Wall clock time and date at job start Tue Mar 31 2020 00:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.50853 * 2 1 4 4 C 1.53097 * 109.54412 * 120.11058 * 2 1 3 5 5 O 1.43009 * 109.26010 * 176.80508 * 4 2 1 6 6 C 1.43020 * 113.73769 * 301.32800 * 5 4 2 7 7 C 1.53097 * 109.25953 * 58.67094 * 6 5 4 8 8 N 1.47012 * 109.25493 * 303.15421 * 7 6 5 9 9 C 1.46906 * 110.99685 * 182.39521 * 8 7 6 10 10 C 1.53000 * 109.47383 * 46.35876 * 9 8 7 11 11 N 1.46494 * 109.46958 * 180.02562 * 10 9 8 12 12 S 1.65599 * 119.99794 * 165.00253 * 11 10 9 13 13 O 1.42100 * 106.40324 * 311.45790 * 12 11 10 14 14 O 1.42106 * 106.40227 * 178.54304 * 12 11 10 15 15 C 1.76199 * 107.21905 * 64.99959 * 12 11 10 16 16 H 1.07999 * 119.99976 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99614 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86798 * 120.00608 * 359.97438 * 17 15 12 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 H 1.08994 * 109.46916 * 180.08357 * 1 2 3 24 24 H 1.08996 * 109.47020 * 300.09065 * 1 2 3 25 25 H 1.09002 * 109.47072 * 60.08770 * 1 2 3 26 26 H 1.09000 * 109.50167 * 296.74115 * 4 2 1 27 27 H 1.09008 * 109.50621 * 56.86625 * 4 2 1 28 28 H 1.09002 * 109.50423 * 178.60894 * 6 5 4 29 29 H 1.09004 * 109.50452 * 298.73220 * 6 5 4 30 30 H 1.08997 * 109.50803 * 183.21255 * 7 6 5 31 31 H 1.09002 * 109.50536 * 63.08527 * 7 6 5 32 32 H 1.08999 * 109.46744 * 286.35821 * 9 8 7 33 33 H 1.08997 * 109.47044 * 166.36700 * 9 8 7 34 34 H 1.09002 * 109.46720 * 60.00203 * 10 9 8 35 35 H 1.08994 * 109.46982 * 300.00318 * 10 9 8 36 36 H 0.97006 * 120.00361 * 345.00025 * 11 10 9 37 37 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0422 -0.7238 1.2481 5 8 3.4703 -0.7857 1.2048 6 6 3.9828 -1.4564 0.0502 7 6 3.4903 -0.7400 -1.2100 8 7 2.0209 -0.6947 -1.1990 9 6 1.5046 -0.0642 -2.4213 10 6 2.2246 -0.6469 -3.6391 11 7 1.7100 -0.0176 -4.8579 12 16 2.5420 -0.1678 -6.2818 13 8 3.8960 0.1502 -5.9909 14 8 1.7778 0.5142 -7.2669 15 6 2.5153 -1.8732 -6.7241 16 1 2.0105 -2.5875 -6.0906 17 6 3.1381 -2.2955 -7.8795 18 7 3.1186 -3.5685 -8.2093 19 14 4.0094 -1.0597 -8.9763 20 1 3.0533 -0.5290 -9.9809 21 1 4.5280 0.0582 -8.1476 22 1 5.1396 -1.7259 -9.6720 23 1 -0.3633 -1.0276 0.0015 24 1 -0.3633 0.5152 0.8891 25 1 -0.3633 0.5125 -0.8908 26 1 1.7283 -0.1796 2.1388 27 1 1.6347 -1.7345 1.2757 28 1 5.0724 -1.4421 0.0748 29 1 3.6318 -2.4883 0.0431 30 1 3.8313 -1.2808 -2.0928 31 1 3.8857 0.2756 -1.2293 32 1 1.6782 1.0110 -2.3766 33 1 0.4350 -0.2562 -2.5052 34 1 2.0509 -1.7221 -3.6837 35 1 3.2942 -0.4548 -3.5551 36 1 0.8820 0.4870 -4.8308 37 1 3.5564 -3.8656 -9.0223 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193003011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:09 Heat of formation + Delta-G solvation = -117.827643 kcal Electronic energy + Delta-G solvation = -20543.798225 eV Core-core repulsion = 17255.255439 eV Total energy + Delta-G solvation = -3288.542786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.94695 -36.73376 -35.63931 -34.46988 -34.41481 -33.03929 -32.61286 -29.24937 -27.26767 -26.43293 -25.82213 -22.93034 -21.82712 -20.12388 -19.10997 -17.59026 -16.78331 -16.57644 -16.25807 -15.76514 -15.57130 -15.13350 -15.03763 -14.36917 -14.22309 -13.92037 -13.44204 -13.29978 -12.95212 -12.76794 -12.36121 -12.13465 -12.08713 -11.68170 -11.50062 -11.39246 -11.28665 -10.87711 -10.73810 -10.64585 -10.60286 -10.48035 -9.85843 -9.71013 -9.25868 -9.21620 -8.60380 -8.46824 -6.81053 -5.35177 2.04089 3.06659 3.17234 3.26149 3.56957 3.74862 3.94789 4.37583 4.57286 4.58997 4.75616 4.81828 4.96378 5.09765 5.13666 5.23478 5.29423 5.35286 5.39745 5.49250 5.52993 5.61939 5.71882 5.77293 5.81020 5.96954 6.00912 6.10949 6.22833 6.52656 6.85343 6.87430 7.00889 7.46843 7.68961 8.20332 8.69842 10.31266 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031066 B = 0.004509 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.093625 B = 6207.858669 C = 6517.584748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 H 0.049 0.951 4 C 0.070 3.930 5 O -0.388 6.388 6 C 0.064 3.936 7 C 0.004 3.996 8 N -0.529 5.529 9 C 0.048 3.952 10 C 0.122 3.878 11 N -1.125 6.125 12 S 2.677 3.323 13 O -1.010 7.010 14 O -1.011 7.011 15 C -1.016 5.016 16 H 0.122 0.878 17 C 0.153 3.847 18 N -0.823 5.823 19 Si 0.802 3.198 20 H -0.247 1.247 21 H -0.219 1.219 22 H -0.255 1.255 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.405 0.595 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 4.624 16.456 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 H 0.067 0.933 4 C -0.007 4.007 5 O -0.307 6.307 6 C -0.013 4.013 7 C -0.123 4.123 8 N -0.255 5.255 9 C -0.081 4.081 10 C -0.005 4.005 11 N -0.881 5.881 12 S 2.779 3.221 13 O -1.000 7.000 14 O -1.001 7.001 15 C -1.150 5.150 16 H 0.140 0.860 17 C -0.066 4.066 18 N -0.452 5.452 19 Si 0.622 3.378 20 H -0.171 1.171 21 H -0.142 1.142 22 H -0.179 1.179 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.236 0.764 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.391 4.681 16.059 16.897 hybrid contribution -0.098 0.550 -0.805 0.980 sum -2.489 5.231 15.254 16.317 Atomic orbital electron populations 1.21817 0.93453 1.02989 1.02138 1.22346 0.96442 0.96487 0.91261 0.93265 1.22698 0.81080 1.00344 0.96628 1.87966 1.20572 1.78624 1.43516 1.22716 0.99063 0.95764 0.83789 1.23008 0.87984 1.00986 1.00368 1.62276 1.08555 1.53069 1.01611 1.22375 1.00486 0.96629 0.88577 1.21224 0.98278 0.97870 0.83140 1.55449 1.39340 1.68700 1.24611 1.01290 0.72620 0.77253 0.70968 1.93455 1.35775 1.86597 1.84132 1.93421 1.72045 1.77206 1.57440 1.30446 1.48568 1.17326 1.18658 0.86031 1.24429 0.91518 0.95391 0.95309 1.69992 1.36953 1.14639 1.23601 0.87863 0.81883 0.83607 0.84485 1.17053 1.14152 1.17881 0.91404 0.92029 0.91941 0.88720 0.92167 0.88265 0.92013 0.88067 0.93567 0.94103 0.89607 0.90810 0.90508 0.76417 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.90 37.16 0.33 -0.90 16 2 C 0.04 0.45 2.55 -67.60 -0.17 0.28 16 3 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.07 0.68 6.29 37.21 0.23 0.91 16 5 O -0.39 -4.60 10.83 -35.23 -0.38 -4.98 16 6 C 0.06 0.69 7.01 37.21 0.26 0.95 16 7 C 0.00 0.05 4.94 -3.71 -0.02 0.04 16 8 N -0.53 -6.43 4.69 -226.34 -1.06 -7.50 16 9 C 0.05 0.62 4.63 -3.82 -0.02 0.60 16 10 C 0.12 1.99 5.49 -4.04 -0.02 1.97 16 11 N -1.12 -20.87 6.00 -10.62 -0.06 -20.94 16 12 S 2.68 65.92 4.24 -107.50 -0.46 65.47 16 13 O -1.01 -26.67 15.50 -57.17 -0.89 -27.55 16 14 O -1.01 -26.81 16.83 -57.17 -0.96 -27.77 16 15 C -1.02 -28.09 10.26 30.60 0.31 -27.78 16 16 H 0.12 3.39 8.06 -52.49 -0.42 2.97 16 17 C 0.15 4.38 5.47 -17.82 -0.10 4.28 16 18 N -0.82 -23.69 13.96 55.43 0.77 -22.91 16 19 Si 0.80 20.52 26.54 -169.99 -4.51 16.01 16 20 H -0.25 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.22 -5.70 5.61 56.52 0.32 -5.38 16 22 H -0.25 -5.98 7.11 56.52 0.40 -5.58 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.54 6.60 -51.93 -0.34 0.20 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 1.28 6.05 -51.93 -0.31 0.97 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.09 1.01 6.86 -51.93 -0.36 0.65 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.30 5.88 -51.93 -0.31 0.99 16 36 H 0.40 6.32 8.65 -34.47 -0.30 6.02 16 37 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 305.70 15.07 4.61 4.61 Total: -1.00 -33.07 305.70 -7.61 -40.68 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.48 Total: 4.54 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 0.81 Total: -19.65 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.35 Total: -51.35 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -2.23 Total: -60.30 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.51 Total: 16.01 kcal Atomic # 16 Polarization: 65.92 SS G_CDS: -0.46 Total: 65.47 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.07 -7.61 -40.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.147 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds