Wall clock time and date at job start Tue Mar 31 2020 01:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47270 * 2 1 4 4 C 1.52997 * 109.47069 * 239.98870 * 2 1 3 5 5 C 1.50706 * 109.46877 * 175.00212 * 4 2 1 6 6 H 1.08000 * 120.00001 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00041 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99954 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47505 * 90.00058 * 9 7 5 11 11 H 1.48499 * 109.47286 * 210.00319 * 9 7 5 12 12 H 1.48504 * 109.47116 * 329.99472 * 9 7 5 13 13 S 1.81407 * 109.46562 * 119.99408 * 2 1 3 14 14 C 1.81396 * 103.00041 * 292.64633 * 13 2 1 15 15 H 1.08999 * 109.39797 * 53.24931 * 14 13 2 16 16 C 1.53058 * 109.44296 * 293.36349 * 14 13 2 17 17 C 1.53409 * 108.31006 * 191.78381 * 16 14 13 18 18 O 1.42826 * 108.36915 * 64.72725 * 17 16 14 19 19 C 1.35849 * 117.84531 * 310.78829 * 18 17 16 20 20 C 1.39145 * 118.49346 * 197.11583 * 19 18 17 21 21 C 1.37973 * 120.21697 * 180.19896 * 20 19 18 22 22 C 1.38295 * 119.95337 * 0.02562 * 21 20 19 23 23 C 1.38104 * 119.98404 * 359.75042 * 22 21 20 24 24 C 1.38377 * 121.80824 * 17.20139 * 19 18 17 25 25 H 1.09005 * 109.46916 * 65.39929 * 1 2 3 26 26 H 1.09001 * 109.47281 * 185.39921 * 1 2 3 27 27 H 1.09000 * 109.47022 * 305.40217 * 1 2 3 28 28 H 1.08992 * 109.47768 * 295.00289 * 4 2 1 29 29 H 1.09000 * 109.47138 * 55.01014 * 4 2 1 30 30 H 0.96998 * 120.00183 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.70346 * 72.07376 * 16 14 13 32 32 H 1.09002 * 109.71635 * 311.50051 * 16 14 13 33 33 H 1.08998 * 109.68631 * 305.00686 * 17 16 14 34 34 H 1.09001 * 109.71738 * 184.46404 * 17 16 14 35 35 H 1.07998 * 119.89336 * 0.18146 * 20 19 18 36 36 H 1.07988 * 120.02508 * 180.02562 * 21 20 19 37 37 H 1.07996 * 120.00633 * 179.97438 * 22 21 20 38 38 H 1.08003 * 119.83845 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7215 -1.2491 5 6 3.5420 -0.6152 -1.3125 6 1 4.0790 -0.0863 -0.5390 7 6 4.2304 -1.1931 -2.3580 8 7 3.5764 -1.8366 -3.3001 9 14 6.0921 -1.0619 -2.4362 10 1 6.7000 -2.2150 -1.7250 11 1 6.5297 -1.0691 -3.8553 12 1 6.5268 0.2029 -1.7908 13 16 2.1345 -0.8550 1.4813 14 6 1.6289 0.2520 2.8264 15 1 0.5612 0.4558 2.7455 16 6 2.4072 1.5660 2.7246 17 6 2.1884 2.3573 4.0205 18 8 2.7676 1.6226 5.0998 19 6 2.4585 0.3042 5.2078 20 6 2.7021 -0.3377 6.4181 21 6 2.4056 -1.6771 6.5658 22 6 1.8649 -2.3853 5.5081 23 6 1.6175 -1.7503 4.3069 24 6 1.9148 -0.4064 4.1522 25 1 -0.3633 0.4278 -0.9344 26 1 -0.3634 -1.0231 0.0967 27 1 -0.3633 0.5953 0.8377 28 1 1.7517 -1.7717 -1.2053 29 1 1.6055 -0.2620 -2.1369 30 1 4.0608 -2.2435 -4.0354 31 1 2.0429 2.1440 1.8753 32 1 3.4691 1.3555 2.5975 33 1 1.1205 2.4868 4.1959 34 1 2.6683 3.3328 3.9412 35 1 3.1250 0.2142 7.2445 36 1 2.5955 -2.1721 7.5065 37 1 1.6329 -3.4338 5.6226 38 1 1.1956 -2.3058 3.4823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188942290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:37 Heat of formation + Delta-G solvation = -32.795208 kcal Electronic energy + Delta-G solvation = -19251.438263 eV Core-core repulsion = 16377.432023 eV Total energy + Delta-G solvation = -2874.006240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.58011 -37.45571 -34.66648 -34.20654 -32.03397 -30.61315 -30.15127 -27.54925 -25.72191 -23.73459 -23.26435 -22.46590 -20.59111 -19.96298 -17.76134 -16.67311 -16.33320 -16.15128 -15.64922 -14.94947 -14.74433 -14.53631 -14.22247 -13.86467 -13.51920 -13.26544 -12.84749 -12.63178 -12.52136 -12.07280 -11.84811 -11.56122 -11.49855 -11.31671 -10.93958 -10.85256 -10.75749 -10.65768 -10.51120 -10.06906 -9.49911 -9.22482 -8.98878 -8.70033 -8.35053 -8.12441 -6.93040 -6.00630 -4.01264 1.26968 1.47004 2.31281 3.24549 3.31332 3.34761 3.40502 3.44148 3.83319 4.47634 4.57630 4.67875 4.75735 5.03381 5.08800 5.13613 5.28287 5.37030 5.38789 5.50163 5.54018 5.58488 5.62652 5.72413 5.86297 5.96075 6.04941 6.14850 6.30723 6.32446 6.51949 6.56709 6.59725 6.69988 6.81185 7.44248 7.50943 7.61585 7.97018 8.35095 9.03339 9.62278 11.10891 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.004912 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.382231 B = 5698.815914 C = 5843.279190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 H 0.074 0.926 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 S -0.205 6.205 14 C -0.034 4.034 15 H 0.089 0.911 16 C -0.154 4.154 17 C 0.065 3.935 18 O -0.317 6.317 19 C 0.138 3.862 20 C -0.156 4.156 21 C -0.088 4.088 22 C -0.155 4.155 23 C -0.068 4.068 24 C -0.134 4.134 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.025 0.975 29 H 0.032 0.968 30 H 0.260 0.740 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 4.908 16.878 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 H 0.092 0.908 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.199 1.199 13 S 0.028 5.972 14 C -0.162 4.162 15 H 0.107 0.893 16 C -0.193 4.193 17 C -0.012 4.012 18 O -0.231 6.231 19 C 0.092 3.908 20 C -0.174 4.174 21 C -0.107 4.107 22 C -0.173 4.173 23 C -0.088 4.088 24 C -0.136 4.136 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.326 3.941 16.831 18.088 hybrid contribution 0.263 1.134 -0.566 1.294 sum -5.063 5.074 16.264 17.774 Atomic orbital electron populations 1.22125 0.95423 1.02044 1.00784 1.23451 0.95942 1.01636 0.96833 0.90799 1.19004 0.96518 0.95595 0.88654 1.21226 0.91494 1.34415 1.07929 0.91917 1.24975 0.98369 0.95308 0.95649 1.69953 1.35530 1.36092 1.12140 0.86594 0.85888 0.78614 0.76965 1.20605 1.21369 1.19854 1.87341 1.78116 1.33061 0.98731 1.21956 1.01918 0.97417 0.94943 0.89254 1.22608 1.02977 0.95597 0.98131 1.23002 0.98383 0.94633 0.85144 1.85960 1.68168 1.18984 1.50009 1.18675 0.95710 0.83292 0.93160 1.20514 1.06101 0.95271 0.95552 1.20906 0.97686 0.93216 0.98866 1.21032 1.02639 1.00149 0.93486 1.21151 0.96935 0.93093 0.97586 1.19320 1.05720 0.95218 0.93321 0.92110 0.91927 0.94204 0.95642 0.95028 0.93019 0.89595 0.88907 0.92013 0.87375 0.85460 0.85645 0.85857 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.06 37.16 0.34 -2.02 16 2 C -0.05 -0.99 2.62 -26.73 -0.07 -1.06 16 3 H 0.07 1.44 7.26 -51.93 -0.38 1.07 16 4 C 0.04 1.01 4.45 -27.88 -0.12 0.89 16 5 C -0.51 -14.19 8.53 -34.44 -0.29 -14.49 16 6 H 0.06 1.73 7.60 -52.49 -0.40 1.33 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 S -0.20 -3.93 18.36 -107.50 -1.97 -5.90 16 14 C -0.03 -0.52 2.66 -27.82 -0.07 -0.59 16 15 H 0.09 1.26 7.11 -51.92 -0.37 0.89 16 16 C -0.15 -2.12 5.25 -26.49 -0.14 -2.26 16 17 C 0.07 0.75 7.03 37.37 0.26 1.01 16 18 O -0.32 -4.42 10.27 -19.27 -0.20 -4.61 16 19 C 0.14 2.00 6.47 -39.19 -0.25 1.74 16 20 C -0.16 -1.96 9.94 -39.34 -0.39 -2.35 16 21 C -0.09 -1.00 10.04 -39.66 -0.40 -1.40 16 22 C -0.15 -1.90 10.04 -39.61 -0.40 -2.30 16 23 C -0.07 -0.98 9.02 -39.53 -0.36 -1.34 16 24 C -0.13 -2.02 5.44 -104.44 -0.57 -2.58 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.55 7.11 -51.93 -0.37 0.18 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.09 1.11 7.39 -51.93 -0.38 0.72 16 32 H 0.09 1.47 8.11 -51.93 -0.42 1.04 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.14 1.98 7.17 -52.48 -0.38 1.61 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -30.63 321.87 -9.81 -40.43 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.64 Total: -0.47 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -2.56 Total: -25.21 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.20 Total: -4.61 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -1.97 Total: -5.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.63 -9.81 -40.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188942290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.639 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds