Wall clock time and date at job start Tue Mar 31 2020 01:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47270 * 2 1 4 4 C 1.52997 * 109.47069 * 239.98870 * 2 1 3 5 5 C 1.50706 * 109.46877 * 175.00212 * 4 2 1 6 6 H 1.08000 * 120.00001 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00041 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99954 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47505 * 90.00058 * 9 7 5 11 11 H 1.48499 * 109.47286 * 210.00319 * 9 7 5 12 12 H 1.48504 * 109.47116 * 329.99472 * 9 7 5 13 13 S 1.81407 * 109.46562 * 119.99408 * 2 1 3 14 14 C 1.81396 * 103.00041 * 292.64633 * 13 2 1 15 15 H 1.08999 * 109.39797 * 53.24931 * 14 13 2 16 16 C 1.53058 * 109.44296 * 293.36349 * 14 13 2 17 17 C 1.53409 * 108.31006 * 191.78381 * 16 14 13 18 18 O 1.42826 * 108.36915 * 64.72725 * 17 16 14 19 19 C 1.35849 * 117.84531 * 310.78829 * 18 17 16 20 20 C 1.39145 * 118.49346 * 197.11583 * 19 18 17 21 21 C 1.37973 * 120.21697 * 180.19896 * 20 19 18 22 22 C 1.38295 * 119.95337 * 0.02562 * 21 20 19 23 23 C 1.38104 * 119.98404 * 359.75042 * 22 21 20 24 24 C 1.38377 * 121.80824 * 17.20139 * 19 18 17 25 25 H 1.09005 * 109.46916 * 65.39929 * 1 2 3 26 26 H 1.09001 * 109.47281 * 185.39921 * 1 2 3 27 27 H 1.09000 * 109.47022 * 305.40217 * 1 2 3 28 28 H 1.08992 * 109.47768 * 295.00289 * 4 2 1 29 29 H 1.09000 * 109.47138 * 55.01014 * 4 2 1 30 30 H 0.96998 * 120.00183 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.70346 * 72.07376 * 16 14 13 32 32 H 1.09002 * 109.71635 * 311.50051 * 16 14 13 33 33 H 1.08998 * 109.68631 * 305.00686 * 17 16 14 34 34 H 1.09001 * 109.71738 * 184.46404 * 17 16 14 35 35 H 1.07998 * 119.89336 * 0.18146 * 20 19 18 36 36 H 1.07988 * 120.02508 * 180.02562 * 21 20 19 37 37 H 1.07996 * 120.00633 * 179.97438 * 22 21 20 38 38 H 1.08003 * 119.83845 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7215 -1.2491 5 6 3.5420 -0.6152 -1.3125 6 1 4.0790 -0.0863 -0.5390 7 6 4.2304 -1.1931 -2.3580 8 7 3.5764 -1.8366 -3.3001 9 14 6.0921 -1.0619 -2.4362 10 1 6.7000 -2.2150 -1.7250 11 1 6.5297 -1.0691 -3.8553 12 1 6.5268 0.2029 -1.7908 13 16 2.1345 -0.8550 1.4813 14 6 1.6289 0.2520 2.8264 15 1 0.5612 0.4558 2.7455 16 6 2.4072 1.5660 2.7246 17 6 2.1884 2.3573 4.0205 18 8 2.7676 1.6226 5.0998 19 6 2.4585 0.3042 5.2078 20 6 2.7021 -0.3377 6.4181 21 6 2.4056 -1.6771 6.5658 22 6 1.8649 -2.3853 5.5081 23 6 1.6175 -1.7503 4.3069 24 6 1.9148 -0.4064 4.1522 25 1 -0.3633 0.4278 -0.9344 26 1 -0.3634 -1.0231 0.0967 27 1 -0.3633 0.5953 0.8377 28 1 1.7517 -1.7717 -1.2053 29 1 1.6055 -0.2620 -2.1369 30 1 4.0608 -2.2435 -4.0354 31 1 2.0429 2.1440 1.8753 32 1 3.4691 1.3555 2.5975 33 1 1.1205 2.4868 4.1959 34 1 2.6683 3.3328 3.9412 35 1 3.1250 0.2142 7.2445 36 1 2.5955 -2.1721 7.5065 37 1 1.6329 -3.4338 5.6226 38 1 1.1956 -2.3058 3.4823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188942290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:35 Heat of formation + Delta-G solvation = -48.444921 kcal Electronic energy + Delta-G solvation = -19252.116886 eV Core-core repulsion = 16377.432023 eV Total energy + Delta-G solvation = -2874.684862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.58834 -38.42730 -36.43304 -35.38714 -34.01342 -31.59227 -31.15139 -29.43346 -26.77398 -25.27897 -24.68407 -23.48742 -22.28239 -21.01269 -18.77944 -18.49262 -17.70308 -17.22059 -17.05407 -16.56659 -16.08805 -15.93352 -15.33342 -14.96587 -14.75109 -14.47912 -14.26618 -14.08715 -13.65429 -13.62050 -13.32452 -13.25255 -12.71979 -12.60286 -12.47694 -12.39149 -12.31441 -12.02414 -11.79137 -11.48378 -11.36704 -11.21229 -10.63051 -10.40740 -9.74516 -9.13964 -8.45040 -8.19859 -6.26820 0.20801 0.45887 0.97703 1.37446 1.39287 1.49191 1.82229 2.35494 2.40548 2.83012 3.15345 3.50143 3.60090 3.74252 4.04818 4.06252 4.11421 4.23071 4.24738 4.33922 4.44684 4.52813 4.55022 4.59177 4.64031 4.87024 4.88575 4.99092 5.02578 5.09259 5.19582 5.34721 5.38466 5.51916 5.53534 5.61400 5.78345 5.86896 6.20864 6.44869 6.85205 7.40302 8.92162 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.004912 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.382231 B = 5698.815914 C = 5843.279190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.039 4.039 3 H 0.076 0.924 4 C 0.046 3.954 5 C -0.520 4.520 6 H 0.060 0.940 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.955 3.045 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.264 1.264 13 S -0.259 6.259 14 C -0.013 4.013 15 H 0.102 0.898 16 C -0.153 4.153 17 C 0.067 3.933 18 O -0.327 6.327 19 C 0.124 3.876 20 C -0.161 4.161 21 C -0.079 4.079 22 C -0.158 4.158 23 C -0.087 4.087 24 C -0.157 4.157 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.069 0.931 28 H -0.006 1.006 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 5.973 19.272 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 H 0.095 0.905 4 C 0.009 3.991 5 C -0.559 4.559 6 H 0.078 0.922 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.780 3.220 10 H -0.205 1.205 11 H -0.206 1.206 12 H -0.189 1.189 13 S -0.027 6.027 14 C -0.141 4.141 15 H 0.120 0.880 16 C -0.192 4.192 17 C -0.009 4.009 18 O -0.241 6.241 19 C 0.077 3.923 20 C -0.179 4.179 21 C -0.097 4.097 22 C -0.176 4.176 23 C -0.106 4.106 24 C -0.159 4.159 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.013 0.987 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.179 0.821 37 H 0.163 0.837 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.139 5.017 19.220 20.518 hybrid contribution 0.187 0.778 -1.202 1.444 sum -4.953 5.795 18.018 19.565 Atomic orbital electron populations 1.22037 0.92610 1.02462 1.02382 1.23181 0.98170 1.00605 0.94807 0.90550 1.18805 0.95428 0.94173 0.90736 1.21544 0.92960 1.33815 1.07563 0.92175 1.25818 1.03047 0.95118 0.95437 1.70071 1.37327 1.37194 1.12852 0.85594 0.80350 0.78803 0.77239 1.20464 1.20617 1.18852 1.87432 1.79115 1.35439 1.00748 1.21918 1.02565 0.96662 0.92935 0.88040 1.22564 1.01170 0.95363 1.00107 1.23197 0.99854 0.94848 0.82995 1.85945 1.68622 1.18856 1.50710 1.18923 0.95977 0.83684 0.93716 1.20886 1.05616 0.95957 0.95487 1.21324 0.95831 0.92768 0.99825 1.21344 1.02007 1.01293 0.92922 1.21213 0.97913 0.93180 0.98336 1.19386 1.07317 0.95770 0.93387 0.91558 0.92424 0.91160 0.98745 0.97045 0.92911 0.88717 0.91411 0.90204 0.84703 0.83520 0.82139 0.83744 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.06 71.98 0.65 -3.70 16 2 C -0.04 -1.57 2.62 30.59 0.08 -1.49 16 3 H 0.08 2.98 7.26 -2.39 -0.02 2.96 16 4 C 0.05 2.42 4.45 29.85 0.13 2.55 16 5 C -0.52 -29.56 8.53 25.60 0.22 -29.34 16 6 H 0.06 3.38 7.60 -2.91 -0.02 3.35 16 7 C 0.00 0.19 5.46 84.65 0.46 0.65 16 8 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 9 Si 0.95 45.57 29.54 68.60 2.03 47.60 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 13 S -0.26 -10.14 18.36 -56.49 -1.04 -11.18 16 14 C -0.01 -0.38 2.66 29.89 0.08 -0.30 16 15 H 0.10 2.71 7.11 -2.39 -0.02 2.69 16 16 C -0.15 -4.02 5.25 30.75 0.16 -3.86 16 17 C 0.07 1.38 7.03 72.12 0.51 1.88 16 18 O -0.33 -8.43 10.27 -91.85 -0.94 -9.37 16 19 C 0.12 3.36 6.47 22.52 0.15 3.51 16 20 C -0.16 -3.63 9.94 22.42 0.22 -3.41 16 21 C -0.08 -1.56 10.04 22.22 0.22 -1.34 16 22 C -0.16 -3.57 10.04 22.25 0.22 -3.34 16 23 C -0.09 -2.45 9.02 22.30 0.20 -2.25 16 24 C -0.16 -4.58 5.44 -19.75 -0.11 -4.69 16 25 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.07 1.82 7.11 -2.39 -0.02 1.80 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.09 2.29 7.39 -2.39 -0.02 2.27 16 32 H 0.07 2.13 8.11 -2.39 -0.02 2.11 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.16 1.99 8.06 -2.92 -0.02 1.97 16 37 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 38 H 0.12 3.70 7.17 -2.91 -0.02 3.68 16 Total: -1.00 -67.71 321.87 4.57 -63.15 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.03 Total: 11.76 kcal Atomic # 6 Polarization: -48.33 SS G_CDS: 3.20 Total: -45.13 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.28 Total: -56.83 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.94 Total: -9.37 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: -10.14 SS G_CDS: -1.04 Total: -11.18 kcal Total: -67.71 4.57 -63.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188942290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.703 kcal (2) G-P(sol) polarization free energy of solvation -67.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds