Wall clock time and date at job start Tue Mar 31 2020 01:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47325 * 2 1 4 4 C 1.53002 * 109.47076 * 119.99305 * 2 1 3 5 5 C 1.50696 * 109.47262 * 184.99991 * 4 2 1 6 6 H 1.08000 * 120.00514 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00065 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00012 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00194 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47344 * 60.00186 * 9 7 5 11 11 H 1.48501 * 109.47459 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47274 * 300.00207 * 9 7 5 13 13 S 1.81391 * 109.47577 * 239.99681 * 2 1 3 14 14 C 1.81401 * 103.00150 * 67.36350 * 13 2 1 15 15 H 1.09002 * 109.43436 * 307.41076 * 14 13 2 16 16 C 1.53075 * 109.43536 * 67.31676 * 14 13 2 17 17 C 1.53415 * 108.29876 * 168.23030 * 16 14 13 18 18 O 1.42824 * 108.38157 * 295.29777 * 17 16 14 19 19 C 1.35846 * 117.85911 * 49.17830 * 18 17 16 20 20 C 1.39152 * 118.49557 * 163.01494 * 19 18 17 21 21 C 1.37966 * 120.21526 * 179.56742 * 20 19 18 22 22 C 1.38293 * 119.95632 * 0.02562 * 21 20 19 23 23 C 1.38102 * 119.98630 * 0.08023 * 22 21 20 24 24 C 1.38369 * 121.80780 * 342.76413 * 19 18 17 25 25 H 1.08998 * 109.46900 * 184.65961 * 1 2 3 26 26 H 1.08995 * 109.47194 * 304.66207 * 1 2 3 27 27 H 1.08998 * 109.46892 * 64.66119 * 1 2 3 28 28 H 1.08998 * 109.47460 * 305.00884 * 4 2 1 29 29 H 1.09008 * 109.46641 * 65.00571 * 4 2 1 30 30 H 0.96992 * 120.00008 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.69677 * 48.53836 * 16 14 13 32 32 H 1.08995 * 109.70575 * 287.93441 * 16 14 13 33 33 H 1.09004 * 109.67627 * 55.02069 * 17 16 14 34 34 H 1.09003 * 109.68058 * 175.57434 * 17 16 14 35 35 H 1.07994 * 119.89180 * 359.57473 * 20 19 18 36 36 H 1.08001 * 120.02467 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.00352 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.84262 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5418 -0.6148 1.3129 6 1 4.0790 -0.0855 0.5397 7 6 4.2303 -1.1933 2.3580 8 7 3.5764 -1.8384 3.2993 9 14 6.0919 -1.0609 2.4371 10 1 6.4844 0.3700 2.4975 11 1 6.5870 -1.7620 3.6490 12 1 6.6846 -1.6861 1.2274 13 16 2.1347 -0.8551 -1.4810 14 6 1.6294 0.2518 -2.8263 15 1 0.5641 0.4655 -2.7394 16 6 2.4202 1.5592 -2.7344 17 6 2.1991 2.3482 -4.0314 18 8 2.7633 1.6047 -5.1125 19 6 2.4421 0.2887 -5.2138 20 6 2.6732 -0.3600 -6.4230 21 6 2.3686 -1.6984 -6.5623 22 6 1.8312 -2.3987 -5.4977 23 6 1.5984 -1.7576 -4.2969 24 6 1.9012 -0.4138 -4.1515 25 1 -0.3633 -1.0243 0.0835 26 1 -0.3633 0.5844 0.8452 27 1 -0.3633 0.4398 -0.9288 28 1 1.6053 -0.2616 2.1370 29 1 1.7516 -1.7715 1.2057 30 1 4.0608 -2.2456 4.0343 31 1 3.4811 1.3393 -2.6146 32 1 2.0673 2.1432 -1.8845 33 1 1.1310 2.4868 -4.1991 34 1 2.6889 3.3192 -3.9585 35 1 3.0925 0.1860 -7.2551 36 1 2.5496 -2.1988 -7.5020 37 1 1.5928 -3.4465 -5.6058 38 1 1.1783 -2.3067 -3.4672 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188942297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:41 Heat of formation + Delta-G solvation = -32.629946 kcal Electronic energy + Delta-G solvation = -19250.816664 eV Core-core repulsion = 16376.817591 eV Total energy + Delta-G solvation = -2873.999073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57956 -37.45497 -34.66777 -34.20562 -32.03260 -30.61333 -30.15011 -27.55366 -25.71874 -23.73478 -23.26212 -22.46527 -20.59212 -19.96293 -17.76071 -16.67455 -16.33113 -16.14995 -15.64792 -14.95124 -14.74716 -14.54138 -14.22293 -13.86164 -13.52523 -13.26717 -12.82335 -12.62974 -12.52779 -12.07393 -11.83199 -11.56777 -11.49467 -11.31663 -10.92899 -10.84900 -10.76545 -10.65420 -10.52040 -10.07040 -9.49640 -9.23555 -8.98804 -8.69909 -8.34533 -8.12360 -6.93039 -6.00368 -4.01102 1.27119 1.47153 2.31169 3.24834 3.31432 3.35921 3.39638 3.43822 3.83300 4.47767 4.57707 4.68043 4.75762 5.03513 5.08825 5.13520 5.28008 5.37103 5.38856 5.50181 5.53182 5.58712 5.63929 5.72774 5.86197 5.94364 6.05115 6.14998 6.31023 6.32511 6.52100 6.57000 6.59879 6.69881 6.81329 7.44339 7.50974 7.61442 7.97076 8.35209 9.03186 9.62337 11.11100 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.004904 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.412098 B = 5708.136603 C = 5844.070320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 H 0.074 0.926 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.275 1.275 13 S -0.204 6.204 14 C -0.035 4.035 15 H 0.090 0.910 16 C -0.154 4.154 17 C 0.065 3.935 18 O -0.317 6.317 19 C 0.138 3.862 20 C -0.156 4.156 21 C -0.088 4.088 22 C -0.155 4.155 23 C -0.068 4.068 24 C -0.134 4.134 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 4.887 -16.860 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 H 0.092 0.908 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 S 0.028 5.972 14 C -0.163 4.163 15 H 0.108 0.892 16 C -0.193 4.193 17 C -0.012 4.012 18 O -0.231 6.231 19 C 0.092 3.908 20 C -0.174 4.174 21 C -0.107 4.107 22 C -0.173 4.173 23 C -0.087 4.087 24 C -0.136 4.136 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.329 3.910 -16.812 18.064 hybrid contribution 0.264 1.152 0.566 1.311 sum -5.065 5.062 -16.246 17.754 Atomic orbital electron populations 1.22106 0.95434 1.02392 1.00353 1.23454 0.95936 1.01627 0.96869 0.90808 1.18998 0.96495 0.95556 0.88677 1.21186 0.91496 1.34475 1.07987 0.91973 1.24976 0.98364 0.95279 0.95654 1.69945 1.35645 1.35962 1.12166 0.86660 0.85838 0.78191 0.77396 1.20300 1.21389 1.20078 1.87346 1.78027 1.33105 0.98731 1.21975 1.01912 0.97436 0.94961 0.89237 1.22612 1.02881 0.95672 0.98128 1.23006 0.98584 0.94474 0.85110 1.85958 1.68360 1.19052 1.49751 1.18674 0.95644 0.83349 0.93166 1.20512 1.06121 0.95227 0.95586 1.20906 0.97654 0.93261 0.98847 1.21033 1.02702 1.00171 0.93414 1.21156 0.96901 0.93043 0.97646 1.19321 1.05785 0.95236 0.93263 0.91900 0.92300 0.94144 0.95041 0.95640 0.92961 0.88912 0.89586 0.92010 0.87374 0.85462 0.85646 0.85856 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.16 37.16 0.34 -2.01 16 2 C -0.05 -1.00 2.63 -26.73 -0.07 -1.07 16 3 H 0.07 1.44 7.30 -51.92 -0.38 1.06 16 4 C 0.04 1.02 4.45 -27.88 -0.12 0.90 16 5 C -0.51 -14.21 8.53 -34.44 -0.29 -14.51 16 6 H 0.06 1.71 7.60 -52.49 -0.40 1.31 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 S -0.20 -3.93 18.33 -107.50 -1.97 -5.90 16 14 C -0.03 -0.53 2.65 -27.81 -0.07 -0.60 16 15 H 0.09 1.27 6.85 -51.92 -0.36 0.91 16 16 C -0.15 -2.11 5.27 -26.48 -0.14 -2.25 16 17 C 0.07 0.74 7.03 37.37 0.26 1.01 16 18 O -0.32 -4.41 10.27 -19.26 -0.20 -4.61 16 19 C 0.14 2.00 6.47 -39.19 -0.25 1.74 16 20 C -0.16 -1.96 9.94 -39.34 -0.39 -2.35 16 21 C -0.09 -1.00 10.04 -39.66 -0.40 -1.40 16 22 C -0.15 -1.91 10.04 -39.61 -0.40 -2.30 16 23 C -0.07 -0.98 9.02 -39.53 -0.36 -1.34 16 24 C -0.13 -2.02 5.44 -104.44 -0.57 -2.59 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.57 6.72 -51.93 -0.35 0.22 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 31 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 32 H 0.09 1.11 7.41 -51.93 -0.39 0.72 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 38 H 0.14 1.99 7.15 -52.49 -0.38 1.62 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -30.61 321.37 -9.78 -40.39 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.60 Total: -0.39 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -2.56 Total: -25.21 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.20 Total: -4.61 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -1.97 Total: -5.90 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.61 -9.78 -40.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188942297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.758 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds