Wall clock time and date at job start Tue Mar 31 2020 00:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00499 * 2 1 4 4 H 1.08997 * 109.46983 * 4.99823 * 3 2 1 5 5 C 1.52997 * 109.47258 * 124.99914 * 3 2 1 6 6 O 1.42897 * 109.47357 * 55.00081 * 5 3 2 7 7 N 1.46498 * 109.47001 * 244.99878 * 3 2 1 8 8 C 1.37659 * 120.00277 * 154.99626 * 7 3 2 9 9 C 1.40181 * 119.80498 * 0.02562 * 8 7 3 10 10 C 1.35806 * 120.18479 * 179.97438 * 9 8 7 11 11 C 1.41743 * 119.80507 * 0.02562 * 10 9 8 12 12 C 1.39524 * 120.18472 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99912 * 143.27672 * 12 11 10 14 14 C 1.46595 * 120.00092 * 323.28832 * 12 11 10 15 15 N 1.29492 * 119.99929 * 343.33720 * 14 12 11 16 16 Si 1.86791 * 119.99904 * 163.34110 * 14 12 11 17 17 H 1.48499 * 109.47137 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47610 * 299.99802 * 16 14 12 19 19 H 1.48505 * 109.47509 * 59.99818 * 16 14 12 20 20 C 1.41714 * 119.63383 * 0.25462 * 11 10 9 21 21 N 1.48011 * 120.09826 * 179.75025 * 20 11 10 22 22 O 1.31700 * 119.99995 * 173.63224 * 21 20 11 23 23 O 1.31693 * 120.00246 * 353.62191 * 21 20 11 24 24 C 1.35829 * 119.79946 * 359.45708 * 20 11 10 25 25 H 1.07998 * 120.00944 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.99533 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99332 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47025 * 175.00040 * 5 3 2 29 29 H 1.09002 * 109.47259 * 294.99974 * 5 3 2 30 30 H 0.96697 * 114.00035 * 180.02562 * 6 5 3 31 31 H 0.97000 * 120.00145 * 334.99909 * 7 3 2 32 32 H 1.07998 * 119.91147 * 359.97407 * 9 8 7 33 33 H 1.08008 * 120.09340 * 179.97438 * 10 9 8 34 34 H 0.96998 * 119.99565 * 354.54141 * 15 14 12 35 35 H 1.08005 * 119.90114 * 180.25617 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3587 2.1316 0.0895 5 6 3.0351 1.3330 1.1816 6 8 3.8841 0.1848 1.1275 7 7 2.8133 1.4360 -1.2518 8 6 3.1476 2.6841 -1.7266 9 6 2.7692 3.8271 -1.0086 10 6 3.0954 5.0621 -1.4696 11 6 3.8203 5.1933 -2.6806 12 6 4.1592 6.4583 -3.1618 13 1 5.1084 6.6126 -3.6532 14 6 3.2269 7.5780 -3.0002 15 7 1.9844 7.3500 -2.7156 16 14 3.8313 9.3335 -3.2050 17 1 2.7016 10.2739 -2.9930 18 1 4.8985 9.6090 -2.2099 19 1 4.3741 9.5136 -4.5755 20 6 4.1937 4.0327 -3.4030 21 7 4.9459 4.1580 -4.6716 22 8 5.4007 3.0802 -5.2766 23 8 5.1601 5.3471 -5.1955 24 6 3.8644 2.8048 -2.9247 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 3.6425 2.2366 1.1313 29 1 2.4723 1.3250 2.1150 30 1 4.5269 0.1367 1.8483 31 1 3.0740 0.6432 -1.7462 32 1 2.2166 3.7253 -0.0863 33 1 2.8027 5.9418 -0.9155 34 1 1.6526 6.4390 -2.6873 35 1 4.1517 1.9190 -3.4718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169784279.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:50 Heat of formation + Delta-G solvation = 5.084094 kcal Electronic energy + Delta-G solvation = -21282.495698 eV Core-core repulsion = 17863.838814 eV Total energy + Delta-G solvation = -3418.656884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.23564 -37.82163 -36.42012 -35.51294 -34.38879 -32.63089 -32.40432 -30.50336 -29.52002 -27.96908 -25.57348 -24.27382 -22.77673 -21.64921 -20.53626 -19.67217 -18.76658 -17.53060 -16.83313 -16.56228 -15.86831 -15.34687 -15.06605 -14.76102 -14.56814 -14.18639 -14.12366 -13.66582 -13.14977 -13.07942 -12.81977 -12.34142 -12.26568 -11.87990 -11.49748 -11.44086 -11.08661 -10.70598 -10.58617 -10.32988 -10.04698 -9.84375 -9.64510 -9.42411 -9.34217 -9.03658 -8.96872 -8.50251 -7.96584 -7.04685 -4.83784 0.94162 2.07471 2.37652 2.68418 2.90285 3.01363 3.13781 3.18415 3.57593 3.97563 4.05581 4.25385 4.68016 4.74778 5.03027 5.19298 5.33898 5.49874 5.57556 5.61301 5.66780 5.80962 6.11672 6.24541 6.47443 6.51139 6.57853 6.64276 6.80674 6.95173 7.09457 7.23827 7.28609 7.55236 7.70905 7.91410 8.02956 8.12195 8.34627 8.85582 9.21704 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.005222 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.257114 B = 5360.169126 C = 6228.377039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 C 0.188 3.812 4 H 0.089 0.911 5 C 0.060 3.940 6 O -0.565 6.565 7 N -0.733 5.733 8 C 0.115 3.885 9 C -0.123 4.123 10 C -0.131 4.131 11 C 0.047 3.953 12 C -0.368 4.368 13 H 0.123 0.877 14 C 0.022 3.978 15 N -0.724 5.724 16 Si 1.081 2.919 17 H -0.267 1.267 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.064 4.064 21 N 0.038 4.962 22 O -0.366 6.366 23 O -0.289 6.289 24 C -0.118 4.118 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.374 0.626 31 H 0.396 0.604 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.309 0.691 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -4.543 12.207 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C 0.081 3.919 4 H 0.107 0.893 5 C -0.020 4.020 6 O -0.369 6.369 7 N -0.366 5.366 8 C 0.013 3.987 9 C -0.145 4.145 10 C -0.151 4.151 11 C 0.041 3.959 12 C -0.397 4.397 13 H 0.141 0.859 14 C -0.209 4.209 15 N -0.345 5.345 16 Si 0.900 3.100 17 H -0.191 1.191 18 H -0.190 1.190 19 H -0.184 1.184 20 C -0.167 4.167 21 N 0.451 4.549 22 O -0.505 6.505 23 O -0.445 6.445 24 C -0.143 4.143 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.134 0.866 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.220 0.780 31 H 0.230 0.770 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.734 -3.240 12.044 13.727 hybrid contribution 0.996 -2.030 0.005 2.262 sum -4.738 -5.270 12.049 13.979 Atomic orbital electron populations 1.23908 0.95810 1.01999 1.00137 1.22954 0.95626 0.98503 0.99845 1.19947 0.91671 0.95792 0.84450 0.89306 1.22816 0.92871 0.88609 0.97659 1.86479 1.51465 1.45309 1.53650 1.43529 1.63478 1.04840 1.24735 1.17023 1.01844 0.85191 0.94601 1.20421 1.02246 0.91934 0.99855 1.20964 1.02087 0.96498 0.95546 1.17228 0.94596 0.91865 0.92172 1.23112 1.03372 0.91932 1.21257 0.85947 1.29360 0.92927 1.08049 0.90550 1.69996 1.15446 1.29067 1.19969 0.83415 0.76986 0.70057 0.79548 1.19107 1.18970 1.18365 1.19311 1.14349 0.94936 0.88139 1.49576 1.01045 1.01238 1.03070 1.96056 1.62198 1.24602 1.67667 1.96035 1.67222 1.08706 1.72580 1.19385 1.02500 0.96106 0.96355 0.88240 0.88467 0.86597 0.92894 0.93650 0.78004 0.77008 0.87193 0.86062 0.87556 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 14.32 29.02 0.42 -1.38 16 2 C -0.15 -1.70 8.57 -36.02 -0.31 -2.01 16 3 C 0.19 2.39 2.41 -69.08 -0.17 2.22 16 4 H 0.09 1.10 6.07 -51.93 -0.32 0.79 16 5 C 0.06 0.69 6.73 37.16 0.25 0.94 16 6 O -0.56 -6.57 12.95 -35.23 -0.46 -7.03 16 7 N -0.73 -11.54 5.11 -53.15 -0.27 -11.81 16 8 C 0.12 2.21 6.65 -83.81 -0.56 1.66 16 9 C -0.12 -2.27 8.69 -39.72 -0.35 -2.61 16 10 C -0.13 -2.71 7.85 -39.12 -0.31 -3.02 16 11 C 0.05 1.14 5.18 -106.75 -0.55 0.59 16 12 C -0.37 -8.95 7.71 -35.73 -0.28 -9.23 16 13 H 0.12 3.15 6.04 -52.49 -0.32 2.84 16 14 C 0.02 0.47 5.25 -15.17 -0.08 0.39 16 15 N -0.72 -15.92 12.64 55.99 0.71 -15.21 16 16 Si 1.08 18.49 30.06 -169.99 -5.11 13.38 16 17 H -0.27 -4.41 7.11 56.52 0.40 -4.01 16 18 H -0.26 -4.25 7.11 56.52 0.40 -3.85 16 19 H -0.26 -4.47 7.11 56.52 0.40 -4.07 16 20 C -0.06 -1.65 6.89 -79.49 -0.55 -2.20 16 21 N 0.04 1.09 4.98 34.19 0.17 1.26 16 22 O -0.37 -10.95 19.14 -31.57 -0.60 -11.56 16 23 O -0.29 -8.59 16.31 -31.56 -0.51 -9.10 16 24 C -0.12 -2.70 9.35 -39.73 -0.37 -3.07 16 25 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 26 H 0.10 0.93 7.84 -52.48 -0.41 0.52 16 27 H 0.12 1.32 7.86 -52.49 -0.41 0.91 16 28 H 0.05 0.67 7.73 -51.93 -0.40 0.27 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.37 2.78 9.12 45.56 0.42 3.20 16 31 H 0.40 6.15 8.58 -40.82 -0.35 5.80 16 32 H 0.11 1.66 6.10 -52.49 -0.32 1.34 16 33 H 0.12 2.39 7.07 -52.48 -0.37 2.02 16 34 H 0.31 6.94 6.60 -40.82 -0.27 6.67 16 35 H 0.12 2.71 7.55 -52.48 -0.40 2.31 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -30.94 308.86 -7.06 -38.00 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -2.79 Total: 15.13 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.85 Total: -17.72 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.61 Total: -25.76 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.58 Total: -27.69 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.11 Total: 13.38 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.94 -7.06 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169784279.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.084 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds