Wall clock time and date at job start Tue Mar 31 2020 00:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 110.45700 * 2 1 4 4 C 1.54480 * 110.62659 * 237.31482 * 2 1 3 5 5 O 1.44430 * 104.80223 * 265.27377 * 4 2 1 6 6 C 1.44643 * 105.37106 * 319.56724 * 5 4 2 7 7 C 1.54485 * 104.69335 * 40.34301 * 6 5 4 8 8 H 1.08999 * 110.50797 * 94.90508 * 7 6 5 9 9 N 1.46496 * 110.51055 * 217.47204 * 7 6 5 10 10 S 1.65597 * 120.00491 * 261.69997 * 9 7 6 11 11 O 1.42103 * 106.39905 * 311.45803 * 10 9 7 12 12 O 1.42100 * 106.40688 * 178.53818 * 10 9 7 13 13 N 1.65601 * 107.21916 * 64.99863 * 10 9 7 14 14 C 1.46500 * 119.99925 * 270.00550 * 13 10 9 15 15 C 1.46495 * 120.00133 * 90.00411 * 13 10 9 16 16 C 1.50702 * 109.47574 * 94.99753 * 15 13 10 17 17 H 1.08002 * 119.99441 * 0.02562 * 16 15 13 18 18 C 1.37871 * 120.00075 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00481 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99886 * 179.73007 * 18 16 15 21 21 H 1.48502 * 109.46964 * 270.27509 * 20 18 16 22 22 H 1.48505 * 109.47036 * 30.26897 * 20 18 16 23 23 H 1.48490 * 109.47395 * 150.27411 * 20 18 16 24 24 H 1.08995 * 109.46699 * 297.39860 * 1 2 3 25 25 H 1.09000 * 109.46710 * 57.39258 * 1 2 3 26 26 H 1.08997 * 109.47087 * 177.39748 * 1 2 3 27 27 H 1.09000 * 110.37188 * 24.10980 * 4 2 1 28 28 H 1.09002 * 110.37215 * 146.44745 * 4 2 1 29 29 H 1.09002 * 110.33783 * 281.59241 * 6 5 4 30 30 H 1.08992 * 110.50723 * 159.18387 * 6 5 4 31 31 H 0.97004 * 119.99913 * 81.69769 * 9 7 6 32 32 H 1.09008 * 109.46955 * 269.99845 * 14 13 10 33 33 H 1.08999 * 109.47167 * 29.99609 * 14 13 10 34 34 H 1.08994 * 109.47376 * 149.99974 * 14 13 10 35 35 H 1.09009 * 109.47230 * 335.00094 * 15 13 10 36 36 H 1.08998 * 109.47557 * 215.00585 * 15 13 10 37 37 H 0.97005 * 119.99656 * 359.72741 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0742 -0.7807 -1.2168 5 8 2.3119 -2.1166 -0.7219 6 6 2.8780 -1.9415 0.5976 7 6 2.0714 -0.7797 1.2190 8 1 1.2491 -1.1652 1.8217 9 7 2.9432 0.0747 2.0291 10 16 2.9999 -0.1213 3.6724 11 8 1.6512 -0.1640 4.1182 12 8 3.9489 0.8192 4.1563 13 7 3.6370 -1.6215 3.9655 14 6 2.7526 -2.7841 4.0757 15 6 5.0851 -1.7859 4.1145 16 6 5.4480 -1.7419 5.5765 17 1 4.6769 -1.6054 6.3203 18 6 6.7642 -1.8757 5.9644 19 7 7.7031 -2.0424 5.0587 20 14 7.2149 -1.8135 7.7762 21 1 7.4952 -0.4090 8.1686 22 1 6.0853 -2.3375 8.5855 23 1 8.4221 -2.6445 8.0148 24 1 -0.3632 0.4729 0.9124 25 1 -0.3633 0.5538 -0.8657 26 1 -0.3633 -1.0266 -0.0467 27 1 1.3350 -0.7986 -2.0177 28 1 3.0049 -0.3352 -1.5682 29 1 3.9325 -1.6752 0.5251 30 1 2.7546 -2.8484 1.1895 31 1 3.4872 0.7553 1.6028 32 1 2.4475 -2.9113 5.1145 33 1 1.8705 -2.6299 3.4543 34 1 3.2816 -3.6762 3.7406 35 1 5.5983 -0.9809 3.5884 36 1 5.3870 -2.7451 3.6939 37 1 7.4690 -2.0751 4.1179 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921494378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:02 Heat of formation + Delta-G solvation = -153.990517 kcal Electronic energy + Delta-G solvation = -21170.820729 eV Core-core repulsion = 17880.709803 eV Total energy + Delta-G solvation = -3290.110926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.76081 -38.39292 -37.46205 -36.97329 -36.03103 -34.70602 -33.45846 -29.51277 -29.19573 -27.20058 -26.63683 -24.46954 -23.61563 -21.76466 -20.60534 -19.44819 -18.55367 -18.38636 -17.96345 -16.93976 -16.76968 -16.20076 -15.98444 -15.66958 -15.56232 -15.00092 -14.55084 -14.28708 -14.02762 -13.94213 -13.56864 -13.39130 -13.30296 -13.24998 -13.21272 -13.09714 -12.95583 -12.45393 -12.36065 -12.31573 -11.93644 -11.91102 -11.79995 -11.29149 -10.93102 -10.57363 -10.48155 -9.81262 -8.65973 -6.39526 -0.46903 1.52516 1.60337 1.78163 1.87563 2.47409 2.56337 2.98731 3.13466 3.28157 3.40181 3.67642 3.81881 3.87403 4.03417 4.17523 4.26804 4.49587 4.54389 4.65931 4.71293 4.76846 4.78490 4.83804 4.88302 4.98556 4.99734 5.10837 5.26830 5.32837 5.60033 5.72785 5.86151 5.99967 6.20984 6.54254 7.36051 8.72185 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030189 B = 0.005357 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.258737 B = 5225.919022 C = 5581.429152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 H 0.104 0.896 4 C 0.045 3.955 5 O -0.386 6.386 6 C 0.027 3.973 7 C 0.114 3.886 8 H 0.104 0.896 9 N -1.107 6.107 10 S 2.798 3.202 11 O -1.004 7.004 12 O -1.009 7.009 13 N -0.997 5.997 14 C 0.097 3.903 15 C 0.260 3.740 16 C -0.624 4.624 17 H 0.043 0.957 18 C -0.027 4.027 19 N -0.931 5.931 20 Si 1.111 2.889 21 H -0.280 1.280 22 H -0.272 1.272 23 H -0.275 1.275 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.424 0.576 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.012 0.988 36 H 0.027 0.973 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.359 1.621 -13.021 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 H 0.123 0.877 4 C -0.032 4.032 5 O -0.305 6.305 6 C -0.052 4.052 7 C 0.006 3.994 8 H 0.122 0.878 9 N -0.870 5.870 10 S 2.806 3.194 11 O -0.988 6.988 12 O -0.993 6.993 13 N -0.839 5.839 14 C -0.049 4.049 15 C 0.135 3.865 16 C -0.663 4.663 17 H 0.061 0.939 18 C -0.226 4.226 19 N -0.568 5.568 20 Si 0.933 3.067 21 H -0.206 1.206 22 H -0.197 1.197 23 H -0.200 1.200 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.261 0.739 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.030 0.970 36 H 0.045 0.955 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.556 1.805 -11.341 17.016 hybrid contribution -0.558 0.338 -1.246 1.406 sum -13.113 2.142 -12.588 18.303 Atomic orbital electron populations 1.21841 0.92400 1.02883 1.02989 1.22840 0.98290 1.00749 0.92888 0.87744 1.23707 1.01235 0.81809 0.96418 1.89157 1.83286 1.27430 1.30577 1.24060 0.97564 0.99263 0.84283 1.22463 0.92135 0.90703 0.94088 0.87768 1.55879 1.56760 1.47838 1.26477 1.01276 0.72140 0.72529 0.73495 1.93526 1.37360 1.87104 1.80780 1.93584 1.63948 1.62429 1.79315 1.57374 1.15377 1.24938 1.86186 1.21516 0.92847 0.88692 1.01830 1.18753 0.75603 0.96227 0.95871 1.22690 0.95665 1.54145 0.93827 0.93901 1.27121 0.92703 0.92733 1.10010 1.70905 1.35661 1.47922 1.02357 0.83015 0.76254 0.77514 0.69953 1.20572 1.19670 1.20033 0.92662 0.89988 0.91931 0.86707 0.91229 0.91593 0.88029 0.73944 0.93697 0.89845 0.89985 0.96969 0.95463 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.95 71.98 0.64 -1.45 16 2 C -0.13 -2.12 3.47 -9.78 -0.03 -2.16 16 3 H 0.10 1.51 7.80 -2.38 -0.02 1.49 16 4 C 0.04 0.72 7.19 72.49 0.52 1.24 16 5 O -0.39 -8.67 11.65 -148.98 -1.74 -10.41 16 6 C 0.03 0.62 7.37 72.49 0.53 1.15 16 7 C 0.11 2.55 3.45 46.01 0.16 2.71 16 8 H 0.10 2.39 6.71 -2.39 -0.02 2.37 16 9 N -1.11 -29.49 5.54 -165.18 -0.91 -30.40 16 10 S 2.80 106.19 6.04 -56.49 -0.34 105.85 16 11 O -1.00 -39.86 16.59 -128.00 -2.12 -41.99 16 12 O -1.01 -47.94 17.11 -128.00 -2.19 -50.13 16 13 N -1.00 -39.60 3.23 -543.23 -1.75 -41.35 16 14 C 0.10 3.09 10.27 127.77 1.31 4.41 16 15 C 0.26 12.70 4.43 85.63 0.38 13.08 16 16 C -0.62 -35.40 9.38 25.60 0.24 -35.16 16 17 H 0.04 2.48 7.81 -2.91 -0.02 2.45 16 18 C -0.03 -1.53 5.46 84.65 0.46 -1.06 16 19 N -0.93 -55.82 13.65 21.45 0.29 -55.53 16 20 Si 1.11 51.14 29.90 68.60 2.05 53.19 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.11 1.35 7.87 -2.39 -0.02 1.34 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.58 8.06 -2.39 -0.02 1.56 16 30 H 0.10 2.24 8.08 -2.39 -0.02 2.22 16 31 H 0.42 9.64 8.68 -96.74 -0.84 8.80 16 32 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.08 2.12 7.34 -2.39 -0.02 2.10 16 34 H 0.08 2.38 7.94 -2.39 -0.02 2.37 16 35 H 0.01 0.64 7.48 -2.38 -0.02 0.62 16 36 H 0.03 1.32 7.83 -2.39 -0.02 1.31 16 37 H 0.26 15.36 7.22 -92.70 -0.67 14.69 16 Total: -1.00 -73.73 318.54 -2.17 -75.90 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.33 Total: 12.13 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 4.22 Total: -17.25 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -2.37 Total: -127.28 kcal Atomic # 8 Polarization: -96.48 SS G_CDS: -6.05 Total: -102.53 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.19 kcal Atomic # 16 Polarization: 106.19 SS G_CDS: -0.34 Total: 105.85 kcal Total: -73.73 -2.17 -75.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921494378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.092 kcal (2) G-P(sol) polarization free energy of solvation -73.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds