Wall clock time and date at job start Tue Mar 31 2020 00:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 110.45700 * 2 1 4 4 C 1.54480 * 110.62659 * 237.31482 * 2 1 3 5 5 O 1.44430 * 104.80223 * 265.27377 * 4 2 1 6 6 C 1.44643 * 105.37106 * 319.56724 * 5 4 2 7 7 C 1.54485 * 104.69335 * 40.34301 * 6 5 4 8 8 H 1.08999 * 110.50797 * 94.90508 * 7 6 5 9 9 N 1.46496 * 110.51055 * 217.47204 * 7 6 5 10 10 S 1.65597 * 120.00491 * 261.69997 * 9 7 6 11 11 O 1.42103 * 106.39905 * 311.45803 * 10 9 7 12 12 O 1.42100 * 106.40688 * 178.53818 * 10 9 7 13 13 N 1.65601 * 107.21916 * 64.99863 * 10 9 7 14 14 C 1.46500 * 119.99925 * 270.00550 * 13 10 9 15 15 C 1.46495 * 120.00133 * 90.00411 * 13 10 9 16 16 C 1.50702 * 109.47574 * 94.99753 * 15 13 10 17 17 H 1.08002 * 119.99441 * 0.02562 * 16 15 13 18 18 C 1.37871 * 120.00075 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00481 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99886 * 179.73007 * 18 16 15 21 21 H 1.48502 * 109.46964 * 270.27509 * 20 18 16 22 22 H 1.48505 * 109.47036 * 30.26897 * 20 18 16 23 23 H 1.48490 * 109.47395 * 150.27411 * 20 18 16 24 24 H 1.08995 * 109.46699 * 297.39860 * 1 2 3 25 25 H 1.09000 * 109.46710 * 57.39258 * 1 2 3 26 26 H 1.08997 * 109.47087 * 177.39748 * 1 2 3 27 27 H 1.09000 * 110.37188 * 24.10980 * 4 2 1 28 28 H 1.09002 * 110.37215 * 146.44745 * 4 2 1 29 29 H 1.09002 * 110.33783 * 281.59241 * 6 5 4 30 30 H 1.08992 * 110.50723 * 159.18387 * 6 5 4 31 31 H 0.97004 * 119.99913 * 81.69769 * 9 7 6 32 32 H 1.09008 * 109.46955 * 269.99845 * 14 13 10 33 33 H 1.08999 * 109.47167 * 29.99609 * 14 13 10 34 34 H 1.08994 * 109.47376 * 149.99974 * 14 13 10 35 35 H 1.09009 * 109.47230 * 335.00094 * 15 13 10 36 36 H 1.08998 * 109.47557 * 215.00585 * 15 13 10 37 37 H 0.97005 * 119.99656 * 359.72741 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0742 -0.7807 -1.2168 5 8 2.3119 -2.1166 -0.7219 6 6 2.8780 -1.9415 0.5976 7 6 2.0714 -0.7797 1.2190 8 1 1.2491 -1.1652 1.8217 9 7 2.9432 0.0747 2.0291 10 16 2.9999 -0.1213 3.6724 11 8 1.6512 -0.1640 4.1182 12 8 3.9489 0.8192 4.1563 13 7 3.6370 -1.6215 3.9655 14 6 2.7526 -2.7841 4.0757 15 6 5.0851 -1.7859 4.1145 16 6 5.4480 -1.7419 5.5765 17 1 4.6769 -1.6054 6.3203 18 6 6.7642 -1.8757 5.9644 19 7 7.7031 -2.0424 5.0587 20 14 7.2149 -1.8135 7.7762 21 1 7.4952 -0.4090 8.1686 22 1 6.0853 -2.3375 8.5855 23 1 8.4221 -2.6445 8.0148 24 1 -0.3632 0.4729 0.9124 25 1 -0.3633 0.5538 -0.8657 26 1 -0.3633 -1.0266 -0.0467 27 1 1.3350 -0.7986 -2.0177 28 1 3.0049 -0.3352 -1.5682 29 1 3.9325 -1.6752 0.5251 30 1 2.7546 -2.8484 1.1895 31 1 3.4872 0.7553 1.6028 32 1 2.4475 -2.9113 5.1145 33 1 1.8705 -2.6299 3.4543 34 1 3.2816 -3.6762 3.7406 35 1 5.5983 -0.9809 3.5884 36 1 5.3870 -2.7451 3.6939 37 1 7.4690 -2.0751 4.1179 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921494378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:03 Heat of formation + Delta-G solvation = -126.332959 kcal Electronic energy + Delta-G solvation = -21169.621407 eV Core-core repulsion = 17880.709803 eV Total energy + Delta-G solvation = -3288.911604 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.87198 -36.74325 -35.74309 -35.30505 -34.96856 -32.69587 -32.55865 -28.38227 -27.51174 -26.47154 -24.88788 -22.68506 -22.51712 -20.88171 -19.19107 -17.67564 -17.11638 -16.71180 -16.68352 -15.98173 -15.28911 -15.24270 -14.85800 -14.05000 -13.73777 -13.65170 -13.36987 -12.85990 -12.75985 -12.63220 -12.49553 -12.25141 -12.03364 -11.73539 -11.58231 -11.32720 -11.29653 -11.13317 -11.08662 -11.01381 -10.67169 -10.54103 -10.10818 -10.02537 -9.43659 -9.37256 -8.40807 -8.01299 -6.42216 -4.14000 1.05490 3.28967 3.45185 3.48310 3.63546 3.77716 4.05136 4.20390 4.52500 4.53622 4.63447 4.77903 4.93729 5.02865 5.19390 5.26028 5.33158 5.40578 5.44260 5.49970 5.59739 5.69922 5.75455 5.89384 5.91036 6.03473 6.18157 6.35969 6.57678 6.80551 6.96372 7.14259 7.39284 7.97319 8.41715 8.77020 9.54855 10.95938 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030189 B = 0.005357 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.258737 B = 5225.919022 C = 5581.429152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.048 3.952 5 O -0.372 6.372 6 C 0.027 3.973 7 C 0.122 3.878 8 H 0.106 0.894 9 N -1.125 6.125 10 S 2.781 3.219 11 O -0.993 6.993 12 O -0.961 6.961 13 N -0.992 5.992 14 C 0.106 3.894 15 C 0.248 3.752 16 C -0.608 4.608 17 H 0.055 0.945 18 C 0.021 3.979 19 N -0.910 5.910 20 Si 1.072 2.928 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.284 1.284 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.413 0.587 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.258 1.648 -12.137 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 H 0.111 0.889 4 C -0.029 4.029 5 O -0.290 6.290 6 C -0.052 4.052 7 C 0.013 3.987 8 H 0.123 0.877 9 N -0.883 5.883 10 S 2.788 3.212 11 O -0.976 6.976 12 O -0.945 6.945 13 N -0.835 5.835 14 C -0.041 4.041 15 C 0.126 3.874 16 C -0.648 4.648 17 H 0.073 0.927 18 C -0.183 4.183 19 N -0.546 5.546 20 Si 0.900 3.100 21 H -0.212 1.212 22 H -0.214 1.214 23 H -0.209 1.209 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.247 0.753 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.427 1.837 -10.442 15.588 hybrid contribution -0.808 0.321 -1.409 1.655 sum -12.235 2.158 -11.851 17.169 Atomic orbital electron populations 1.21828 0.93325 1.02617 1.02408 1.22805 0.97587 1.00471 0.94302 0.88938 1.23499 1.00124 0.83119 0.96179 1.89167 1.83297 1.25711 1.30789 1.24112 0.97920 0.99234 0.83897 1.22216 0.92557 0.90445 0.93446 0.87655 1.56390 1.56272 1.47358 1.28254 1.02024 0.73085 0.73453 0.72623 1.93546 1.37196 1.87124 1.79775 1.93652 1.62586 1.60788 1.77447 1.57486 1.16830 1.23645 1.85514 1.21270 0.92116 0.89184 1.01519 1.19130 0.73254 0.96882 0.98141 1.22319 0.95763 1.54651 0.92019 0.92702 1.25809 0.92339 0.93415 1.06742 1.70803 1.35225 1.46191 1.02380 0.83500 0.75613 0.77014 0.73856 1.21226 1.21407 1.20929 0.91790 0.92136 0.91851 0.88820 0.92088 0.90960 0.88214 0.75326 0.92790 0.93014 0.91367 0.95561 0.95661 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.95 37.16 0.33 -0.92 16 2 C -0.13 -1.27 3.47 -89.05 -0.31 -1.57 16 3 H 0.09 0.80 7.80 -51.93 -0.41 0.40 16 4 C 0.05 0.45 7.19 37.93 0.27 0.72 16 5 O -0.37 -4.56 11.65 -35.23 -0.41 -4.97 16 6 C 0.03 0.33 7.37 37.94 0.28 0.61 16 7 C 0.12 1.48 3.45 -66.36 -0.23 1.25 16 8 H 0.11 1.31 6.71 -51.93 -0.35 0.96 16 9 N -1.12 -15.63 5.54 -3.56 -0.02 -15.65 16 10 S 2.78 53.25 6.04 -107.50 -0.65 52.60 16 11 O -0.99 -20.14 16.59 -57.17 -0.95 -21.08 16 12 O -0.96 -22.55 17.11 -57.17 -0.98 -23.53 16 13 N -0.99 -19.85 3.23 -123.05 -0.40 -20.24 16 14 C 0.11 1.75 10.27 59.85 0.61 2.37 16 15 C 0.25 6.02 4.43 -5.20 -0.02 6.00 16 16 C -0.61 -17.11 9.38 -34.44 -0.32 -17.43 16 17 H 0.05 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 19 N -0.91 -27.08 13.65 55.43 0.76 -26.32 16 20 Si 1.07 25.58 29.90 -169.99 -5.08 20.50 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.71 7.87 -51.93 -0.41 0.30 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 30 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 31 H 0.41 4.94 8.68 -34.46 -0.30 4.64 16 32 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.05 0.70 7.34 -51.93 -0.38 0.32 16 34 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 35 H 0.03 0.67 7.48 -51.92 -0.39 0.28 16 36 H 0.03 0.61 7.83 -51.93 -0.41 0.20 16 37 H 0.27 7.75 7.22 -40.82 -0.29 7.46 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -34.60 318.54 -7.91 -42.52 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.50 Total: -0.16 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 0.52 Total: -8.46 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.34 Total: -62.22 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -2.34 Total: -49.58 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.50 kcal Atomic # 16 Polarization: 53.25 SS G_CDS: -0.65 Total: 52.60 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.60 -7.91 -42.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921494378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.817 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds