Wall clock time and date at job start Tue Mar 31 2020 00:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.45512 * 2 1 4 4 C 1.54475 * 110.51171 * 122.75306 * 2 1 3 5 5 O 1.44424 * 104.80330 * 94.66528 * 4 2 1 6 6 C 1.44417 * 105.27586 * 40.51088 * 5 4 2 7 7 C 1.54479 * 104.80701 * 319.48870 * 6 5 4 8 8 H 1.08998 * 110.51380 * 265.33413 * 7 6 5 9 9 N 1.46498 * 110.62886 * 142.67568 * 7 6 5 10 10 S 1.65607 * 119.99746 * 100.61883 * 9 7 6 11 11 O 1.42098 * 106.40333 * 176.31286 * 10 9 7 12 12 O 1.42102 * 106.40001 * 309.23780 * 10 9 7 13 13 N 1.65602 * 107.21700 * 62.77583 * 10 9 7 14 14 C 1.46506 * 119.99884 * 264.61459 * 13 10 9 15 15 C 1.46502 * 120.00208 * 84.61515 * 13 10 9 16 16 C 1.50701 * 109.46904 * 94.87105 * 15 13 10 17 17 H 1.08005 * 120.00295 * 4.74759 * 16 15 13 18 18 C 1.37877 * 120.00025 * 184.75005 * 16 15 13 19 19 N 1.31515 * 120.00007 * 5.29172 * 18 16 15 20 20 Si 1.86800 * 119.99839 * 185.29316 * 18 16 15 21 21 H 1.48501 * 109.47437 * 64.99688 * 20 18 16 22 22 H 1.48499 * 109.47134 * 184.99820 * 20 18 16 23 23 H 1.48504 * 109.47380 * 304.99481 * 20 18 16 24 24 H 1.09001 * 109.47291 * 177.81258 * 1 2 3 25 25 H 1.08998 * 109.46787 * 297.81911 * 1 2 3 26 26 H 1.09000 * 109.46922 * 57.81214 * 1 2 3 27 27 H 1.09000 * 110.37413 * 213.49882 * 4 2 1 28 28 H 1.09007 * 110.37065 * 335.83204 * 4 2 1 29 29 H 1.08998 * 110.37641 * 200.65290 * 6 5 4 30 30 H 1.09002 * 110.46573 * 78.36430 * 6 5 4 31 31 H 0.96996 * 120.00673 * 280.61515 * 9 7 6 32 32 H 1.09001 * 109.46867 * 90.00587 * 14 13 10 33 33 H 1.09000 * 109.46808 * 210.00086 * 14 13 10 34 34 H 1.09000 * 109.47273 * 330.00674 * 14 13 10 35 35 H 1.08997 * 109.47400 * 214.86902 * 15 13 10 36 36 H 1.08992 * 109.47002 * 334.87717 * 15 13 10 37 37 H 0.97002 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7828 1.2168 5 8 2.3070 -2.1186 0.7211 6 6 2.8757 -1.9414 -0.5946 7 6 2.0714 -0.7798 -1.2191 8 1 1.2490 -1.1653 -1.8218 9 7 2.9432 0.0747 -2.0291 10 16 2.9586 -0.0841 -3.6775 11 8 3.8256 0.9283 -4.1700 12 8 3.1469 -1.4668 -3.9456 13 7 1.4409 0.2952 -4.2207 14 6 0.4615 -0.7679 -4.4596 15 6 1.0776 1.6937 -4.4623 16 6 1.2927 2.0245 -5.9168 17 1 1.5894 1.2500 -6.6086 18 6 1.1109 3.3158 -6.3643 19 7 0.8519 4.2787 -5.5067 20 14 1.2325 3.6978 -8.1888 21 1 0.1340 3.0093 -8.9130 22 1 1.1194 5.1639 -8.3962 23 1 2.5407 3.2240 -8.7077 24 1 -0.3634 -1.0269 -0.0392 25 1 -0.3633 0.4796 0.9089 26 1 -0.3633 0.5474 -0.8697 27 1 3.0024 -0.3392 1.5697 28 1 1.3311 -0.7999 2.0168 29 1 2.7535 -2.8487 -1.1862 30 1 3.9304 -1.6763 -0.5213 31 1 3.5113 0.7334 -1.6000 32 1 -0.1082 -0.9486 -3.5480 33 1 -0.2163 -0.4647 -5.2576 34 1 0.9803 -1.6812 -4.7508 35 1 0.0291 1.8462 -4.2063 36 1 1.7001 2.3425 -3.8463 37 1 0.7243 5.1872 -5.8216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921494377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:00 Heat of formation + Delta-G solvation = -149.617169 kcal Electronic energy + Delta-G solvation = -21136.636806 eV Core-core repulsion = 17846.715523 eV Total energy + Delta-G solvation = -3289.921283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.71737 -38.27169 -37.23284 -36.86468 -35.96548 -34.50089 -33.39719 -29.68298 -29.26216 -27.15489 -26.77904 -24.22264 -23.55207 -21.68347 -20.44946 -19.01927 -18.41097 -18.30494 -17.84047 -16.96635 -16.83971 -16.32112 -16.05442 -15.75500 -15.06123 -14.95035 -14.53480 -14.13058 -13.97549 -13.83731 -13.51503 -13.30918 -13.21117 -13.13249 -13.03323 -12.97012 -12.93245 -12.49103 -12.43496 -12.28648 -11.96827 -11.87538 -11.76507 -11.73223 -10.87355 -10.58306 -10.39850 -9.80184 -8.20346 -6.31018 -0.34649 1.40206 1.42796 1.50239 1.96458 2.40817 2.59934 3.04003 3.10767 3.41252 3.47234 3.77227 3.87504 4.03765 4.10034 4.22023 4.32431 4.55997 4.69258 4.76533 4.79903 4.82762 4.84822 4.92839 5.03252 5.07746 5.17458 5.20524 5.36597 5.45592 5.68773 5.76076 5.87373 6.07943 6.13758 6.76476 7.37462 8.87043 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028531 B = 0.005443 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.148567 B = 5142.990174 C = 5521.090504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 H 0.098 0.902 4 C 0.047 3.953 5 O -0.385 6.385 6 C 0.031 3.969 7 C 0.119 3.881 8 H 0.100 0.900 9 N -1.109 6.109 10 S 2.796 3.204 11 O -1.009 7.009 12 O -1.005 7.005 13 N -1.001 6.001 14 C 0.086 3.914 15 C 0.274 3.726 16 C -0.551 4.551 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.923 5.923 20 Si 0.955 3.045 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.423 0.577 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.019 0.981 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.132 -9.410 13.214 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 H 0.117 0.883 4 C -0.030 4.030 5 O -0.304 6.304 6 C -0.048 4.048 7 C 0.011 3.989 8 H 0.118 0.882 9 N -0.871 5.871 10 S 2.804 3.196 11 O -0.993 6.993 12 O -0.988 6.988 13 N -0.843 5.843 14 C -0.060 4.060 15 C 0.150 3.850 16 C -0.590 4.590 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.780 3.220 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.204 1.204 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.131 0.869 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.259 0.741 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.605 -9.839 12.709 16.084 hybrid contribution 0.160 1.165 -0.845 1.448 sum -0.446 -8.674 11.864 14.704 Atomic orbital electron populations 1.21827 0.92679 1.02645 1.02901 1.22865 0.98188 1.00631 0.93513 0.88340 1.23681 1.01283 0.81774 0.96240 1.89122 1.83237 1.27299 1.30731 1.23949 0.97687 0.99138 0.84027 1.22366 0.92203 0.90453 0.93835 0.88156 1.55891 1.55441 1.50220 1.25537 1.01305 0.72814 0.72193 0.73272 1.93591 1.65924 1.60795 1.79017 1.93516 1.85496 1.34882 1.84900 1.57466 1.31714 1.14668 1.80483 1.21630 0.92778 0.89038 1.02527 1.18606 0.95988 0.75406 0.94974 1.21824 1.46850 0.94692 0.95683 0.92998 1.25719 0.94695 0.95884 1.02322 1.70000 1.49306 1.01214 1.35770 0.85663 0.78808 0.77368 0.80205 1.18783 1.20281 1.20376 0.91722 0.90424 0.92945 0.90987 0.86939 0.88138 0.90998 0.74111 0.90969 0.90868 0.90649 0.95296 0.96283 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.94 71.98 0.64 -1.86 16 2 C -0.13 -2.48 3.48 -9.78 -0.03 -2.52 16 3 H 0.10 1.80 7.83 -2.39 -0.02 1.79 16 4 C 0.05 0.78 7.18 72.48 0.52 1.30 16 5 O -0.39 -8.57 11.65 -148.98 -1.74 -10.30 16 6 C 0.03 0.69 7.36 72.48 0.53 1.23 16 7 C 0.12 2.79 3.37 46.01 0.16 2.95 16 8 H 0.10 2.34 6.58 -2.39 -0.02 2.33 16 9 N -1.11 -30.73 5.52 -165.17 -0.91 -31.64 16 10 S 2.80 106.88 5.97 -56.49 -0.34 106.54 16 11 O -1.01 -48.50 17.31 -128.00 -2.22 -50.72 16 12 O -1.00 -39.31 16.46 -128.00 -2.11 -41.41 16 13 N -1.00 -39.78 3.23 -543.22 -1.75 -41.53 16 14 C 0.09 2.72 10.30 127.77 1.32 4.04 16 15 C 0.27 13.45 5.08 85.63 0.44 13.89 16 16 C -0.55 -30.83 9.38 25.60 0.24 -30.59 16 17 H 0.05 2.91 7.82 -2.91 -0.02 2.89 16 18 C 0.01 0.76 5.45 84.65 0.46 1.22 16 19 N -0.92 -53.60 13.29 21.45 0.28 -53.31 16 20 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.11 1.46 7.87 -2.38 -0.02 1.44 16 29 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 30 H 0.07 1.54 8.06 -2.39 -0.02 1.52 16 31 H 0.42 10.19 8.73 -96.75 -0.84 9.34 16 32 H 0.07 1.79 7.51 -2.39 -0.02 1.77 16 33 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 34 H 0.07 2.27 7.00 -2.39 -0.02 2.26 16 35 H 0.03 1.42 8.11 -2.39 -0.02 1.40 16 36 H 0.02 1.01 7.75 -2.39 -0.02 0.99 16 37 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -70.58 319.18 -2.26 -72.83 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.22 Total: 13.62 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 4.27 Total: -10.35 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -2.38 Total: -126.49 kcal Atomic # 8 Polarization: -96.37 SS G_CDS: -6.06 Total: -102.43 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 106.88 SS G_CDS: -0.34 Total: 106.54 kcal Total: -70.58 -2.26 -72.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921494377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.783 kcal (2) G-P(sol) polarization free energy of solvation -70.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds