Wall clock time and date at job start Tue Mar 31 2020 00:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.50853 * 2 1 4 4 C 1.53097 * 109.54412 * 120.11058 * 2 1 3 5 5 O 1.43009 * 109.26010 * 176.80508 * 4 2 1 6 6 C 1.43020 * 113.73769 * 301.32800 * 5 4 2 7 7 C 1.53097 * 109.25953 * 58.67094 * 6 5 4 8 8 N 1.47012 * 109.25493 * 303.15421 * 7 6 5 9 9 C 1.46906 * 110.99685 * 182.39521 * 8 7 6 10 10 C 1.53000 * 109.47383 * 46.35876 * 9 8 7 11 11 N 1.46494 * 109.46958 * 180.02562 * 10 9 8 12 12 S 1.65599 * 119.99794 * 165.00253 * 11 10 9 13 13 O 1.42100 * 106.40324 * 311.45790 * 12 11 10 14 14 O 1.42106 * 106.40227 * 178.54304 * 12 11 10 15 15 C 1.76199 * 107.21905 * 64.99959 * 12 11 10 16 16 H 1.07999 * 119.99976 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99614 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86798 * 120.00608 * 359.97438 * 17 15 12 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 H 1.08994 * 109.46916 * 180.08357 * 1 2 3 24 24 H 1.08996 * 109.47020 * 300.09065 * 1 2 3 25 25 H 1.09002 * 109.47072 * 60.08770 * 1 2 3 26 26 H 1.09000 * 109.50167 * 296.74115 * 4 2 1 27 27 H 1.09008 * 109.50621 * 56.86625 * 4 2 1 28 28 H 1.09002 * 109.50423 * 178.60894 * 6 5 4 29 29 H 1.09004 * 109.50452 * 298.73220 * 6 5 4 30 30 H 1.08997 * 109.50803 * 183.21255 * 7 6 5 31 31 H 1.09002 * 109.50536 * 63.08527 * 7 6 5 32 32 H 1.08999 * 109.46744 * 286.35821 * 9 8 7 33 33 H 1.08997 * 109.47044 * 166.36700 * 9 8 7 34 34 H 1.09002 * 109.46720 * 60.00203 * 10 9 8 35 35 H 1.08994 * 109.46982 * 300.00318 * 10 9 8 36 36 H 0.97006 * 120.00361 * 345.00025 * 11 10 9 37 37 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0422 -0.7238 1.2481 5 8 3.4703 -0.7857 1.2048 6 6 3.9828 -1.4564 0.0502 7 6 3.4903 -0.7400 -1.2100 8 7 2.0209 -0.6947 -1.1990 9 6 1.5046 -0.0642 -2.4213 10 6 2.2246 -0.6469 -3.6391 11 7 1.7100 -0.0176 -4.8579 12 16 2.5420 -0.1678 -6.2818 13 8 3.8960 0.1502 -5.9909 14 8 1.7778 0.5142 -7.2669 15 6 2.5153 -1.8732 -6.7241 16 1 2.0105 -2.5875 -6.0906 17 6 3.1381 -2.2955 -7.8795 18 7 3.1186 -3.5685 -8.2093 19 14 4.0094 -1.0597 -8.9763 20 1 3.0533 -0.5290 -9.9809 21 1 4.5280 0.0582 -8.1476 22 1 5.1396 -1.7259 -9.6720 23 1 -0.3633 -1.0276 0.0015 24 1 -0.3633 0.5152 0.8891 25 1 -0.3633 0.5125 -0.8908 26 1 1.7283 -0.1796 2.1388 27 1 1.6347 -1.7345 1.2757 28 1 5.0724 -1.4421 0.0748 29 1 3.6318 -2.4883 0.0431 30 1 3.8313 -1.2808 -2.0928 31 1 3.8857 0.2756 -1.2293 32 1 1.6782 1.0110 -2.3766 33 1 0.4350 -0.2562 -2.5052 34 1 2.0509 -1.7221 -3.6837 35 1 3.2942 -0.4548 -3.5551 36 1 0.8820 0.4870 -4.8308 37 1 3.5564 -3.8656 -9.0223 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193003011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:08 Heat of formation + Delta-G solvation = -146.675560 kcal Electronic energy + Delta-G solvation = -20545.049164 eV Core-core repulsion = 17255.255439 eV Total energy + Delta-G solvation = -3289.793725 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.83499 -37.89266 -37.58397 -36.51749 -35.69199 -35.18087 -33.51955 -30.32890 -28.57553 -28.08827 -26.89255 -23.81442 -22.93128 -21.23129 -20.85756 -19.52554 -18.65774 -17.65569 -17.38712 -17.12058 -16.78508 -16.54281 -16.10066 -15.80218 -15.54874 -15.22778 -15.12927 -14.90715 -14.63836 -13.75496 -13.60309 -13.42170 -13.22312 -13.06222 -12.85141 -12.75186 -12.72334 -12.62368 -12.53424 -12.09538 -11.85019 -11.73339 -11.45999 -11.33653 -11.22364 -10.58190 -10.28526 -9.41788 -8.96484 -7.52916 0.11593 1.05545 1.14746 1.21905 1.89330 2.40546 2.43014 2.82934 2.96351 3.28918 3.70657 3.82394 3.91986 4.04347 4.17552 4.21621 4.24298 4.29595 4.42158 4.49889 4.61704 4.69710 4.75636 4.84169 4.89090 4.90329 4.94060 5.05902 5.12540 5.34299 5.38617 5.87991 5.96905 6.01390 6.18326 6.27746 6.53750 8.21120 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031066 B = 0.004509 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.093625 B = 6207.858669 C = 6517.584748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.042 3.958 3 H 0.044 0.956 4 C 0.067 3.933 5 O -0.403 6.403 6 C 0.066 3.934 7 C 0.001 3.999 8 N -0.535 5.535 9 C 0.057 3.943 10 C 0.116 3.884 11 N -1.109 6.109 12 S 2.701 3.299 13 O -1.028 7.028 14 O -1.029 7.029 15 C -1.038 5.038 16 H 0.107 0.893 17 C 0.109 3.891 18 N -0.853 5.853 19 Si 0.824 3.176 20 H -0.240 1.240 21 H -0.227 1.227 22 H -0.220 1.220 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.421 0.579 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 5.464 17.493 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 H 0.062 0.938 4 C -0.010 4.010 5 O -0.322 6.322 6 C -0.011 4.011 7 C -0.127 4.127 8 N -0.262 5.262 9 C -0.072 4.072 10 C -0.010 4.010 11 N -0.870 5.870 12 S 2.800 3.200 13 O -1.018 7.018 14 O -1.019 7.019 15 C -1.170 5.170 16 H 0.125 0.875 17 C -0.108 4.108 18 N -0.483 5.483 19 Si 0.641 3.359 20 H -0.163 1.163 21 H -0.150 1.150 22 H -0.142 1.142 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.135 0.865 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.256 0.744 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.824 5.499 17.085 18.169 hybrid contribution -0.018 0.265 -1.018 1.052 sum -2.842 5.764 16.068 17.305 Atomic orbital electron populations 1.21806 0.91846 1.03191 1.03139 1.22453 0.97702 0.95986 0.90494 0.93794 1.22878 0.80069 1.00843 0.97220 1.87947 1.21851 1.78747 1.43659 1.22745 0.99875 0.95525 0.82976 1.23018 0.88291 1.00647 1.00735 1.62323 1.08431 1.53442 1.01966 1.22271 1.00819 0.96682 0.87393 1.21392 0.98414 0.97699 0.83515 1.54919 1.39779 1.68754 1.23580 1.00403 0.72367 0.75514 0.71667 1.93429 1.37276 1.86271 1.84778 1.93387 1.72347 1.76894 1.59307 1.30962 1.48147 1.19399 1.18537 0.87488 1.25164 0.92266 0.96806 0.96589 1.70015 1.37955 1.15672 1.24692 0.87498 0.82540 0.82181 0.83643 1.16330 1.14973 1.14195 0.91555 0.89971 0.92062 0.86503 0.91891 0.86993 0.91805 0.89134 0.94212 0.93469 0.88029 0.91399 0.91250 0.74387 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.90 71.98 0.64 -1.39 16 2 C 0.04 0.78 2.55 44.93 0.11 0.89 16 3 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 4 C 0.07 1.15 6.29 72.01 0.45 1.61 16 5 O -0.40 -8.93 10.83 -148.98 -1.61 -10.54 16 6 C 0.07 1.36 7.01 72.01 0.50 1.86 16 7 C 0.00 0.03 4.94 86.31 0.43 0.46 16 8 N -0.53 -12.29 4.69 -869.99 -4.08 -16.37 16 9 C 0.06 1.38 4.63 86.30 0.40 1.78 16 10 C 0.12 3.71 5.49 86.38 0.47 4.19 16 11 N -1.11 -40.02 6.00 -187.50 -1.12 -41.14 16 12 S 2.70 131.64 4.24 -56.49 -0.24 131.40 16 13 O -1.03 -53.78 15.50 -128.00 -1.98 -55.77 16 14 O -1.03 -53.68 16.83 -128.00 -2.15 -55.84 16 15 C -1.04 -57.88 10.26 67.73 0.69 -57.19 16 16 H 0.11 6.10 8.06 -2.91 -0.02 6.07 16 17 C 0.11 6.21 5.47 84.66 0.46 6.68 16 18 N -0.85 -49.26 13.96 21.45 0.30 -48.96 16 19 Si 0.82 40.86 26.54 68.60 1.82 42.68 16 20 H -0.24 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.23 -11.53 5.61 99.48 0.56 -10.97 16 22 H -0.22 -9.60 7.11 99.48 0.71 -8.89 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.89 6.60 -2.39 -0.02 0.88 16 26 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 2.31 6.05 -2.39 -0.01 2.30 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 1.09 8.08 -2.39 -0.02 1.07 16 33 H 0.10 2.14 6.86 -2.39 -0.02 2.13 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 2.34 5.88 -2.39 -0.01 2.32 16 36 H 0.42 12.41 8.65 -96.74 -0.84 11.57 16 37 H 0.29 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -69.27 305.70 -4.81 -74.08 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.09 Total: 21.55 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 4.17 Total: -41.10 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -4.90 Total: -106.47 kcal Atomic # 8 Polarization: -116.40 SS G_CDS: -5.75 Total: -122.15 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.82 Total: 42.68 kcal Atomic # 16 Polarization: 131.64 SS G_CDS: -0.24 Total: 131.40 kcal Total: -69.27 -4.81 -74.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.595 kcal (2) G-P(sol) polarization free energy of solvation -69.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds