16 33 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 34 H 0.07 2.14 7.02 -2.39 -0.02 2.12 16 35 H 0.06 2.32 7.17 -2.39 -0.02 2.30 16 36 H 0.04 1.54 7.04 -2.39 -0.02 1.52 16 37 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -77.72 309.53 -2.12 -79.83 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.39 Total: 15.43 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 4.20 Total: -14.21 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -2.25 Total: -126.90 kcal Atomic # 8 Polarization: -94.20 SS G_CDS: -5.99 Total: -100.19 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.02 kcal Atomic # 16 Polarization: 102.37 SS G_CDS: -0.34 Total: 102.02 kcal Total: -77.72 -2.12 -79.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921494376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.990 kcal (2) G-P(sol) polarization free energy of solvation -77.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds