Wall clock time and date at job start Tue Mar 31 2020 00:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00499 * 2 1 4 4 H 1.08997 * 109.46983 * 4.99823 * 3 2 1 5 5 C 1.52997 * 109.47258 * 124.99914 * 3 2 1 6 6 O 1.42897 * 109.47357 * 55.00081 * 5 3 2 7 7 N 1.46498 * 109.47001 * 244.99878 * 3 2 1 8 8 C 1.37659 * 120.00277 * 154.99626 * 7 3 2 9 9 C 1.40181 * 119.80498 * 0.02562 * 8 7 3 10 10 C 1.35806 * 120.18479 * 179.97438 * 9 8 7 11 11 C 1.41743 * 119.80507 * 0.02562 * 10 9 8 12 12 C 1.39524 * 120.18472 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99912 * 143.27672 * 12 11 10 14 14 C 1.46595 * 120.00092 * 323.28832 * 12 11 10 15 15 N 1.29492 * 119.99929 * 343.33720 * 14 12 11 16 16 Si 1.86791 * 119.99904 * 163.34110 * 14 12 11 17 17 H 1.48499 * 109.47137 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47610 * 299.99802 * 16 14 12 19 19 H 1.48505 * 109.47509 * 59.99818 * 16 14 12 20 20 C 1.41714 * 119.63383 * 0.25462 * 11 10 9 21 21 N 1.48011 * 120.09826 * 179.75025 * 20 11 10 22 22 O 1.31700 * 119.99995 * 173.63224 * 21 20 11 23 23 O 1.31693 * 120.00246 * 353.62191 * 21 20 11 24 24 C 1.35829 * 119.79946 * 359.45708 * 20 11 10 25 25 H 1.07998 * 120.00944 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.99533 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99332 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47025 * 175.00040 * 5 3 2 29 29 H 1.09002 * 109.47259 * 294.99974 * 5 3 2 30 30 H 0.96697 * 114.00035 * 180.02562 * 6 5 3 31 31 H 0.97000 * 120.00145 * 334.99909 * 7 3 2 32 32 H 1.07998 * 119.91147 * 359.97407 * 9 8 7 33 33 H 1.08008 * 120.09340 * 179.97438 * 10 9 8 34 34 H 0.96998 * 119.99565 * 354.54141 * 15 14 12 35 35 H 1.08005 * 119.90114 * 180.25617 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3587 2.1316 0.0895 5 6 3.0351 1.3330 1.1816 6 8 3.8841 0.1848 1.1275 7 7 2.8133 1.4360 -1.2518 8 6 3.1476 2.6841 -1.7266 9 6 2.7692 3.8271 -1.0086 10 6 3.0954 5.0621 -1.4696 11 6 3.8203 5.1933 -2.6806 12 6 4.1592 6.4583 -3.1618 13 1 5.1084 6.6126 -3.6532 14 6 3.2269 7.5780 -3.0002 15 7 1.9844 7.3500 -2.7156 16 14 3.8313 9.3335 -3.2050 17 1 2.7016 10.2739 -2.9930 18 1 4.8985 9.6090 -2.2099 19 1 4.3741 9.5136 -4.5755 20 6 4.1937 4.0327 -3.4030 21 7 4.9459 4.1580 -4.6716 22 8 5.4007 3.0802 -5.2766 23 8 5.1601 5.3471 -5.1955 24 6 3.8644 2.8048 -2.9247 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 3.6425 2.2366 1.1313 29 1 2.4723 1.3250 2.1150 30 1 4.5269 0.1367 1.8483 31 1 3.0740 0.6432 -1.7462 32 1 2.2166 3.7253 -0.0863 33 1 2.8027 5.9418 -0.9155 34 1 1.6526 6.4390 -2.6873 35 1 4.1517 1.9190 -3.4718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169784279.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:49 Heat of formation + Delta-G solvation = -18.093414 kcal Electronic energy + Delta-G solvation = -21283.500751 eV Core-core repulsion = 17863.838814 eV Total energy + Delta-G solvation = -3419.661936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86594 -39.14167 -37.97415 -36.96598 -35.79156 -34.23520 -33.95111 -32.21586 -31.06311 -29.29582 -27.29267 -26.07816 -23.90697 -23.36896 -22.02983 -20.81598 -20.57824 -18.71492 -18.26468 -18.07577 -17.23716 -17.06970 -16.43384 -16.34634 -15.88407 -15.69796 -15.42096 -15.18666 -14.66616 -14.55038 -14.11520 -13.76866 -13.61509 -13.20226 -13.02102 -12.77147 -12.37512 -12.29022 -11.88608 -11.81831 -11.46103 -11.23680 -11.07727 -11.04100 -10.94411 -10.80128 -10.44753 -10.29415 -9.90197 -8.69474 -6.79243 -1.06760 0.63094 0.87977 1.21183 1.45730 1.51953 1.55615 1.83671 2.09614 2.28166 2.72365 2.91337 3.42024 3.80837 3.84909 3.98279 4.18157 4.25080 4.34244 4.47372 4.53443 4.63774 4.69254 4.74439 4.87973 4.99193 5.04956 5.12622 5.22403 5.34192 5.58044 5.68919 5.76204 5.82615 5.93339 6.25176 6.51857 6.77933 6.91763 7.05405 7.24575 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.005222 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.257114 B = 5360.169126 C = 6228.377039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.170 4.170 3 C 0.175 3.825 4 H 0.107 0.893 5 C 0.061 3.939 6 O -0.584 6.584 7 N -0.717 5.717 8 C 0.193 3.807 9 C -0.120 4.120 10 C -0.099 4.099 11 C -0.010 4.010 12 C -0.296 4.296 13 H 0.104 0.896 14 C -0.006 4.006 15 N -0.688 5.688 16 Si 1.122 2.878 17 H -0.243 1.243 18 H -0.240 1.240 19 H -0.271 1.271 20 C -0.030 4.030 21 N 0.018 4.982 22 O -0.494 6.494 23 O -0.414 6.414 24 C -0.205 4.205 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.392 0.608 31 H 0.398 0.602 32 H 0.166 0.834 33 H 0.148 0.852 34 H 0.309 0.691 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 -2.678 18.135 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.188 4.188 3 C 0.071 3.929 4 H 0.124 0.876 5 C -0.018 4.018 6 O -0.392 6.392 7 N -0.347 5.347 8 C 0.084 3.916 9 C -0.141 4.141 10 C -0.119 4.119 11 C -0.016 4.016 12 C -0.328 4.328 13 H 0.122 0.878 14 C -0.235 4.235 15 N -0.308 5.308 16 Si 0.934 3.066 17 H -0.166 1.166 18 H -0.163 1.163 19 H -0.196 1.196 20 C -0.145 4.145 21 N 0.382 4.618 22 O -0.601 6.601 23 O -0.535 6.535 24 C -0.232 4.232 25 H 0.133 0.867 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.241 0.759 31 H 0.233 0.767 32 H 0.183 0.817 33 H 0.166 0.834 34 H 0.124 0.876 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.568 -1.470 17.712 20.185 hybrid contribution 1.576 -2.411 -0.937 3.029 sum -7.992 -3.880 16.775 18.982 Atomic orbital electron populations 1.24155 0.95323 1.03295 0.97178 1.22794 0.96031 0.97554 1.02462 1.20390 0.92149 0.97448 0.82898 0.87558 1.22781 0.92676 0.88187 0.98123 1.86441 1.52235 1.45417 1.55097 1.44030 1.61384 1.03741 1.25561 1.17310 0.95685 0.87135 0.91430 1.20903 1.01707 0.90156 1.01302 1.21234 0.98621 0.98603 0.93418 1.17740 0.97840 0.91348 0.94624 1.23879 1.01927 0.93148 1.13843 0.87788 1.30803 0.92164 1.10307 0.90220 1.70068 1.15051 1.29210 1.16478 0.82980 0.78048 0.65891 0.79674 1.16615 1.16315 1.19557 1.19894 1.10886 0.96527 0.87185 1.49381 1.06838 1.00128 1.05481 1.95914 1.68065 1.25406 1.70684 1.95864 1.72508 1.09517 1.75596 1.19253 1.09340 0.94847 0.99809 0.86705 0.87480 0.87100 0.93676 0.90449 0.75861 0.76749 0.81666 0.83414 0.87580 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 14.32 67.79 0.97 -1.44 16 2 C -0.17 -3.10 8.57 25.65 0.22 -2.88 16 3 C 0.18 3.55 2.41 44.24 0.11 3.66 16 4 H 0.11 1.84 6.07 -2.39 -0.01 1.83 16 5 C 0.06 1.09 6.73 71.98 0.48 1.57 16 6 O -0.58 -11.48 12.95 -148.98 -1.93 -13.41 16 7 N -0.72 -20.37 5.11 -322.07 -1.65 -22.02 16 8 C 0.19 6.94 6.65 39.16 0.26 7.20 16 9 C -0.12 -3.75 8.69 22.18 0.19 -3.56 16 10 C -0.10 -3.63 7.85 22.57 0.18 -3.45 16 11 C -0.01 -0.48 5.18 -21.24 -0.11 -0.59 16 12 C -0.30 -14.27 7.71 24.76 0.19 -14.08 16 13 H 0.10 5.59 6.04 -2.91 -0.02 5.58 16 14 C -0.01 -0.22 5.25 87.22 0.46 0.24 16 15 N -0.69 -26.84 12.64 23.22 0.29 -26.55 16 16 Si 1.12 33.36 30.06 68.60 2.06 35.42 16 17 H -0.24 -6.48 7.11 99.48 0.71 -5.78 16 18 H -0.24 -6.32 7.11 99.48 0.71 -5.61 16 19 H -0.27 -8.69 7.11 99.48 0.71 -7.98 16 20 C -0.03 -1.67 6.89 36.68 0.25 -1.42 16 21 N 0.02 1.21 4.98 -45.75 -0.23 0.98 16 22 O -0.49 -34.92 19.14 3.51 0.07 -34.85 16 23 O -0.41 -28.13 16.31 3.53 0.06 -28.08 16 24 C -0.20 -9.88 9.35 22.17 0.21 -9.67 16 25 H 0.11 1.39 8.06 -2.91 -0.02 1.36 16 26 H 0.11 1.41 7.84 -2.91 -0.02 1.39 16 27 H 0.11 2.18 7.86 -2.91 -0.02 2.15 16 28 H 0.04 0.88 7.73 -2.39 -0.02 0.86 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.39 4.46 9.12 -74.06 -0.68 3.79 16 31 H 0.40 11.74 8.58 -92.71 -0.80 10.94 16 32 H 0.17 3.53 6.10 -2.91 -0.02 3.52 16 33 H 0.15 4.74 7.07 -2.91 -0.02 4.72 16 34 H 0.31 12.32 6.60 -92.71 -0.61 11.71 16 35 H 0.10 5.09 7.55 -2.91 -0.02 5.07 16 Total: -1.00 -80.37 308.86 1.93 -78.45 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.16 Total: 34.47 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 3.41 Total: -24.41 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -1.58 Total: -47.59 kcal Atomic # 8 Polarization: -74.53 SS G_CDS: -1.80 Total: -76.33 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 2.06 Total: 35.42 kcal Total: -80.37 1.93 -78.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169784279.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.353 kcal (2) G-P(sol) polarization free energy of solvation -80.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds