Wall clock time and date at job start Tue Mar 31 2020 00:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.45512 * 2 1 4 4 C 1.54475 * 110.51171 * 122.75306 * 2 1 3 5 5 O 1.44424 * 104.80330 * 94.66528 * 4 2 1 6 6 C 1.44417 * 105.27586 * 40.51088 * 5 4 2 7 7 C 1.54479 * 104.80701 * 319.48870 * 6 5 4 8 8 H 1.08998 * 110.51380 * 265.33413 * 7 6 5 9 9 N 1.46498 * 110.62886 * 142.67568 * 7 6 5 10 10 S 1.65607 * 119.99746 * 100.61883 * 9 7 6 11 11 O 1.42098 * 106.40333 * 176.31286 * 10 9 7 12 12 O 1.42102 * 106.40001 * 309.23780 * 10 9 7 13 13 N 1.65602 * 107.21700 * 62.77583 * 10 9 7 14 14 C 1.46506 * 119.99884 * 264.61459 * 13 10 9 15 15 C 1.46502 * 120.00208 * 84.61515 * 13 10 9 16 16 C 1.50701 * 109.46904 * 94.87105 * 15 13 10 17 17 H 1.08005 * 120.00295 * 4.74759 * 16 15 13 18 18 C 1.37877 * 120.00025 * 184.75005 * 16 15 13 19 19 N 1.31515 * 120.00007 * 5.29172 * 18 16 15 20 20 Si 1.86800 * 119.99839 * 185.29316 * 18 16 15 21 21 H 1.48501 * 109.47437 * 64.99688 * 20 18 16 22 22 H 1.48499 * 109.47134 * 184.99820 * 20 18 16 23 23 H 1.48504 * 109.47380 * 304.99481 * 20 18 16 24 24 H 1.09001 * 109.47291 * 177.81258 * 1 2 3 25 25 H 1.08998 * 109.46787 * 297.81911 * 1 2 3 26 26 H 1.09000 * 109.46922 * 57.81214 * 1 2 3 27 27 H 1.09000 * 110.37413 * 213.49882 * 4 2 1 28 28 H 1.09007 * 110.37065 * 335.83204 * 4 2 1 29 29 H 1.08998 * 110.37641 * 200.65290 * 6 5 4 30 30 H 1.09002 * 110.46573 * 78.36430 * 6 5 4 31 31 H 0.96996 * 120.00673 * 280.61515 * 9 7 6 32 32 H 1.09001 * 109.46867 * 90.00587 * 14 13 10 33 33 H 1.09000 * 109.46808 * 210.00086 * 14 13 10 34 34 H 1.09000 * 109.47273 * 330.00674 * 14 13 10 35 35 H 1.08997 * 109.47400 * 214.86902 * 15 13 10 36 36 H 1.08992 * 109.47002 * 334.87717 * 15 13 10 37 37 H 0.97002 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7828 1.2168 5 8 2.3070 -2.1186 0.7211 6 6 2.8757 -1.9414 -0.5946 7 6 2.0714 -0.7798 -1.2191 8 1 1.2490 -1.1653 -1.8218 9 7 2.9432 0.0747 -2.0291 10 16 2.9586 -0.0841 -3.6775 11 8 3.8256 0.9283 -4.1700 12 8 3.1469 -1.4668 -3.9456 13 7 1.4409 0.2952 -4.2207 14 6 0.4615 -0.7679 -4.4596 15 6 1.0776 1.6937 -4.4623 16 6 1.2927 2.0245 -5.9168 17 1 1.5894 1.2500 -6.6086 18 6 1.1109 3.3158 -6.3643 19 7 0.8519 4.2787 -5.5067 20 14 1.2325 3.6978 -8.1888 21 1 0.1340 3.0093 -8.9130 22 1 1.1194 5.1639 -8.3962 23 1 2.5407 3.2240 -8.7077 24 1 -0.3634 -1.0269 -0.0392 25 1 -0.3633 0.4796 0.9089 26 1 -0.3633 0.5474 -0.8697 27 1 3.0024 -0.3392 1.5697 28 1 1.3311 -0.7999 2.0168 29 1 2.7535 -2.8487 -1.1862 30 1 3.9304 -1.6763 -0.5213 31 1 3.5113 0.7334 -1.6000 32 1 -0.1082 -0.9486 -3.5480 33 1 -0.2163 -0.4647 -5.2576 34 1 0.9803 -1.6812 -4.7508 35 1 0.0291 1.8462 -4.2063 36 1 1.7001 2.3425 -3.8463 37 1 0.7243 5.1872 -5.8216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921494377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:01 Heat of formation + Delta-G solvation = -123.192134 kcal Electronic energy + Delta-G solvation = -21135.490930 eV Core-core repulsion = 17846.715523 eV Total energy + Delta-G solvation = -3288.775408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80691 -36.62828 -35.55109 -35.19697 -34.88367 -32.47902 -32.45751 -28.29044 -27.79507 -26.35935 -25.09835 -22.62556 -22.31570 -20.76173 -19.03578 -17.39052 -17.03591 -16.58916 -16.36110 -15.88009 -15.38212 -15.14975 -14.79155 -14.30919 -13.65262 -13.43229 -13.34982 -12.83722 -12.65992 -12.37054 -12.30948 -12.19411 -11.91171 -11.64000 -11.49168 -11.21901 -11.19854 -11.08352 -10.96690 -10.89101 -10.73932 -10.52051 -10.07487 -9.96345 -9.81038 -9.30977 -8.45842 -8.11564 -6.08980 -4.12266 1.17965 3.32033 3.36046 3.37328 3.41333 3.91432 4.07094 4.35165 4.43244 4.63913 4.74402 4.87696 5.04591 5.10417 5.26192 5.34520 5.37359 5.51296 5.58593 5.62661 5.70488 5.78676 5.88844 5.93163 6.05972 6.14720 6.27393 6.50758 6.64907 7.03814 7.19914 7.36653 7.56702 7.89209 8.17643 8.89493 9.52733 10.99699 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028531 B = 0.005443 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.148567 B = 5142.990174 C = 5521.090504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.047 3.953 5 O -0.373 6.373 6 C 0.031 3.969 7 C 0.129 3.871 8 H 0.100 0.900 9 N -1.124 6.124 10 S 2.779 3.221 11 O -0.960 6.960 12 O -0.997 6.997 13 N -0.995 5.995 14 C 0.093 3.907 15 C 0.259 3.741 16 C -0.530 4.530 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.413 0.587 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 -8.838 12.433 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 H 0.113 0.887 4 C -0.030 4.030 5 O -0.291 6.291 6 C -0.048 4.048 7 C 0.020 3.980 8 H 0.118 0.882 9 N -0.882 5.882 10 S 2.786 3.214 11 O -0.944 6.944 12 O -0.980 6.980 13 N -0.838 5.838 14 C -0.054 4.054 15 C 0.137 3.863 16 C -0.570 4.570 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.246 0.754 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.043 -9.244 11.925 15.089 hybrid contribution -0.010 1.052 -0.699 1.263 sum -0.053 -8.192 11.226 13.897 Atomic orbital electron populations 1.21825 0.93261 1.02420 1.02644 1.22853 0.97741 1.00621 0.94236 0.88688 1.23511 1.00089 0.83008 0.96350 1.89129 1.83189 1.25868 1.30953 1.23983 0.97498 0.99509 0.83816 1.22105 0.92390 0.90136 0.93325 0.88185 1.56371 1.54927 1.49602 1.27278 1.02072 0.73661 0.73127 0.72492 1.93660 1.64282 1.59271 1.77192 1.93531 1.85533 1.34820 1.84155 1.57604 1.30941 1.15644 1.79643 1.21398 0.93120 0.89994 1.00848 1.19039 0.96750 0.73478 0.97047 1.21452 1.46935 0.94577 0.94023 0.92161 1.24927 0.94936 0.95905 0.98163 1.69912 1.48571 1.00888 1.34062 0.86568 0.78813 0.77121 0.85032 1.20228 1.21168 1.19958 0.92084 0.92170 0.91522 0.92211 0.88861 0.88018 0.91458 0.75364 0.94395 0.90313 0.91428 0.95100 0.94238 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.94 37.16 0.33 -1.09 16 2 C -0.13 -1.41 3.48 -89.05 -0.31 -1.72 16 3 H 0.09 0.97 7.83 -51.93 -0.41 0.56 16 4 C 0.05 0.46 7.18 37.93 0.27 0.73 16 5 O -0.37 -4.57 11.65 -35.23 -0.41 -4.98 16 6 C 0.03 0.37 7.36 37.93 0.28 0.65 16 7 C 0.13 1.62 3.37 -66.36 -0.22 1.40 16 8 H 0.10 1.26 6.58 -51.93 -0.34 0.92 16 9 N -1.12 -16.08 5.52 -3.56 -0.02 -16.10 16 10 S 2.78 53.37 5.97 -107.50 -0.64 52.72 16 11 O -0.96 -22.69 17.31 -57.17 -0.99 -23.68 16 12 O -1.00 -19.87 16.46 -57.17 -0.94 -20.81 16 13 N -1.00 -19.91 3.23 -123.05 -0.40 -20.30 16 14 C 0.09 1.53 10.30 59.85 0.62 2.15 16 15 C 0.26 6.29 5.08 -5.19 -0.03 6.27 16 16 C -0.53 -14.70 9.38 -34.44 -0.32 -15.03 16 17 H 0.06 1.67 7.82 -52.48 -0.41 1.26 16 18 C 0.06 1.77 5.45 -17.82 -0.10 1.68 16 19 N -0.90 -25.86 13.29 55.43 0.74 -25.13 16 20 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 31 H 0.41 5.15 8.73 -34.47 -0.30 4.85 16 32 H 0.04 0.51 7.51 -51.93 -0.39 0.12 16 33 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.07 1.06 7.00 -51.93 -0.36 0.70 16 35 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 36 H 0.04 1.02 7.75 -51.93 -0.40 0.62 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 319.18 15.07 4.81 4.81 Total: -1.00 -33.31 319.18 -7.89 -41.20 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.53 Total: 0.60 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 0.52 Total: -4.97 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.32 Total: -61.53 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -2.34 Total: -49.47 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 53.37 SS G_CDS: -0.64 Total: 52.72 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.31 -7.89 -41.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921494377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.992 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds