Wall clock time and date at job start Tue Mar 31 2020 01:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09007 * 109.47185 * 2 1 4 4 C 1.52995 * 109.47481 * 120.00511 * 2 1 3 5 5 C 1.50701 * 109.47318 * 185.00053 * 4 2 1 6 6 H 1.08000 * 119.99832 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00208 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00120 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99983 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46729 * 90.00032 * 9 7 5 11 11 H 1.48493 * 109.47196 * 209.99655 * 9 7 5 12 12 H 1.48496 * 109.47601 * 330.00197 * 9 7 5 13 13 S 1.81401 * 109.46960 * 240.00704 * 2 1 3 14 14 C 1.81399 * 103.00356 * 71.18906 * 13 2 1 15 15 H 1.09000 * 109.43793 * 173.61162 * 14 13 2 16 16 C 1.53076 * 109.43470 * 53.69494 * 14 13 2 17 17 C 1.53412 * 108.28477 * 191.70181 * 16 14 13 18 18 O 1.42826 * 108.38154 * 64.73531 * 17 16 14 19 19 C 1.35852 * 117.86906 * 310.90044 * 18 17 16 20 20 C 1.39145 * 118.48888 * 196.77439 * 19 18 17 21 21 C 1.37975 * 120.21577 * 179.97438 * 20 19 18 22 22 C 1.38289 * 119.95323 * 0.43350 * 21 20 19 23 23 C 1.38099 * 119.98561 * 359.71556 * 22 21 20 24 24 C 1.38365 * 121.81424 * 17.05813 * 19 18 17 25 25 H 1.08998 * 109.47769 * 52.39547 * 1 2 3 26 26 H 1.08999 * 109.47317 * 172.39883 * 1 2 3 27 27 H 1.09004 * 109.47143 * 292.39387 * 1 2 3 28 28 H 1.08999 * 109.47006 * 304.99729 * 4 2 1 29 29 H 1.09000 * 109.47285 * 65.00093 * 4 2 1 30 30 H 0.97004 * 120.00555 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.70476 * 72.00184 * 16 14 13 32 32 H 1.09006 * 109.70366 * 311.39608 * 16 14 13 33 33 H 1.09005 * 109.67646 * 305.01367 * 17 16 14 34 34 H 1.08992 * 109.68549 * 184.45664 * 17 16 14 35 35 H 1.08004 * 119.89964 * 0.19196 * 20 19 18 36 36 H 1.07997 * 120.02381 * 180.20051 * 21 20 19 37 37 H 1.07993 * 120.00808 * 179.73036 * 22 21 20 38 38 H 1.08003 * 119.84498 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0861 0.5390 7 6 4.2305 -1.1936 2.3575 8 7 3.5766 -1.8380 3.2992 9 14 6.0922 -1.0624 2.4357 10 1 6.4710 0.1598 3.1895 11 1 6.6444 -2.2580 3.1218 12 1 6.6414 -0.9844 1.0583 13 16 2.1345 -0.8550 -1.4813 14 6 1.7332 0.3067 -2.8154 15 1 2.1567 -0.0562 -3.7520 16 6 2.3227 1.6811 -2.4886 17 6 1.7300 2.7040 -3.4662 18 8 0.3250 2.7950 -3.2259 19 6 -0.3827 1.6378 -3.1508 20 6 -1.7675 1.6976 -3.2732 21 6 -2.5212 0.5441 -3.2029 22 6 -1.9005 -0.6751 -3.0012 23 6 -0.5266 -0.7378 -2.8762 24 6 0.2357 0.4162 -2.9517 25 1 -0.3634 0.6271 -0.8141 26 1 -0.3634 -1.0186 -0.1359 27 1 -0.3633 0.3915 0.9502 28 1 1.6054 -0.2619 2.1369 29 1 1.7517 -1.7716 1.2054 30 1 4.0610 -2.2449 4.0346 31 1 3.4066 1.6519 -2.5997 32 1 2.0650 1.9578 -1.4662 33 1 1.9067 2.3773 -4.4911 34 1 2.1937 3.6771 -3.3054 35 1 -2.2537 2.6496 -3.4272 36 1 -3.5955 0.5937 -3.3015 37 1 -2.4900 -1.5780 -2.9416 38 1 -0.0442 -1.6911 -2.7183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188942302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:46 Heat of formation + Delta-G solvation = -26.309926 kcal Electronic energy + Delta-G solvation = -19805.763772 eV Core-core repulsion = 16932.038755 eV Total energy + Delta-G solvation = -2873.725017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64916 -37.46449 -34.78773 -34.04547 -31.93692 -30.63090 -30.14295 -27.37237 -25.75423 -23.70601 -23.21262 -22.41695 -20.63618 -19.89230 -17.76309 -16.64323 -16.36283 -16.16086 -15.60349 -14.93780 -14.72021 -14.43712 -14.15615 -13.87312 -13.53861 -13.33828 -12.70502 -12.58169 -12.39903 -12.10422 -11.74983 -11.50408 -11.37368 -11.29326 -10.95560 -10.84518 -10.70728 -10.62066 -10.45552 -10.06209 -9.46526 -9.17073 -9.00476 -8.59380 -8.34311 -8.07301 -6.91043 -5.99379 -4.00113 1.32405 1.51650 2.33169 3.22576 3.33189 3.35491 3.39730 3.44268 3.87853 4.47755 4.56889 4.68324 4.78080 5.04447 5.10569 5.13989 5.32600 5.37947 5.41075 5.53236 5.58054 5.63670 5.72770 5.87428 5.91932 6.02496 6.10267 6.17234 6.34878 6.48130 6.56104 6.63745 6.69130 6.80531 6.84507 7.47240 7.54579 7.64311 7.97921 8.36896 9.04217 9.62992 11.12162 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.005313 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.752708 B = 5268.517916 C = 5803.589262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 H 0.074 0.926 4 C 0.040 3.960 5 C -0.511 4.511 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.272 1.272 13 S -0.211 6.211 14 C -0.033 4.033 15 H 0.111 0.889 16 C -0.157 4.157 17 C 0.065 3.935 18 O -0.318 6.318 19 C 0.134 3.866 20 C -0.157 4.157 21 C -0.089 4.089 22 C -0.156 4.156 23 C -0.062 4.062 24 C -0.150 4.150 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.025 0.975 30 H 0.260 0.740 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 6.454 -14.721 18.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 H 0.092 0.908 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.197 1.197 13 S 0.022 5.978 14 C -0.161 4.161 15 H 0.128 0.872 16 C -0.196 4.196 17 C -0.012 4.012 18 O -0.233 6.233 19 C 0.087 3.913 20 C -0.176 4.176 21 C -0.107 4.107 22 C -0.175 4.175 23 C -0.081 4.081 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.230 5.489 -14.588 17.626 hybrid contribution 0.663 1.017 0.322 1.256 sum -7.567 6.506 -14.266 17.410 Atomic orbital electron populations 1.22302 0.95183 1.02042 1.01237 1.23424 0.96252 1.01142 0.96071 0.90809 1.19022 0.96444 0.95578 0.88812 1.21228 0.91519 1.34299 1.07946 0.91951 1.24985 0.98347 0.95324 0.95699 1.69956 1.35535 1.36079 1.12130 0.86600 0.85886 0.77416 0.78207 1.20804 1.21315 1.19700 1.87045 1.80286 1.29836 1.00612 1.22057 0.93221 0.98914 1.01949 0.87163 1.22581 1.02261 0.93570 1.01203 1.23008 0.78582 1.01001 0.98572 1.85961 1.21562 1.28604 1.87126 1.18694 0.91150 0.84689 0.96781 1.20503 0.90864 0.99362 1.06855 1.20889 0.99411 0.91961 0.98447 1.21010 0.94594 0.97838 1.04030 1.21187 0.93494 0.98299 0.95159 1.19875 0.95333 0.93191 1.06840 0.92928 0.92168 0.92751 0.95092 0.95715 0.93034 0.88675 0.89529 0.91897 0.87440 0.85653 0.85794 0.85985 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 7.80 37.15 0.29 -2.41 16 2 C -0.04 -0.84 2.41 -26.74 -0.06 -0.90 16 3 H 0.07 1.54 6.04 -51.92 -0.31 1.22 16 4 C 0.04 1.01 4.44 -27.89 -0.12 0.89 16 5 C -0.51 -14.20 8.53 -34.44 -0.29 -14.50 16 6 H 0.06 1.70 7.60 -52.49 -0.40 1.31 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 S -0.21 -4.02 18.69 -107.50 -2.01 -6.02 16 14 C -0.03 -0.49 2.94 -27.81 -0.08 -0.57 16 15 H 0.11 1.49 8.14 -51.92 -0.42 1.07 16 16 C -0.16 -2.15 5.44 -26.48 -0.14 -2.29 16 17 C 0.07 0.74 7.03 37.37 0.26 1.00 16 18 O -0.32 -4.42 10.27 -19.28 -0.20 -4.62 16 19 C 0.13 1.90 5.89 -39.20 -0.23 1.67 16 20 C -0.16 -1.98 9.94 -39.34 -0.39 -2.37 16 21 C -0.09 -1.01 10.04 -39.66 -0.40 -1.41 16 22 C -0.16 -1.89 10.04 -39.61 -0.40 -2.29 16 23 C -0.06 -0.87 7.18 -39.53 -0.28 -1.15 16 24 C -0.15 -2.17 3.34 -104.44 -0.35 -2.52 16 25 H 0.05 0.90 4.84 -51.93 -0.25 0.64 16 26 H 0.06 1.08 7.88 -51.93 -0.41 0.67 16 27 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.09 1.37 5.67 -51.93 -0.29 1.07 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.14 1.95 7.16 -52.48 -0.38 1.58 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -30.47 312.24 -9.50 -39.97 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.41 Total: 0.70 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -2.30 Total: -25.32 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.20 Total: -4.62 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.01 Total: -6.02 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.47 -9.50 -39.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188942302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.658 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds