Wall clock time and date at job start Tue Mar 31 2020 00:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.00082 * 2 1 4 4 C 1.54337 * 109.77943 * 121.16512 * 2 1 3 5 5 H 1.08998 * 110.66918 * 215.87889 * 4 2 1 6 6 O 1.42897 * 110.85032 * 339.02991 * 4 2 1 7 7 C 1.55160 * 103.01717 * 97.50003 * 4 2 1 8 8 C 1.54907 * 101.58395 * 35.30664 * 7 4 2 9 9 N 1.47028 * 109.88255 * 238.90637 * 2 1 3 10 10 S 1.65600 * 125.64752 * 59.56202 * 9 2 1 11 11 O 1.42101 * 106.40108 * 342.24906 * 10 9 2 12 12 O 1.42100 * 106.39830 * 209.33350 * 10 9 2 13 13 N 1.65592 * 107.21887 * 95.79454 * 10 9 2 14 14 C 1.46502 * 120.00016 * 94.97833 * 13 10 9 15 15 C 1.46498 * 120.00183 * 274.97469 * 13 10 9 16 16 C 1.50701 * 109.47122 * 265.00245 * 15 13 10 17 17 H 1.08005 * 119.99929 * 0.02562 * 16 15 13 18 18 C 1.37881 * 120.00012 * 179.97438 * 16 15 13 19 19 N 1.31518 * 119.99873 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99980 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.46945 * 89.99932 * 20 18 16 22 22 H 1.48497 * 109.47210 * 209.99752 * 20 18 16 23 23 H 1.48498 * 109.47027 * 329.99959 * 20 18 16 24 24 H 1.09000 * 109.46715 * 175.04730 * 1 2 3 25 25 H 1.08993 * 109.47035 * 295.04470 * 1 2 3 26 26 H 1.08998 * 109.47066 * 55.04437 * 1 2 3 27 27 H 0.96697 * 113.99838 * 175.14292 * 6 4 2 28 28 H 1.09002 * 110.99778 * 277.22871 * 7 4 2 29 29 H 1.08999 * 111.00181 * 153.38329 * 7 4 2 30 30 H 1.09002 * 110.36095 * 204.15003 * 8 7 4 31 31 H 1.08997 * 110.45727 * 81.87937 * 8 7 4 32 32 H 1.08997 * 109.47664 * 84.87633 * 14 13 10 33 33 H 1.09006 * 109.46873 * 324.87406 * 14 13 10 34 34 H 1.09000 * 109.46750 * 204.88168 * 14 13 10 35 35 H 1.09002 * 109.46934 * 25.00125 * 15 13 10 36 36 H 1.08996 * 109.47699 * 145.00430 * 15 13 10 37 37 H 0.96998 * 119.99705 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0523 -0.7516 1.2427 5 1 2.9601 -0.2828 1.6225 6 8 1.0510 -0.8087 2.2606 7 6 2.3562 -2.1697 0.6914 8 6 2.8614 -1.8465 -0.7369 9 7 2.0301 -0.7140 -1.1840 10 16 1.7172 -0.3090 -2.7589 11 8 0.5851 0.5496 -2.7351 12 8 1.7583 -1.5204 -3.5005 13 7 2.9889 0.6085 -3.2910 14 6 4.0967 -0.0233 -4.0121 15 6 3.0062 2.0518 -3.0407 16 6 2.4490 2.7761 -4.2390 17 1 2.1149 2.2172 -5.1006 18 6 2.3647 4.1524 -4.2349 19 7 1.8788 4.7845 -5.2808 20 14 2.9405 5.1189 -2.7438 21 1 4.3788 5.4555 -2.8973 22 1 2.1489 6.3701 -2.6290 23 1 2.7517 4.2996 -1.5197 24 1 -0.3633 -1.0238 -0.0887 25 1 -0.3633 0.4350 0.9310 26 1 -0.3633 0.5888 -0.8423 27 1 1.3039 -1.3341 3.0320 28 1 1.4522 -2.7778 0.6578 29 1 3.1329 -2.6592 1.2790 30 1 2.7179 -2.7048 -1.3933 31 1 3.9126 -1.5594 -0.7133 32 1 3.8441 -0.1019 -5.0695 33 1 4.2738 -1.0191 -3.6058 34 1 4.9965 0.5812 -3.8974 35 1 2.3972 2.2760 -2.1650 36 1 4.0312 2.3776 -2.8636 37 1 1.8198 5.7527 -5.2781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211868191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:51 Heat of formation + Delta-G solvation = -111.178123 kcal Electronic energy + Delta-G solvation = -21463.052724 eV Core-core repulsion = 18174.798283 eV Total energy + Delta-G solvation = -3288.254441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.30253 -36.71873 -35.75193 -35.64420 -35.22008 -32.38607 -31.16337 -29.82903 -28.40634 -25.54988 -25.12128 -22.32718 -21.93147 -20.83006 -18.49405 -17.62616 -17.39157 -16.91510 -16.66109 -15.67513 -14.98482 -14.64043 -14.42547 -14.22602 -13.95931 -13.58890 -13.07151 -12.93403 -12.62472 -12.44011 -12.41574 -12.04620 -11.84321 -11.78948 -11.56700 -11.32602 -11.31418 -11.17341 -11.05222 -10.62621 -10.57515 -10.35575 -10.22734 -10.12395 -9.55991 -8.96126 -8.59673 -8.13839 -6.08128 -4.07304 1.03885 3.24582 3.30819 3.32390 3.38105 3.90505 3.99915 4.37507 4.42366 4.48261 4.85687 4.89350 5.10556 5.18717 5.30564 5.39397 5.47423 5.51302 5.55997 5.66072 5.86430 5.92879 5.95692 6.16969 6.21575 6.34133 6.38737 6.54268 6.68730 6.71562 7.04227 7.36870 7.43630 7.57002 8.49084 8.97264 9.50554 11.05581 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.007061 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.494744 B = 3964.577703 C = 4588.714030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.158 3.842 3 H 0.081 0.919 4 C 0.099 3.901 5 H 0.072 0.928 6 O -0.553 6.553 7 C -0.161 4.161 8 C 0.117 3.883 9 N -1.020 6.020 10 S 2.795 3.205 11 O -0.950 6.950 12 O -0.989 6.989 13 N -0.993 5.993 14 C 0.107 3.893 15 C 0.229 3.771 16 C -0.530 4.530 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.873 3.127 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.265 1.265 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.377 0.623 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.028 0.972 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 -13.066 14.972 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.051 3.949 3 H 0.099 0.901 4 C 0.038 3.962 5 H 0.090 0.910 6 O -0.358 6.358 7 C -0.200 4.200 8 C -0.009 4.009 9 N -0.859 5.859 10 S 2.804 3.196 11 O -0.933 6.933 12 O -0.973 6.973 13 N -0.834 5.834 14 C -0.039 4.039 15 C 0.106 3.894 16 C -0.569 4.569 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.700 3.300 21 H -0.201 1.201 22 H -0.208 1.208 23 H -0.190 1.190 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.224 0.776 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.597 -12.718 13.864 19.155 hybrid contribution 1.065 0.425 1.215 1.671 sum 4.663 -12.293 15.079 20.006 Atomic orbital electron populations 1.22228 0.93746 1.02824 1.04090 1.21093 0.95757 0.94968 0.83062 0.90124 1.22795 0.90317 0.94827 0.88235 0.91006 1.86551 1.43120 1.75391 1.30736 1.23471 1.02393 0.97831 0.96317 1.21863 0.94356 0.89203 0.95440 1.59549 1.64106 1.39360 1.22852 1.01673 0.73742 0.72678 0.71473 1.93612 1.47511 1.66776 1.85432 1.93535 1.87358 1.47066 1.69327 1.57544 1.38369 1.18792 1.68724 1.21246 0.89931 0.95888 0.96826 1.19452 0.97273 0.75240 0.97481 1.21366 1.41938 0.91813 1.01799 0.90415 1.24877 0.94712 0.97523 0.95895 1.69897 1.45417 1.08682 1.29275 0.86907 0.78990 0.80253 0.83877 1.20081 1.20808 1.18956 0.92726 0.90779 0.89528 0.77610 0.89712 0.90030 0.89915 0.91574 0.92812 0.92975 0.91186 0.95184 0.95408 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 8.44 37.16 0.31 -2.33 16 2 C 0.16 2.28 3.65 -66.94 -0.24 2.03 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.10 1.02 4.18 -24.89 -0.10 0.91 16 5 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 6 O -0.55 -5.36 11.68 -35.23 -0.41 -5.77 16 7 C -0.16 -1.43 6.81 -24.58 -0.17 -1.60 16 8 C 0.12 1.34 7.14 -2.53 -0.02 1.32 16 9 N -1.02 -15.70 3.47 -104.41 -0.36 -16.06 16 10 S 2.79 56.13 6.18 -107.50 -0.66 55.46 16 11 O -0.95 -22.52 14.45 -57.17 -0.83 -23.34 16 12 O -0.99 -20.82 16.58 -57.17 -0.95 -21.77 16 13 N -0.99 -20.38 3.23 -123.05 -0.40 -20.78 16 14 C 0.11 1.83 10.27 59.85 0.61 2.44 16 15 C 0.23 5.39 4.17 -5.19 -0.02 5.37 16 16 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 17 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 19 N -0.89 -27.65 13.96 55.43 0.77 -26.88 16 20 Si 0.87 21.07 27.47 -169.99 -4.67 16.40 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.06 7.31 -51.93 -0.38 0.68 16 26 H 0.09 1.58 5.95 -51.93 -0.31 1.27 16 27 H 0.38 1.85 9.11 45.56 0.42 2.26 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.95 7.82 -51.93 -0.41 0.54 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.73 7.85 -51.93 -0.41 0.32 16 34 H 0.07 1.07 7.89 -51.93 -0.41 0.66 16 35 H 0.03 0.71 6.80 -51.93 -0.35 0.36 16 36 H 0.03 0.61 7.37 -51.93 -0.38 0.23 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -35.61 311.31 -7.66 -43.27 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.78 Total: 0.17 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.07 Total: -5.39 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.01 Total: -63.72 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -2.19 Total: -50.88 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: 56.13 SS G_CDS: -0.66 Total: 55.46 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.61 -7.66 -43.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211868191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.911 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds