Wall clock time and date at job start Tue Mar 31 2020 01:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47325 * 2 1 4 4 C 1.53002 * 109.47076 * 119.99305 * 2 1 3 5 5 C 1.50696 * 109.47262 * 184.99991 * 4 2 1 6 6 H 1.08000 * 120.00514 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00065 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00012 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00194 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47344 * 60.00186 * 9 7 5 11 11 H 1.48501 * 109.47459 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47274 * 300.00207 * 9 7 5 13 13 S 1.81391 * 109.47577 * 239.99681 * 2 1 3 14 14 C 1.81401 * 103.00150 * 67.36350 * 13 2 1 15 15 H 1.09002 * 109.43436 * 307.41076 * 14 13 2 16 16 C 1.53075 * 109.43536 * 67.31676 * 14 13 2 17 17 C 1.53415 * 108.29876 * 168.23030 * 16 14 13 18 18 O 1.42824 * 108.38157 * 295.29777 * 17 16 14 19 19 C 1.35846 * 117.85911 * 49.17830 * 18 17 16 20 20 C 1.39152 * 118.49557 * 163.01494 * 19 18 17 21 21 C 1.37966 * 120.21526 * 179.56742 * 20 19 18 22 22 C 1.38293 * 119.95632 * 0.02562 * 21 20 19 23 23 C 1.38102 * 119.98630 * 0.08023 * 22 21 20 24 24 C 1.38369 * 121.80780 * 342.76413 * 19 18 17 25 25 H 1.08998 * 109.46900 * 184.65961 * 1 2 3 26 26 H 1.08995 * 109.47194 * 304.66207 * 1 2 3 27 27 H 1.08998 * 109.46892 * 64.66119 * 1 2 3 28 28 H 1.08998 * 109.47460 * 305.00884 * 4 2 1 29 29 H 1.09008 * 109.46641 * 65.00571 * 4 2 1 30 30 H 0.96992 * 120.00008 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.69677 * 48.53836 * 16 14 13 32 32 H 1.08995 * 109.70575 * 287.93441 * 16 14 13 33 33 H 1.09004 * 109.67627 * 55.02069 * 17 16 14 34 34 H 1.09003 * 109.68058 * 175.57434 * 17 16 14 35 35 H 1.07994 * 119.89180 * 359.57473 * 20 19 18 36 36 H 1.08001 * 120.02467 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.00352 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.84262 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5418 -0.6148 1.3129 6 1 4.0790 -0.0855 0.5397 7 6 4.2303 -1.1933 2.3580 8 7 3.5764 -1.8384 3.2993 9 14 6.0919 -1.0609 2.4371 10 1 6.4844 0.3700 2.4975 11 1 6.5870 -1.7620 3.6490 12 1 6.6846 -1.6861 1.2274 13 16 2.1347 -0.8551 -1.4810 14 6 1.6294 0.2518 -2.8263 15 1 0.5641 0.4655 -2.7394 16 6 2.4202 1.5592 -2.7344 17 6 2.1991 2.3482 -4.0314 18 8 2.7633 1.6047 -5.1125 19 6 2.4421 0.2887 -5.2138 20 6 2.6732 -0.3600 -6.4230 21 6 2.3686 -1.6984 -6.5623 22 6 1.8312 -2.3987 -5.4977 23 6 1.5984 -1.7576 -4.2969 24 6 1.9012 -0.4138 -4.1515 25 1 -0.3633 -1.0243 0.0835 26 1 -0.3633 0.5844 0.8452 27 1 -0.3633 0.4398 -0.9288 28 1 1.6053 -0.2616 2.1370 29 1 1.7516 -1.7715 1.2057 30 1 4.0608 -2.2456 4.0343 31 1 3.4811 1.3393 -2.6146 32 1 2.0673 2.1432 -1.8845 33 1 1.1310 2.4868 -4.1991 34 1 2.6889 3.3192 -3.9585 35 1 3.0925 0.1860 -7.2551 36 1 2.5496 -2.1988 -7.5020 37 1 1.5928 -3.4465 -5.6058 38 1 1.1783 -2.3067 -3.4672 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188942297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:39 Heat of formation + Delta-G solvation = -48.284719 kcal Electronic energy + Delta-G solvation = -19251.495506 eV Core-core repulsion = 16376.817591 eV Total energy + Delta-G solvation = -2874.677915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.58859 -38.42742 -36.43350 -35.38817 -34.01228 -31.59294 -31.15144 -29.43726 -26.77305 -25.27936 -24.68168 -23.48805 -22.28408 -21.01473 -18.77962 -18.48913 -17.70603 -17.21856 -17.05341 -16.56951 -16.08926 -15.93568 -15.34511 -14.96004 -14.75543 -14.47306 -14.26801 -14.07974 -13.65661 -13.59916 -13.33045 -13.24647 -12.69226 -12.61976 -12.50067 -12.39511 -12.31225 -12.01789 -11.78960 -11.48312 -11.37118 -11.22332 -10.62453 -10.40283 -9.74531 -9.13993 -8.45282 -8.19542 -6.26619 0.20836 0.45891 0.97456 1.37738 1.40779 1.48053 1.82436 2.35473 2.40809 2.82853 3.15497 3.50141 3.60162 3.74192 4.04870 4.05501 4.11378 4.22990 4.24555 4.33551 4.43399 4.52795 4.55400 4.59791 4.64058 4.86518 4.89192 4.98785 5.02660 5.09393 5.19316 5.34690 5.38543 5.51902 5.53278 5.61413 5.78317 5.86891 6.20968 6.44888 6.85120 7.40416 8.92249 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.004904 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.412098 B = 5708.136603 C = 5844.070320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.039 4.039 3 H 0.076 0.924 4 C 0.047 3.953 5 C -0.522 4.522 6 H 0.060 0.940 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.955 3.045 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.274 1.274 13 S -0.260 6.260 14 C -0.013 4.013 15 H 0.102 0.898 16 C -0.152 4.152 17 C 0.067 3.933 18 O -0.327 6.327 19 C 0.124 3.876 20 C -0.161 4.161 21 C -0.079 4.079 22 C -0.158 4.158 23 C -0.087 4.087 24 C -0.157 4.157 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.011 0.989 29 H -0.006 1.006 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 5.976 -19.238 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 H 0.095 0.905 4 C 0.009 3.991 5 C -0.560 4.560 6 H 0.078 0.922 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.780 3.220 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.200 1.200 13 S -0.028 6.028 14 C -0.141 4.141 15 H 0.120 0.880 16 C -0.192 4.192 17 C -0.009 4.009 18 O -0.241 6.241 19 C 0.077 3.923 20 C -0.180 4.180 21 C -0.097 4.097 22 C -0.176 4.176 23 C -0.106 4.106 24 C -0.159 4.159 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.029 0.971 29 H 0.012 0.988 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.179 0.821 37 H 0.163 0.837 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.138 5.011 -19.184 20.483 hybrid contribution 0.185 0.789 1.195 1.444 sum -4.953 5.801 -17.990 19.540 Atomic orbital electron populations 1.22018 0.92634 1.02471 1.02275 1.23185 0.98152 1.00612 0.94825 0.90525 1.18797 0.95417 0.94129 0.90750 1.21513 0.92959 1.33883 1.07638 0.92175 1.25822 1.03060 0.95082 0.95436 1.70067 1.37420 1.37070 1.12867 0.85654 0.80277 0.78720 0.77360 1.19028 1.20818 1.19988 1.87439 1.79042 1.35502 1.00775 1.21936 1.02561 0.96682 0.92942 0.88031 1.22568 1.01077 0.95429 1.00111 1.23201 1.00078 0.94673 0.82951 1.85943 1.68799 1.18925 1.50458 1.18921 0.95902 0.83753 0.93710 1.20885 1.05633 0.95897 0.95535 1.21324 0.95789 0.92827 0.99803 1.21344 1.02078 1.01300 0.92858 1.21217 0.97889 0.93148 0.98385 1.19386 1.07384 0.95780 0.93333 0.92634 0.91324 0.91305 0.97058 0.98756 0.92906 0.91393 0.88706 0.90209 0.84691 0.83514 0.82136 0.83749 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.16 71.98 0.66 -3.67 16 2 C -0.04 -1.58 2.63 30.59 0.08 -1.50 16 3 H 0.08 2.99 7.30 -2.39 -0.02 2.97 16 4 C 0.05 2.45 4.45 29.85 0.13 2.58 16 5 C -0.52 -29.62 8.53 25.60 0.22 -29.40 16 6 H 0.06 3.37 7.60 -2.91 -0.02 3.34 16 7 C 0.00 0.20 5.46 84.65 0.46 0.67 16 8 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 9 Si 0.95 45.51 29.54 68.60 2.03 47.54 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 13 S -0.26 -10.17 18.33 -56.49 -1.04 -11.21 16 14 C -0.01 -0.39 2.65 29.89 0.08 -0.31 16 15 H 0.10 2.71 6.85 -2.39 -0.02 2.70 16 16 C -0.15 -4.02 5.27 30.76 0.16 -3.85 16 17 C 0.07 1.37 7.03 72.12 0.51 1.88 16 18 O -0.33 -8.42 10.27 -91.82 -0.94 -9.36 16 19 C 0.12 3.37 6.47 22.52 0.15 3.51 16 20 C -0.16 -3.64 9.94 22.42 0.22 -3.41 16 21 C -0.08 -1.56 10.04 22.22 0.22 -1.34 16 22 C -0.16 -3.58 10.04 22.25 0.22 -3.35 16 23 C -0.09 -2.46 9.02 22.30 0.20 -2.26 16 24 C -0.16 -4.59 5.44 -19.75 -0.11 -4.70 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 1.81 6.72 -2.39 -0.02 1.79 16 28 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 29 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 30 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.07 2.13 8.11 -2.39 -0.02 2.11 16 32 H 0.09 2.29 7.41 -2.39 -0.02 2.27 16 33 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 38 H 0.12 3.71 7.15 -2.91 -0.02 3.69 16 Total: -1.00 -67.70 321.37 4.58 -63.12 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.03 Total: 11.89 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 3.21 Total: -45.16 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.28 Total: -56.82 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.94 Total: -9.36 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: -10.17 SS G_CDS: -1.04 Total: -11.21 kcal Total: -67.70 4.58 -63.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188942297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.835 kcal (2) G-P(sol) polarization free energy of solvation -67.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds