Wall clock time and date at job start Tue Mar 31 2020 00:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 120.00137 * 2 1 4 4 H 1.08996 * 109.46843 * 4.99932 * 3 2 1 5 5 C 1.52997 * 109.47119 * 124.99517 * 3 2 1 6 6 O 1.42901 * 109.47102 * 55.00309 * 5 3 2 7 7 N 1.46503 * 109.46744 * 244.99801 * 3 2 1 8 8 C 1.39673 * 119.99430 * 155.00382 * 7 3 2 9 9 C 1.38166 * 119.99656 * 6.54853 * 8 7 3 10 10 C 1.41127 * 119.51178 * 180.02562 * 9 8 7 11 11 C 1.40355 * 120.25877 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99374 * 332.23814 * 11 10 9 13 13 C 1.46524 * 120.00371 * 152.23672 * 11 10 9 14 14 N 1.29515 * 119.99981 * 166.66896 * 13 11 10 15 15 Si 1.86804 * 119.99828 * 346.67151 * 13 11 10 16 16 H 1.48491 * 109.47043 * 92.92100 * 15 13 11 17 17 H 1.48500 * 109.46821 * 212.92147 * 15 13 11 18 18 H 1.48501 * 109.46984 * 332.92083 * 15 13 11 19 19 C 1.41339 * 119.48957 * 0.02562 * 10 9 8 20 20 C 1.36490 * 119.96635 * 0.02562 * 19 10 9 21 21 C 1.38668 * 120.49593 * 359.97438 * 20 19 10 22 22 N 1.48017 * 119.73667 * 179.97438 * 21 20 19 23 23 O 1.31705 * 120.00459 * 6.89126 * 22 21 20 24 24 O 1.31698 * 119.99902 * 186.88801 * 22 21 20 25 25 H 1.08003 * 119.99940 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00058 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99940 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47045 * 174.99847 * 5 3 2 29 29 H 1.09001 * 109.47338 * 295.00081 * 5 3 2 30 30 H 0.96699 * 113.99977 * 180.02562 * 6 5 3 31 31 H 0.96998 * 120.00316 * 334.99371 * 7 3 2 32 32 H 1.08001 * 120.24193 * 0.27950 * 9 8 7 33 33 H 0.96993 * 119.99666 * 180.02562 * 14 13 11 34 34 H 1.07999 * 120.02009 * 180.02562 * 19 10 9 35 35 H 1.07999 * 119.74998 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1316 0.0896 5 6 3.0349 1.3331 1.1817 6 8 3.8840 0.1850 1.1276 7 7 2.8132 1.4361 -1.2518 8 6 3.1525 2.7025 -1.7334 9 6 2.9017 3.8235 -0.9655 10 6 3.2482 5.0981 -1.4623 11 6 3.0001 6.2474 -0.6957 12 1 2.1898 6.2556 0.0183 13 6 3.8403 7.4359 -0.8641 14 7 3.4670 8.5694 -0.3608 15 14 5.4498 7.3163 -1.8047 16 1 5.2167 7.6604 -3.2303 17 1 6.4351 8.2621 -1.2218 18 1 5.9769 5.9313 -1.7095 19 6 3.8460 5.2087 -2.7383 20 6 4.0833 4.0874 -3.4794 21 6 3.7424 2.8354 -2.9903 22 7 4.0068 1.6306 -3.8086 23 8 4.6843 1.7339 -4.9332 24 8 3.5645 0.4552 -3.4120 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.6423 2.2368 1.1313 29 1 2.4721 1.3252 2.1151 30 1 4.5268 0.1369 1.8484 31 1 3.0741 0.6433 -1.7462 32 1 2.4477 3.7245 0.0094 33 1 4.0230 9.3562 -0.4726 34 1 4.1150 6.1799 -3.1266 35 1 4.5406 4.1759 -4.4538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169784629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:52 Heat of formation + Delta-G solvation = 8.545716 kcal Electronic energy + Delta-G solvation = -21594.239107 eV Core-core repulsion = 18175.732330 eV Total energy + Delta-G solvation = -3418.506777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.31367 -37.58894 -36.89227 -35.32391 -34.28474 -33.34525 -32.58853 -31.18616 -29.14744 -27.53053 -27.02123 -23.70342 -22.82687 -21.34827 -21.19761 -19.48360 -18.33342 -17.57645 -17.09282 -16.85034 -16.00816 -15.79566 -15.38492 -14.90408 -14.60477 -14.22155 -13.84007 -13.48914 -13.42538 -13.14963 -12.67799 -12.53954 -12.38525 -11.94143 -11.59343 -11.30741 -11.20090 -10.88031 -10.69583 -10.24945 -9.98730 -9.93479 -9.78808 -9.65164 -9.59143 -9.47682 -9.31892 -8.45874 -7.84919 -7.01518 -5.28706 0.67514 2.25711 2.27205 2.50006 2.67257 2.69228 2.83168 2.87370 3.42226 3.79253 4.07203 4.42376 4.78841 4.86883 5.23086 5.36310 5.47685 5.51460 5.71928 5.78143 5.81813 5.92774 5.99865 6.11915 6.24442 6.48123 6.64833 6.67928 6.79736 6.86075 7.10604 7.19656 7.29593 7.41193 7.69872 7.77873 7.91252 8.11170 8.18161 8.55820 9.05599 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.006617 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.733910 B = 4230.480284 C = 5360.867918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.177 3.823 4 H 0.095 0.905 5 C 0.060 3.940 6 O -0.565 6.565 7 N -0.717 5.717 8 C 0.305 3.695 9 C -0.310 4.310 10 C 0.114 3.886 11 C -0.352 4.352 12 H 0.107 0.893 13 C 0.070 3.930 14 N -0.727 5.727 15 Si 0.924 3.076 16 H -0.256 1.256 17 H -0.280 1.280 18 H -0.231 1.231 19 C -0.231 4.231 20 C -0.006 4.006 21 C -0.154 4.154 22 N 0.056 4.944 23 O -0.302 6.302 24 O -0.324 6.324 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.373 0.627 31 H 0.416 0.584 32 H 0.119 0.881 33 H 0.307 0.693 34 H 0.115 0.885 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 -2.027 6.511 6.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.164 4.164 3 C 0.071 3.929 4 H 0.113 0.887 5 C -0.020 4.020 6 O -0.369 6.369 7 N -0.361 5.361 8 C 0.196 3.804 9 C -0.337 4.337 10 C 0.108 3.892 11 C -0.377 4.377 12 H 0.125 0.875 13 C -0.164 4.164 14 N -0.345 5.345 15 Si 0.748 3.252 16 H -0.181 1.181 17 H -0.207 1.207 18 H -0.153 1.153 19 C -0.252 4.252 20 C -0.026 4.026 21 C -0.260 4.260 22 N 0.477 4.523 23 O -0.462 6.462 24 O -0.470 6.470 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.135 0.865 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.267 0.733 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.855 -1.843 6.294 6.816 hybrid contribution 1.017 -0.186 -0.161 1.046 sum -0.838 -2.029 6.133 6.514 Atomic orbital electron populations 1.23877 0.95736 1.01932 1.00454 1.22919 0.95629 0.98418 0.99473 1.20128 0.92089 0.96210 0.84514 0.88736 1.22778 0.92925 0.88794 0.97454 1.86514 1.51442 1.45377 1.53565 1.45977 1.58837 1.06761 1.24500 1.17256 0.88438 0.86515 0.88227 1.20236 1.22340 0.89428 1.01672 1.17553 0.88631 0.92445 0.90523 1.21346 1.09745 0.91985 1.14631 0.87487 1.28094 1.01452 0.93551 0.93263 1.68946 1.36823 1.01068 1.27679 0.86096 0.78130 0.81682 0.79293 1.18100 1.20651 1.15330 1.20808 1.11239 0.96560 0.96611 1.19934 0.94202 0.89429 0.99080 1.19485 1.28475 0.83130 0.94899 1.49920 0.97895 1.03014 1.01466 1.96121 1.43948 1.94634 1.11447 1.95745 1.61807 1.12747 1.76712 0.88456 0.88225 0.86520 0.92295 0.93358 0.78090 0.73268 0.86360 0.88004 0.86793 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 14.32 29.02 0.42 -1.81 16 2 C -0.15 -2.07 8.57 -36.02 -0.31 -2.38 16 3 C 0.18 2.77 2.40 -69.08 -0.17 2.60 16 4 H 0.09 1.42 6.45 -51.93 -0.33 1.08 16 5 C 0.06 0.83 6.62 37.16 0.25 1.07 16 6 O -0.56 -7.96 12.95 -35.23 -0.46 -8.42 16 7 N -0.72 -14.09 5.02 -53.33 -0.27 -14.36 16 8 C 0.31 6.56 6.61 -83.85 -0.55 6.00 16 9 C -0.31 -6.31 8.41 -38.51 -0.32 -6.63 16 10 C 0.11 2.40 5.27 -106.83 -0.56 1.84 16 11 C -0.35 -7.40 9.87 -35.45 -0.35 -7.75 16 12 H 0.11 2.28 8.06 -52.48 -0.42 1.85 16 13 C 0.07 1.39 5.64 -15.19 -0.09 1.30 16 14 N -0.73 -14.56 13.89 55.98 0.78 -13.79 16 15 Si 0.92 16.41 24.49 -169.99 -4.16 12.25 16 16 H -0.26 -4.40 6.73 56.52 0.38 -4.02 16 17 H -0.28 -4.73 7.11 56.52 0.40 -4.32 16 18 H -0.23 -4.37 6.64 56.52 0.38 -4.00 16 19 C -0.23 -4.83 7.08 -39.03 -0.28 -5.11 16 20 C -0.01 -0.14 9.50 -40.05 -0.38 -0.52 16 21 C -0.15 -3.60 6.92 -79.32 -0.55 -4.15 16 22 N 0.06 1.41 4.98 34.27 0.17 1.58 16 23 O -0.30 -7.88 19.15 -31.57 -0.60 -8.48 16 24 O -0.32 -8.23 16.31 -31.57 -0.51 -8.74 16 25 H 0.10 1.12 7.84 -52.48 -0.41 0.71 16 26 H 0.10 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.12 1.71 7.86 -52.48 -0.41 1.29 16 28 H 0.06 0.87 7.21 -51.93 -0.37 0.50 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.37 3.51 9.12 45.56 0.42 3.93 16 31 H 0.42 8.92 4.91 -41.66 -0.20 8.71 16 32 H 0.12 2.17 5.88 -52.49 -0.31 1.86 16 33 H 0.31 5.37 8.27 -40.82 -0.34 5.04 16 34 H 0.11 2.23 4.14 -52.49 -0.22 2.01 16 35 H 0.13 2.56 7.57 -52.49 -0.40 2.16 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -27.28 301.97 -6.10 -33.38 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -2.69 Total: 17.55 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.90 Total: -15.52 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.68 Total: -26.56 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -1.58 Total: -25.64 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: -4.16 Total: 12.25 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.28 -6.10 -33.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169784629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.923 kcal (2) G-P(sol) polarization free energy of solvation -27.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds