Wall clock time and date at job start Tue Mar 31 2020 00:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.50703 * 2 1 4 4 C 1.53098 * 109.50313 * 239.86947 * 2 1 3 5 5 O 1.43015 * 109.29196 * 183.23929 * 4 2 1 6 6 C 1.43020 * 113.73974 * 58.60103 * 5 4 2 7 7 C 1.53095 * 109.29124 * 301.39847 * 6 5 4 8 8 N 1.47015 * 109.25739 * 56.82758 * 7 6 5 9 9 C 1.46904 * 110.99903 * 177.60628 * 8 7 6 10 10 C 1.52993 * 109.47389 * 293.95178 * 9 8 7 11 11 N 1.46500 * 109.47420 * 179.97438 * 10 9 8 12 12 S 1.65601 * 119.99927 * 165.00061 * 11 10 9 13 13 O 1.42102 * 106.39918 * 178.54312 * 12 11 10 14 14 O 1.42105 * 106.40267 * 311.46304 * 12 11 10 15 15 C 1.76196 * 107.21895 * 65.00174 * 12 11 10 16 16 H 1.07999 * 119.99881 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99859 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00667 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99868 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47065 * 89.99990 * 19 17 15 21 21 H 1.48498 * 109.47084 * 210.00076 * 19 17 15 22 22 H 1.48501 * 109.47278 * 329.99809 * 19 17 15 23 23 H 1.09000 * 109.46852 * 299.91242 * 1 2 3 24 24 H 1.08998 * 109.47111 * 59.91475 * 1 2 3 25 25 H 1.08999 * 109.46939 * 179.91513 * 1 2 3 26 26 H 1.09009 * 109.50876 * 303.15024 * 4 2 1 27 27 H 1.08998 * 109.50857 * 63.23676 * 4 2 1 28 28 H 1.09002 * 109.50941 * 181.44210 * 6 5 4 29 29 H 1.09003 * 109.50633 * 61.35674 * 6 5 4 30 30 H 1.08994 * 109.50879 * 176.75932 * 7 6 5 31 31 H 1.09001 * 109.51139 * 296.84838 * 7 6 5 32 32 H 1.09004 * 109.47055 * 53.95500 * 9 8 7 33 33 H 1.09002 * 109.46802 * 173.95218 * 9 8 7 34 34 H 1.09004 * 109.47285 * 300.00182 * 10 9 8 35 35 H 1.09001 * 109.46689 * 59.99912 * 10 9 8 36 36 H 0.96993 * 120.00081 * 345.00611 * 11 10 9 37 37 H 0.96989 * 120.00644 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2481 5 8 3.4693 -0.7881 -1.2059 6 6 3.9819 -1.4579 -0.0509 7 6 3.4904 -0.7410 1.2093 8 7 2.0210 -0.6948 1.1990 9 6 1.5056 -0.0635 2.4213 10 6 1.8335 -0.9452 3.6279 11 7 1.3200 -0.3154 4.8469 12 16 1.1942 -1.1958 6.2438 13 8 0.7042 -0.3050 7.2367 14 8 0.5398 -2.4084 5.8963 15 6 2.8290 -1.6350 6.7326 16 1 3.6734 -1.3209 6.1370 17 6 3.0303 -2.3787 7.8759 18 7 2.0022 -2.7608 8.6015 19 14 4.7636 -2.8438 8.3945 20 1 5.3146 -1.7886 9.2823 21 1 4.7320 -4.1372 9.1234 22 1 5.6222 -2.9753 7.1900 23 1 -0.3633 0.5125 0.8908 24 1 -0.3633 0.5151 -0.8892 25 1 -0.3633 -1.0277 -0.0015 26 1 1.6331 -1.7349 -1.2753 27 1 1.7266 -0.1808 -2.1390 28 1 5.0715 -1.4444 -0.0758 29 1 3.6308 -2.4899 -0.0429 30 1 3.8313 -1.2817 2.0921 31 1 3.8869 0.2742 1.2287 32 1 1.9700 0.9143 2.5488 33 1 0.4250 0.0551 2.3410 34 1 1.3690 -1.9230 3.5004 35 1 2.9140 -1.0638 3.7081 36 1 1.0537 0.6172 4.8357 37 1 2.1438 -3.2843 9.4056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193003010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:05 Heat of formation + Delta-G solvation = -163.556942 kcal Electronic energy + Delta-G solvation = -20450.479313 eV Core-core repulsion = 17159.953556 eV Total energy + Delta-G solvation = -3290.525757 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.78771 -37.74737 -37.34384 -36.14583 -35.65227 -35.13749 -33.49455 -30.31380 -28.25979 -28.14148 -26.73451 -23.66133 -23.01210 -21.19267 -20.85977 -19.36893 -18.24588 -17.66035 -17.26211 -17.05372 -16.62015 -16.49419 -16.11993 -15.83788 -15.54601 -15.18891 -15.09362 -14.56535 -14.00173 -13.89041 -13.36767 -13.18016 -13.00874 -12.99253 -12.82260 -12.55954 -12.49167 -12.42017 -12.32400 -12.29463 -12.11116 -11.81872 -11.45089 -11.24496 -11.00219 -10.58071 -10.17429 -9.40673 -8.75110 -7.48279 0.34127 1.35126 1.35472 1.51553 2.20848 2.57808 2.61980 2.94950 3.11993 3.69921 3.75319 3.85793 3.93753 4.09674 4.18452 4.25829 4.31150 4.43747 4.47682 4.55140 4.70334 4.71828 4.78830 4.84118 4.89353 4.91501 4.98892 5.04689 5.17261 5.29706 5.35724 5.88921 5.93380 5.99300 6.18917 6.38341 6.78668 8.21556 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.004696 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.289288 B = 5961.133321 C = 6813.292019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 H 0.048 0.952 4 C 0.067 3.933 5 O -0.402 6.402 6 C 0.064 3.936 7 C 0.008 3.992 8 N -0.541 5.541 9 C 0.054 3.946 10 C 0.126 3.874 11 N -1.121 6.121 12 S 2.723 3.277 13 O -1.044 7.044 14 O -1.043 7.043 15 C -1.040 5.040 16 H 0.121 0.879 17 C 0.069 3.931 18 N -0.894 5.894 19 Si 0.991 3.009 20 H -0.256 1.256 21 H -0.264 1.264 22 H -0.246 1.246 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.415 0.585 37 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.775 5.153 -18.326 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 H 0.066 0.934 4 C -0.009 4.009 5 O -0.321 6.321 6 C -0.013 4.013 7 C -0.120 4.120 8 N -0.268 5.268 9 C -0.075 4.075 10 C -0.001 4.001 11 N -0.881 5.881 12 S 2.823 3.177 13 O -1.034 7.034 14 O -1.033 7.033 15 C -1.173 5.173 16 H 0.139 0.861 17 C -0.144 4.144 18 N -0.526 5.526 19 Si 0.809 3.191 20 H -0.180 1.180 21 H -0.188 1.188 22 H -0.169 1.169 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.249 0.751 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.831 4.251 -17.939 18.651 hybrid contribution 1.049 0.806 0.898 1.598 sum 3.880 5.057 -17.041 18.194 Atomic orbital electron populations 1.21867 0.92435 1.03038 1.03059 1.22381 0.97263 0.96203 0.90520 0.93385 1.22854 0.80162 1.00700 0.97212 1.87944 1.21673 1.78785 1.43703 1.22758 0.99937 0.95450 0.83115 1.22960 0.87660 1.00771 1.00594 1.62142 1.08918 1.53828 1.01878 1.22271 1.01968 0.95345 0.87921 1.21139 0.98852 0.96783 0.83292 1.55286 1.82868 1.24591 1.25306 0.99792 0.76104 0.71422 0.70337 1.93314 1.83335 1.67477 1.59307 1.93308 1.77714 1.48236 1.84009 1.30888 1.18050 1.48126 1.20277 0.86119 1.26025 1.04705 0.90388 0.93241 1.69985 1.34483 1.32325 1.15763 0.85115 0.75621 0.78740 0.79602 1.17977 1.18775 1.16935 0.92178 0.89758 0.91946 0.92225 0.86486 0.86703 0.92196 0.89089 0.93729 0.93062 0.88761 0.91711 0.91660 0.75087 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.92 71.98 0.64 -1.70 16 2 C 0.04 0.84 2.59 44.93 0.12 0.96 16 3 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 4 C 0.07 1.18 6.29 72.01 0.45 1.63 16 5 O -0.40 -8.55 10.83 -148.98 -1.61 -10.17 16 6 C 0.06 1.24 7.01 72.01 0.50 1.74 16 7 C 0.01 0.18 5.43 86.31 0.47 0.64 16 8 N -0.54 -12.51 4.54 -870.00 -3.95 -16.46 16 9 C 0.05 1.35 4.88 86.30 0.42 1.77 16 10 C 0.13 4.17 6.15 86.38 0.53 4.70 16 11 N -1.12 -43.12 6.00 -187.50 -1.12 -44.25 16 12 S 2.72 145.56 5.02 -56.49 -0.28 145.27 16 13 O -1.04 -62.25 18.02 -128.00 -2.31 -64.55 16 14 O -1.04 -62.44 17.49 -128.00 -2.24 -64.68 16 15 C -1.04 -56.63 9.72 67.73 0.66 -55.97 16 16 H 0.12 5.86 7.81 -2.91 -0.02 5.84 16 17 C 0.07 3.83 5.46 84.65 0.46 4.29 16 18 N -0.89 -53.33 13.19 21.45 0.28 -53.05 16 19 Si 0.99 40.86 29.54 68.60 2.03 42.89 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 23 H 0.06 1.01 6.17 -2.39 -0.01 1.00 16 24 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 2.03 6.37 -2.39 -0.02 2.02 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 1.17 8.12 -2.38 -0.02 1.15 16 33 H 0.09 2.24 5.77 -2.39 -0.01 2.22 16 34 H 0.06 2.40 7.75 -2.38 -0.02 2.38 16 35 H 0.07 2.06 6.51 -2.39 -0.02 2.04 16 36 H 0.42 13.45 8.65 -96.75 -0.84 12.61 16 37 H 0.30 15.99 8.31 -92.72 -0.77 15.22 16 Total: -1.00 -76.02 313.00 -4.71 -80.73 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.24 Total: 26.21 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 4.26 Total: -41.94 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -4.79 Total: -113.76 kcal Atomic # 8 Polarization: -133.24 SS G_CDS: -6.16 Total: -139.40 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 145.56 SS G_CDS: -0.28 Total: 145.27 kcal Total: -76.02 -4.71 -80.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.830 kcal (2) G-P(sol) polarization free energy of solvation -76.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds