Wall clock time and date at job start Tue Mar 31 2020 00:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.50703 * 2 1 4 4 C 1.53098 * 109.50313 * 239.86947 * 2 1 3 5 5 O 1.43015 * 109.29196 * 183.23929 * 4 2 1 6 6 C 1.43020 * 113.73974 * 58.60103 * 5 4 2 7 7 C 1.53095 * 109.29124 * 301.39847 * 6 5 4 8 8 N 1.47015 * 109.25739 * 56.82758 * 7 6 5 9 9 C 1.46904 * 110.99903 * 177.60628 * 8 7 6 10 10 C 1.52993 * 109.47389 * 293.95178 * 9 8 7 11 11 N 1.46500 * 109.47420 * 179.97438 * 10 9 8 12 12 S 1.65601 * 119.99927 * 165.00061 * 11 10 9 13 13 O 1.42102 * 106.39918 * 178.54312 * 12 11 10 14 14 O 1.42105 * 106.40267 * 311.46304 * 12 11 10 15 15 C 1.76196 * 107.21895 * 65.00174 * 12 11 10 16 16 H 1.07999 * 119.99881 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99859 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00667 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99868 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47065 * 89.99990 * 19 17 15 21 21 H 1.48498 * 109.47084 * 210.00076 * 19 17 15 22 22 H 1.48501 * 109.47278 * 329.99809 * 19 17 15 23 23 H 1.09000 * 109.46852 * 299.91242 * 1 2 3 24 24 H 1.08998 * 109.47111 * 59.91475 * 1 2 3 25 25 H 1.08999 * 109.46939 * 179.91513 * 1 2 3 26 26 H 1.09009 * 109.50876 * 303.15024 * 4 2 1 27 27 H 1.08998 * 109.50857 * 63.23676 * 4 2 1 28 28 H 1.09002 * 109.50941 * 181.44210 * 6 5 4 29 29 H 1.09003 * 109.50633 * 61.35674 * 6 5 4 30 30 H 1.08994 * 109.50879 * 176.75932 * 7 6 5 31 31 H 1.09001 * 109.51139 * 296.84838 * 7 6 5 32 32 H 1.09004 * 109.47055 * 53.95500 * 9 8 7 33 33 H 1.09002 * 109.46802 * 173.95218 * 9 8 7 34 34 H 1.09004 * 109.47285 * 300.00182 * 10 9 8 35 35 H 1.09001 * 109.46689 * 59.99912 * 10 9 8 36 36 H 0.96993 * 120.00081 * 345.00611 * 11 10 9 37 37 H 0.96989 * 120.00644 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2481 5 8 3.4693 -0.7881 -1.2059 6 6 3.9819 -1.4579 -0.0509 7 6 3.4904 -0.7410 1.2093 8 7 2.0210 -0.6948 1.1990 9 6 1.5056 -0.0635 2.4213 10 6 1.8335 -0.9452 3.6279 11 7 1.3200 -0.3154 4.8469 12 16 1.1942 -1.1958 6.2438 13 8 0.7042 -0.3050 7.2367 14 8 0.5398 -2.4084 5.8963 15 6 2.8290 -1.6350 6.7326 16 1 3.6734 -1.3209 6.1370 17 6 3.0303 -2.3787 7.8759 18 7 2.0022 -2.7608 8.6015 19 14 4.7636 -2.8438 8.3945 20 1 5.3146 -1.7886 9.2823 21 1 4.7320 -4.1372 9.1234 22 1 5.6222 -2.9753 7.1900 23 1 -0.3633 0.5125 0.8908 24 1 -0.3633 0.5151 -0.8892 25 1 -0.3633 -1.0277 -0.0015 26 1 1.6331 -1.7349 -1.2753 27 1 1.7266 -0.1808 -2.1390 28 1 5.0715 -1.4444 -0.0758 29 1 3.6308 -2.4899 -0.0429 30 1 3.8313 -1.2817 2.0921 31 1 3.8869 0.2742 1.2287 32 1 1.9700 0.9143 2.5488 33 1 0.4250 0.0551 2.3410 34 1 1.3690 -1.9230 3.5004 35 1 2.9140 -1.0638 3.7081 36 1 1.0537 0.6172 4.8357 37 1 2.1438 -3.2843 9.4056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193003010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:06 Heat of formation + Delta-G solvation = -132.861237 kcal Electronic energy + Delta-G solvation = -20449.148247 eV Core-core repulsion = 17159.953556 eV Total energy + Delta-G solvation = -3289.194691 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.91641 -36.65037 -35.19783 -34.31096 -33.93305 -33.07646 -32.59905 -29.21935 -27.29527 -26.13208 -25.66380 -22.82442 -21.82917 -20.18109 -18.96322 -17.47931 -16.65954 -16.46599 -16.05876 -15.70118 -15.39631 -15.08340 -14.82209 -14.40801 -14.18634 -13.90228 -13.65946 -13.14024 -12.94436 -12.34094 -12.12464 -12.03016 -11.83868 -11.53693 -11.30106 -11.22325 -11.19078 -10.93268 -10.66049 -10.60208 -10.34061 -10.27059 -10.17463 -9.71416 -9.24490 -9.00150 -8.49641 -8.45283 -6.69661 -5.31606 2.33365 3.06737 3.13481 3.19358 3.58760 3.73592 4.07547 4.56596 4.64842 4.75613 4.80034 4.87842 4.95912 5.09627 5.17669 5.30171 5.32330 5.41381 5.49264 5.52791 5.62519 5.72968 5.75594 5.81697 5.84077 6.04890 6.18629 6.24333 6.48490 6.78631 6.87352 6.94285 7.00338 7.32420 7.89357 7.97732 8.89344 10.24621 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.004696 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.289288 B = 5961.133321 C = 6813.292019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 H 0.048 0.952 4 C 0.069 3.931 5 O -0.389 6.389 6 C 0.063 3.937 7 C 0.011 3.989 8 N -0.529 5.529 9 C 0.044 3.956 10 C 0.131 3.869 11 N -1.138 6.138 12 S 2.717 3.283 13 O -1.007 7.007 14 O -1.006 7.006 15 C -1.020 5.020 16 H 0.101 0.899 17 C 0.133 3.867 18 N -0.845 5.845 19 Si 0.921 3.079 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.263 1.263 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.400 0.600 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 4.609 -16.951 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 H 0.066 0.934 4 C -0.008 4.008 5 O -0.307 6.307 6 C -0.014 4.014 7 C -0.117 4.117 8 N -0.256 5.256 9 C -0.085 4.085 10 C 0.003 3.997 11 N -0.893 5.893 12 S 2.817 3.183 13 O -0.998 6.998 14 O -0.996 6.996 15 C -1.154 5.154 16 H 0.119 0.881 17 C -0.085 4.085 18 N -0.475 5.475 19 Si 0.745 3.255 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.187 1.187 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.230 0.770 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.241 3.687 -16.543 16.994 hybrid contribution 1.597 0.944 0.561 1.938 sum 2.838 4.631 -15.981 16.879 Atomic orbital electron populations 1.21872 0.93432 1.03209 1.02148 1.22298 0.96471 0.96406 0.91240 0.93375 1.22708 0.80956 1.00441 0.96670 1.87960 1.20690 1.78671 1.43389 1.22696 0.98912 0.95879 0.83879 1.22920 0.88018 1.00621 1.00177 1.62154 1.08380 1.53337 1.01706 1.22436 1.01300 0.95814 0.88915 1.20966 0.98698 0.96925 0.83070 1.55971 1.82889 1.24187 1.26219 1.00347 0.76249 0.71975 0.69771 1.93374 1.82622 1.66878 1.56897 1.93360 1.76800 1.46181 1.83210 1.30540 1.17234 1.47953 1.19657 0.88079 1.24741 0.99639 0.90792 0.93346 1.69890 1.31684 1.31136 1.14772 0.86165 0.81748 0.78411 0.79219 1.19245 1.19961 1.18708 0.91732 0.91994 0.91261 0.92099 0.88698 0.88424 0.91974 0.88530 0.93863 0.94297 0.89428 0.89809 0.92448 0.76967 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.92 37.16 0.33 -1.01 16 2 C 0.04 0.46 2.59 -67.60 -0.17 0.29 16 3 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.07 0.68 6.29 37.21 0.23 0.91 16 5 O -0.39 -4.51 10.83 -35.23 -0.38 -4.89 16 6 C 0.06 0.66 7.01 37.21 0.26 0.92 16 7 C 0.01 0.12 5.43 -3.71 -0.02 0.10 16 8 N -0.53 -6.51 4.54 -226.34 -1.03 -7.54 16 9 C 0.04 0.58 4.88 -3.83 -0.02 0.57 16 10 C 0.13 2.21 6.15 -4.05 -0.02 2.18 16 11 N -1.14 -22.10 6.00 -10.61 -0.06 -22.16 16 12 S 2.72 71.54 5.02 -107.50 -0.54 71.00 16 13 O -1.01 -29.40 18.02 -57.17 -1.03 -30.43 16 14 O -1.01 -29.33 17.49 -57.17 -1.00 -30.33 16 15 C -1.02 -27.89 9.72 30.60 0.30 -27.59 16 16 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 17 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 18 N -0.85 -24.86 13.19 55.43 0.73 -24.13 16 19 Si 0.92 20.48 29.54 -169.99 -5.02 15.46 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.21 16 23 H 0.06 0.60 6.17 -51.93 -0.32 0.28 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 1.13 6.37 -51.93 -0.33 0.80 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.49 8.12 -51.93 -0.42 0.06 16 33 H 0.09 1.10 5.77 -51.93 -0.30 0.80 16 34 H 0.08 1.54 7.75 -51.93 -0.40 1.14 16 35 H 0.06 0.93 6.51 -51.93 -0.34 0.60 16 36 H 0.40 6.64 8.65 -34.47 -0.30 6.35 16 37 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -35.18 313.00 -8.17 -43.35 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.34 Total: 4.99 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 0.79 Total: -20.03 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.36 Total: -53.83 kcal Atomic # 8 Polarization: -63.24 SS G_CDS: -2.41 Total: -65.65 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 71.54 SS G_CDS: -0.54 Total: 71.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.18 -8.17 -43.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.514 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds