Wall clock time and date at job start Tue Mar 31 2020 00:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 120.00137 * 2 1 4 4 H 1.08996 * 109.46843 * 4.99932 * 3 2 1 5 5 C 1.52997 * 109.47119 * 124.99517 * 3 2 1 6 6 O 1.42901 * 109.47102 * 55.00309 * 5 3 2 7 7 N 1.46503 * 109.46744 * 244.99801 * 3 2 1 8 8 C 1.39673 * 119.99430 * 155.00382 * 7 3 2 9 9 C 1.38166 * 119.99656 * 6.54853 * 8 7 3 10 10 C 1.41127 * 119.51178 * 180.02562 * 9 8 7 11 11 C 1.40355 * 120.25877 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99374 * 332.23814 * 11 10 9 13 13 C 1.46524 * 120.00371 * 152.23672 * 11 10 9 14 14 N 1.29515 * 119.99981 * 166.66896 * 13 11 10 15 15 Si 1.86804 * 119.99828 * 346.67151 * 13 11 10 16 16 H 1.48491 * 109.47043 * 92.92100 * 15 13 11 17 17 H 1.48500 * 109.46821 * 212.92147 * 15 13 11 18 18 H 1.48501 * 109.46984 * 332.92083 * 15 13 11 19 19 C 1.41339 * 119.48957 * 0.02562 * 10 9 8 20 20 C 1.36490 * 119.96635 * 0.02562 * 19 10 9 21 21 C 1.38668 * 120.49593 * 359.97438 * 20 19 10 22 22 N 1.48017 * 119.73667 * 179.97438 * 21 20 19 23 23 O 1.31705 * 120.00459 * 6.89126 * 22 21 20 24 24 O 1.31698 * 119.99902 * 186.88801 * 22 21 20 25 25 H 1.08003 * 119.99940 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00058 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99940 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47045 * 174.99847 * 5 3 2 29 29 H 1.09001 * 109.47338 * 295.00081 * 5 3 2 30 30 H 0.96699 * 113.99977 * 180.02562 * 6 5 3 31 31 H 0.96998 * 120.00316 * 334.99371 * 7 3 2 32 32 H 1.08001 * 120.24193 * 0.27950 * 9 8 7 33 33 H 0.96993 * 119.99666 * 180.02562 * 14 13 11 34 34 H 1.07999 * 120.02009 * 180.02562 * 19 10 9 35 35 H 1.07999 * 119.74998 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1316 0.0896 5 6 3.0349 1.3331 1.1817 6 8 3.8840 0.1850 1.1276 7 7 2.8132 1.4361 -1.2518 8 6 3.1525 2.7025 -1.7334 9 6 2.9017 3.8235 -0.9655 10 6 3.2482 5.0981 -1.4623 11 6 3.0001 6.2474 -0.6957 12 1 2.1898 6.2556 0.0183 13 6 3.8403 7.4359 -0.8641 14 7 3.4670 8.5694 -0.3608 15 14 5.4498 7.3163 -1.8047 16 1 5.2167 7.6604 -3.2303 17 1 6.4351 8.2621 -1.2218 18 1 5.9769 5.9313 -1.7095 19 6 3.8460 5.2087 -2.7383 20 6 4.0833 4.0874 -3.4794 21 6 3.7424 2.8354 -2.9903 22 7 4.0068 1.6306 -3.8086 23 8 4.6843 1.7339 -4.9332 24 8 3.5645 0.4552 -3.4120 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.6423 2.2368 1.1313 29 1 2.4721 1.3252 2.1151 30 1 4.5268 0.1369 1.8484 31 1 3.0741 0.6433 -1.7462 32 1 2.4477 3.7245 0.0094 33 1 4.0230 9.3562 -0.4726 34 1 4.1150 6.1799 -3.1266 35 1 4.5406 4.1759 -4.4538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169784629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:52 Heat of formation + Delta-G solvation = -10.120109 kcal Electronic energy + Delta-G solvation = -21595.048518 eV Core-core repulsion = 18175.732330 eV Total energy + Delta-G solvation = -3419.316188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90138 -38.93205 -38.53138 -36.61725 -35.84993 -34.93300 -34.07134 -32.84151 -30.55254 -28.86816 -28.75529 -25.36815 -24.15410 -22.93838 -22.65035 -20.70289 -19.94287 -19.17421 -18.58337 -18.26653 -17.54594 -17.19700 -16.89838 -16.46371 -15.94054 -15.56020 -15.19638 -15.04857 -14.95051 -14.59197 -14.14735 -13.86989 -13.70751 -13.20566 -13.10242 -12.81084 -12.71843 -12.29352 -11.98281 -11.81111 -11.74333 -11.53760 -11.42445 -11.26246 -11.01385 -10.83176 -10.44960 -10.15222 -9.45550 -8.60908 -6.96676 -1.17430 0.61255 0.86810 0.96221 1.22289 1.24378 1.39176 1.44689 1.98794 2.18690 2.68225 3.10324 3.42752 3.78653 3.83957 4.10012 4.12929 4.27298 4.31871 4.40046 4.52141 4.58093 4.69119 4.73553 4.90289 4.98857 5.03785 5.21568 5.43286 5.50775 5.60203 5.65801 5.72573 5.79264 6.14651 6.20542 6.40604 6.52084 6.90363 6.93342 7.48848 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.006617 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.733910 B = 4230.480284 C = 5360.867918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.171 4.171 3 C 0.167 3.833 4 H 0.104 0.896 5 C 0.064 3.936 6 O -0.585 6.585 7 N -0.717 5.717 8 C 0.288 3.712 9 C -0.302 4.302 10 C 0.088 3.912 11 C -0.324 4.324 12 H 0.108 0.892 13 C 0.050 3.950 14 N -0.726 5.726 15 Si 0.955 3.045 16 H -0.243 1.243 17 H -0.259 1.259 18 H -0.251 1.251 19 C -0.207 4.207 20 C -0.031 4.031 21 C -0.147 4.147 22 N 0.055 4.945 23 O -0.375 6.375 24 O -0.370 6.370 25 H 0.108 0.892 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.392 0.608 31 H 0.407 0.593 32 H 0.140 0.860 33 H 0.326 0.674 34 H 0.132 0.868 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 0.703 8.859 9.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.189 4.189 3 C 0.063 3.937 4 H 0.121 0.879 5 C -0.015 4.015 6 O -0.392 6.392 7 N -0.358 5.358 8 C 0.177 3.823 9 C -0.330 4.330 10 C 0.083 3.917 11 C -0.349 4.349 12 H 0.126 0.874 13 C -0.184 4.184 14 N -0.344 5.344 15 Si 0.776 3.224 16 H -0.168 1.168 17 H -0.184 1.184 18 H -0.175 1.175 19 C -0.228 4.228 20 C -0.051 4.051 21 C -0.259 4.259 22 N 0.453 4.547 23 O -0.515 6.515 24 O -0.503 6.503 25 H 0.126 0.874 26 H 0.137 0.863 27 H 0.125 0.875 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.241 0.759 31 H 0.256 0.744 32 H 0.158 0.842 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.615 0.752 8.542 8.965 hybrid contribution 1.093 -0.468 -0.446 1.270 sum -1.522 0.285 8.096 8.243 Atomic orbital electron populations 1.24137 0.95033 1.03383 0.97229 1.22796 0.96290 0.97412 1.02416 1.20454 0.92530 0.97303 0.83439 0.87877 1.22711 0.92703 0.88178 0.97872 1.86477 1.52235 1.45477 1.55051 1.46190 1.58290 1.05697 1.25595 1.17438 0.89155 0.87742 0.87940 1.20384 1.21792 0.88628 1.02218 1.17720 0.90086 0.92935 0.90964 1.21645 1.08358 0.92081 1.12798 0.87411 1.28485 1.02829 0.93173 0.93959 1.68886 1.37753 1.01724 1.26065 0.85636 0.76229 0.81051 0.79494 1.16759 1.18440 1.17476 1.21072 1.08628 0.96912 0.96208 1.20072 0.95775 0.89286 0.99954 1.20063 1.27354 0.83166 0.95360 1.49980 0.99500 1.03277 1.01928 1.96064 1.47303 1.94799 1.13335 1.95692 1.63662 1.13670 1.77302 0.87428 0.86259 0.87524 0.93405 0.90202 0.75883 0.74437 0.84228 0.86043 0.85056 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 14.32 67.79 0.97 -2.61 16 2 C -0.17 -4.70 8.57 25.65 0.22 -4.48 16 3 C 0.17 5.07 2.40 44.25 0.11 5.17 16 4 H 0.10 2.88 6.45 -2.39 -0.02 2.87 16 5 C 0.06 1.68 6.62 71.98 0.48 2.15 16 6 O -0.58 -16.05 12.95 -148.98 -1.93 -17.98 16 7 N -0.72 -28.50 5.02 -322.64 -1.62 -30.12 16 8 C 0.29 12.40 6.61 38.18 0.25 12.65 16 9 C -0.30 -11.77 8.41 22.96 0.19 -11.58 16 10 C 0.09 3.51 5.27 -21.29 -0.11 3.40 16 11 C -0.32 -12.39 9.87 24.95 0.25 -12.15 16 12 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 13 C 0.05 1.77 5.64 87.20 0.49 2.26 16 14 N -0.73 -25.77 13.89 23.21 0.32 -25.45 16 15 Si 0.95 29.97 24.49 68.60 1.68 31.65 16 16 H -0.24 -7.24 6.73 99.48 0.67 -6.57 16 17 H -0.26 -7.40 7.11 99.48 0.71 -6.69 16 18 H -0.25 -8.85 6.64 99.48 0.66 -8.18 16 19 C -0.21 -8.24 7.08 22.62 0.16 -8.08 16 20 C -0.03 -1.35 9.50 21.96 0.21 -1.14 16 21 C -0.15 -7.07 6.92 36.78 0.25 -6.82 16 22 N 0.05 2.95 4.98 -45.50 -0.23 2.73 16 23 O -0.38 -21.16 19.15 3.51 0.07 -21.09 16 24 O -0.37 -20.09 16.31 3.52 0.06 -20.04 16 25 H 0.11 2.19 7.84 -2.91 -0.02 2.16 16 26 H 0.12 2.18 8.06 -2.91 -0.02 2.16 16 27 H 0.11 3.13 7.86 -2.91 -0.02 3.11 16 28 H 0.05 1.34 7.21 -2.39 -0.02 1.32 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.39 6.93 9.12 -74.06 -0.68 6.26 16 31 H 0.41 18.18 4.91 -106.08 -0.52 17.66 16 32 H 0.14 4.73 5.88 -2.91 -0.02 4.72 16 33 H 0.33 9.82 8.27 -92.71 -0.77 9.05 16 34 H 0.13 4.71 4.14 -2.91 -0.01 4.70 16 35 H 0.13 5.47 7.57 -2.91 -0.02 5.45 16 Total: -1.00 -59.54 301.97 1.70 -57.84 By element: Atomic # 1 Polarization: 43.81 SS G_CDS: -0.12 Total: 43.69 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 3.47 Total: -21.22 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -1.52 Total: -52.84 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: -1.80 Total: -59.11 kcal Atomic # 14 Polarization: 29.97 SS G_CDS: 1.68 Total: 31.65 kcal Total: -59.54 1.70 -57.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169784629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.717 kcal (2) G-P(sol) polarization free energy of solvation -59.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds