Wall clock time and date at job start Tue Mar 31 2020 01:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09007 * 109.47185 * 2 1 4 4 C 1.52995 * 109.47481 * 120.00511 * 2 1 3 5 5 C 1.50701 * 109.47318 * 185.00053 * 4 2 1 6 6 H 1.08000 * 119.99832 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00208 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00120 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99983 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46729 * 90.00032 * 9 7 5 11 11 H 1.48493 * 109.47196 * 209.99655 * 9 7 5 12 12 H 1.48496 * 109.47601 * 330.00197 * 9 7 5 13 13 S 1.81401 * 109.46960 * 240.00704 * 2 1 3 14 14 C 1.81399 * 103.00356 * 71.18906 * 13 2 1 15 15 H 1.09000 * 109.43793 * 173.61162 * 14 13 2 16 16 C 1.53076 * 109.43470 * 53.69494 * 14 13 2 17 17 C 1.53412 * 108.28477 * 191.70181 * 16 14 13 18 18 O 1.42826 * 108.38154 * 64.73531 * 17 16 14 19 19 C 1.35852 * 117.86906 * 310.90044 * 18 17 16 20 20 C 1.39145 * 118.48888 * 196.77439 * 19 18 17 21 21 C 1.37975 * 120.21577 * 179.97438 * 20 19 18 22 22 C 1.38289 * 119.95323 * 0.43350 * 21 20 19 23 23 C 1.38099 * 119.98561 * 359.71556 * 22 21 20 24 24 C 1.38365 * 121.81424 * 17.05813 * 19 18 17 25 25 H 1.08998 * 109.47769 * 52.39547 * 1 2 3 26 26 H 1.08999 * 109.47317 * 172.39883 * 1 2 3 27 27 H 1.09004 * 109.47143 * 292.39387 * 1 2 3 28 28 H 1.08999 * 109.47006 * 304.99729 * 4 2 1 29 29 H 1.09000 * 109.47285 * 65.00093 * 4 2 1 30 30 H 0.97004 * 120.00555 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.70476 * 72.00184 * 16 14 13 32 32 H 1.09006 * 109.70366 * 311.39608 * 16 14 13 33 33 H 1.09005 * 109.67646 * 305.01367 * 17 16 14 34 34 H 1.08992 * 109.68549 * 184.45664 * 17 16 14 35 35 H 1.08004 * 119.89964 * 0.19196 * 20 19 18 36 36 H 1.07997 * 120.02381 * 180.20051 * 21 20 19 37 37 H 1.07993 * 120.00808 * 179.73036 * 22 21 20 38 38 H 1.08003 * 119.84498 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0861 0.5390 7 6 4.2305 -1.1936 2.3575 8 7 3.5766 -1.8380 3.2992 9 14 6.0922 -1.0624 2.4357 10 1 6.4710 0.1598 3.1895 11 1 6.6444 -2.2580 3.1218 12 1 6.6414 -0.9844 1.0583 13 16 2.1345 -0.8550 -1.4813 14 6 1.7332 0.3067 -2.8154 15 1 2.1567 -0.0562 -3.7520 16 6 2.3227 1.6811 -2.4886 17 6 1.7300 2.7040 -3.4662 18 8 0.3250 2.7950 -3.2259 19 6 -0.3827 1.6378 -3.1508 20 6 -1.7675 1.6976 -3.2732 21 6 -2.5212 0.5441 -3.2029 22 6 -1.9005 -0.6751 -3.0012 23 6 -0.5266 -0.7378 -2.8762 24 6 0.2357 0.4162 -2.9517 25 1 -0.3634 0.6271 -0.8141 26 1 -0.3634 -1.0186 -0.1359 27 1 -0.3633 0.3915 0.9502 28 1 1.6054 -0.2619 2.1369 29 1 1.7517 -1.7716 1.2054 30 1 4.0610 -2.2449 4.0346 31 1 3.4066 1.6519 -2.5997 32 1 2.0650 1.9578 -1.4662 33 1 1.9067 2.3773 -4.4911 34 1 2.1937 3.6771 -3.3054 35 1 -2.2537 2.6496 -3.4272 36 1 -3.5955 0.5937 -3.3015 37 1 -2.4900 -1.5780 -2.9416 38 1 -0.0442 -1.6911 -2.7183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188942302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:45 Heat of formation + Delta-G solvation = -42.075946 kcal Electronic energy + Delta-G solvation = -19806.447438 eV Core-core repulsion = 16932.038755 eV Total energy + Delta-G solvation = -2874.408683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.65638 -38.43207 -36.49140 -35.37600 -33.92744 -31.61286 -31.12703 -29.33077 -26.77492 -25.26688 -24.66412 -23.42104 -22.38335 -20.94290 -18.77862 -18.47603 -17.64832 -17.43827 -16.88586 -16.56637 -16.08592 -15.87046 -15.29317 -14.92554 -14.68061 -14.53970 -14.29700 -14.11654 -13.61069 -13.56121 -13.37269 -13.16202 -12.68999 -12.56824 -12.48266 -12.39692 -12.28015 -11.87175 -11.74951 -11.53840 -11.41245 -11.19037 -10.61911 -10.40207 -9.65765 -9.08314 -8.43079 -8.18527 -6.26415 0.29519 0.52519 0.94715 1.39483 1.40985 1.52273 1.78550 2.38805 2.42052 2.88246 3.16366 3.51012 3.61332 3.77109 3.98237 4.08519 4.16974 4.25642 4.27538 4.36816 4.50838 4.56266 4.57198 4.61489 4.66845 4.83300 4.93272 4.97773 5.05184 5.12893 5.17956 5.37092 5.39281 5.52044 5.57709 5.66874 5.78491 5.90867 6.20849 6.48895 6.85297 7.40808 8.93679 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.005313 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.752708 B = 5268.517916 C = 5803.589262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.030 4.030 3 H 0.070 0.930 4 C 0.047 3.953 5 C -0.521 4.521 6 H 0.064 0.936 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 S -0.250 6.250 14 C -0.016 4.016 15 H 0.125 0.875 16 C -0.157 4.157 17 C 0.068 3.932 18 O -0.329 6.329 19 C 0.121 3.879 20 C -0.164 4.164 21 C -0.080 4.080 22 C -0.158 4.158 23 C -0.077 4.077 24 C -0.166 4.166 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.005 0.995 29 H -0.006 1.006 30 H 0.262 0.738 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.157 0.843 37 H 0.142 0.858 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 7.709 -16.536 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 H 0.089 0.911 4 C 0.009 3.991 5 C -0.559 4.559 6 H 0.082 0.918 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.188 1.188 13 S -0.017 6.017 14 C -0.144 4.144 15 H 0.143 0.857 16 C -0.195 4.195 17 C -0.009 4.009 18 O -0.244 6.244 19 C 0.074 3.926 20 C -0.182 4.182 21 C -0.099 4.099 22 C -0.176 4.176 23 C -0.096 4.096 24 C -0.168 4.168 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.023 0.977 29 H 0.013 0.987 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.160 0.840 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.526 6.753 -16.409 19.687 hybrid contribution 0.677 0.634 0.806 1.229 sum -7.849 7.387 -15.604 18.965 Atomic orbital electron populations 1.22173 0.93319 1.02253 1.01686 1.23090 0.97684 1.00122 0.94927 0.91144 1.18811 0.95738 0.94047 0.90481 1.21539 0.92642 1.33872 1.07832 0.91777 1.25884 1.03404 0.94987 0.95354 1.70089 1.37517 1.37170 1.12873 0.85520 0.79833 0.77635 0.78564 1.19767 1.21047 1.18804 1.87000 1.80872 1.31958 1.01869 1.22076 0.94274 0.98163 0.99881 0.85717 1.22555 1.02914 0.93512 1.00564 1.23192 0.77432 1.01555 0.98684 1.85947 1.22577 1.28601 1.87260 1.18911 0.91958 0.84475 0.97273 1.20839 0.90420 1.00629 1.06349 1.21272 1.00997 0.91055 0.96546 1.21297 0.93993 0.99204 1.03144 1.21215 0.94523 0.97737 0.96100 1.19826 0.94817 0.93771 1.08432 0.91382 0.92334 0.92937 0.97668 0.98733 0.92929 0.87838 0.91938 0.90034 0.84943 0.84029 0.82584 0.84012 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 7.80 71.98 0.56 -4.41 16 2 C -0.03 -1.26 2.41 30.59 0.07 -1.18 16 3 H 0.07 3.00 6.04 -2.39 -0.01 2.99 16 4 C 0.05 2.52 4.44 29.85 0.13 2.65 16 5 C -0.52 -29.56 8.53 25.60 0.22 -29.34 16 6 H 0.06 3.54 7.60 -2.91 -0.02 3.52 16 7 C 0.00 0.06 5.46 84.66 0.46 0.52 16 8 N -0.94 -57.49 13.29 21.45 0.28 -57.20 16 9 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 13 S -0.25 -9.63 18.69 -56.49 -1.06 -10.68 16 14 C -0.02 -0.45 2.94 29.90 0.09 -0.37 16 15 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 16 C -0.16 -4.07 5.44 30.76 0.17 -3.90 16 17 C 0.07 1.37 7.03 72.12 0.51 1.88 16 18 O -0.33 -8.41 10.27 -91.89 -0.94 -9.36 16 19 C 0.12 3.18 5.89 22.52 0.13 3.32 16 20 C -0.16 -3.69 9.94 22.43 0.22 -3.46 16 21 C -0.08 -1.58 10.04 22.22 0.22 -1.35 16 22 C -0.16 -3.48 10.04 22.25 0.22 -3.26 16 23 C -0.08 -2.06 7.18 22.30 0.16 -1.89 16 24 C -0.17 -4.59 3.34 -19.75 -0.07 -4.66 16 25 H 0.07 2.29 4.84 -2.39 -0.01 2.27 16 26 H 0.06 2.14 7.88 -2.39 -0.02 2.12 16 27 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 28 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 29 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.06 1.94 5.67 -2.38 -0.01 1.93 16 33 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 37 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.13 3.58 7.16 -2.91 -0.02 3.56 16 Total: -1.00 -66.66 312.24 4.46 -62.20 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.04 Total: 13.51 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 3.11 Total: -45.47 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.28 Total: -57.20 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.94 Total: -9.36 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: -9.63 SS G_CDS: -1.06 Total: -10.68 kcal Total: -66.66 4.46 -62.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188942302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.121 kcal (2) G-P(sol) polarization free energy of solvation -66.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds