Wall clock time and date at job start Tue Mar 31 2020 00:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.00082 * 2 1 4 4 C 1.54337 * 109.77943 * 121.16512 * 2 1 3 5 5 H 1.08998 * 110.66918 * 215.87889 * 4 2 1 6 6 O 1.42897 * 110.85032 * 339.02991 * 4 2 1 7 7 C 1.55160 * 103.01717 * 97.50003 * 4 2 1 8 8 C 1.54907 * 101.58395 * 35.30664 * 7 4 2 9 9 N 1.47028 * 109.88255 * 238.90637 * 2 1 3 10 10 S 1.65600 * 125.64752 * 59.56202 * 9 2 1 11 11 O 1.42101 * 106.40108 * 342.24906 * 10 9 2 12 12 O 1.42100 * 106.39830 * 209.33350 * 10 9 2 13 13 N 1.65592 * 107.21887 * 95.79454 * 10 9 2 14 14 C 1.46502 * 120.00016 * 94.97833 * 13 10 9 15 15 C 1.46498 * 120.00183 * 274.97469 * 13 10 9 16 16 C 1.50701 * 109.47122 * 265.00245 * 15 13 10 17 17 H 1.08005 * 119.99929 * 0.02562 * 16 15 13 18 18 C 1.37881 * 120.00012 * 179.97438 * 16 15 13 19 19 N 1.31518 * 119.99873 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99980 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.46945 * 89.99932 * 20 18 16 22 22 H 1.48497 * 109.47210 * 209.99752 * 20 18 16 23 23 H 1.48498 * 109.47027 * 329.99959 * 20 18 16 24 24 H 1.09000 * 109.46715 * 175.04730 * 1 2 3 25 25 H 1.08993 * 109.47035 * 295.04470 * 1 2 3 26 26 H 1.08998 * 109.47066 * 55.04437 * 1 2 3 27 27 H 0.96697 * 113.99838 * 175.14292 * 6 4 2 28 28 H 1.09002 * 110.99778 * 277.22871 * 7 4 2 29 29 H 1.08999 * 111.00181 * 153.38329 * 7 4 2 30 30 H 1.09002 * 110.36095 * 204.15003 * 8 7 4 31 31 H 1.08997 * 110.45727 * 81.87937 * 8 7 4 32 32 H 1.08997 * 109.47664 * 84.87633 * 14 13 10 33 33 H 1.09006 * 109.46873 * 324.87406 * 14 13 10 34 34 H 1.09000 * 109.46750 * 204.88168 * 14 13 10 35 35 H 1.09002 * 109.46934 * 25.00125 * 15 13 10 36 36 H 1.08996 * 109.47699 * 145.00430 * 15 13 10 37 37 H 0.96998 * 119.99705 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0523 -0.7516 1.2427 5 1 2.9601 -0.2828 1.6225 6 8 1.0510 -0.8087 2.2606 7 6 2.3562 -2.1697 0.6914 8 6 2.8614 -1.8465 -0.7369 9 7 2.0301 -0.7140 -1.1840 10 16 1.7172 -0.3090 -2.7589 11 8 0.5851 0.5496 -2.7351 12 8 1.7583 -1.5204 -3.5005 13 7 2.9889 0.6085 -3.2910 14 6 4.0967 -0.0233 -4.0121 15 6 3.0062 2.0518 -3.0407 16 6 2.4490 2.7761 -4.2390 17 1 2.1149 2.2172 -5.1006 18 6 2.3647 4.1524 -4.2349 19 7 1.8788 4.7845 -5.2808 20 14 2.9405 5.1189 -2.7438 21 1 4.3788 5.4555 -2.8973 22 1 2.1489 6.3701 -2.6290 23 1 2.7517 4.2996 -1.5197 24 1 -0.3633 -1.0238 -0.0887 25 1 -0.3633 0.4350 0.9310 26 1 -0.3633 0.5888 -0.8423 27 1 1.3039 -1.3341 3.0320 28 1 1.4522 -2.7778 0.6578 29 1 3.1329 -2.6592 1.2790 30 1 2.7179 -2.7048 -1.3933 31 1 3.9126 -1.5594 -0.7133 32 1 3.8441 -0.1019 -5.0695 33 1 4.2738 -1.0191 -3.6058 34 1 4.9965 0.5812 -3.8974 35 1 2.3972 2.2760 -2.1650 36 1 4.0312 2.3776 -2.8636 37 1 1.8198 5.7527 -5.2781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211868191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:51 Heat of formation + Delta-G solvation = -141.942988 kcal Electronic energy + Delta-G solvation = -21464.386789 eV Core-core repulsion = 18174.798283 eV Total energy + Delta-G solvation = -3289.588506 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21617 -38.38894 -37.33102 -36.91561 -36.56611 -34.52653 -32.17209 -30.83391 -30.30440 -26.88820 -26.43601 -23.88950 -23.25180 -21.81238 -19.88813 -19.22560 -18.60455 -18.50958 -18.13813 -17.23431 -16.42178 -15.90510 -15.68893 -15.45727 -15.14796 -14.78123 -14.61362 -14.43026 -14.32989 -13.99291 -13.51857 -13.42507 -13.21759 -13.17425 -13.12733 -13.04734 -12.65433 -12.39153 -12.35774 -12.18760 -12.11520 -12.01593 -11.73133 -11.39525 -10.82411 -10.78974 -10.11614 -9.82868 -8.30070 -6.36327 -0.49481 1.34697 1.40086 1.49128 1.96018 2.34458 2.50542 3.02453 3.04581 3.44427 3.58465 3.70613 3.97276 4.07446 4.27447 4.34041 4.50538 4.54935 4.60686 4.69153 4.73389 4.76949 4.82127 4.91143 5.00296 5.04335 5.18397 5.21482 5.29811 5.43147 5.46962 5.48629 5.76710 6.29064 6.66422 7.00446 7.26453 8.87890 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.007061 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.494744 B = 3964.577703 C = 4588.714030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.142 3.858 3 H 0.073 0.927 4 C 0.111 3.889 5 H 0.098 0.902 6 O -0.569 6.569 7 C -0.147 4.147 8 C 0.103 3.897 9 N -1.014 6.014 10 S 2.805 3.195 11 O -0.998 6.998 12 O -1.006 7.006 13 N -1.001 6.001 14 C 0.098 3.902 15 C 0.237 3.763 16 C -0.544 4.544 17 H 0.024 0.976 18 C 0.005 3.995 19 N -0.949 5.949 20 Si 0.947 3.053 21 H -0.251 1.251 22 H -0.284 1.284 23 H -0.239 1.239 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.400 0.600 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.034 0.966 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.177 -14.051 18.716 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.036 3.964 3 H 0.091 0.909 4 C 0.050 3.950 5 H 0.116 0.884 6 O -0.378 6.378 7 C -0.187 4.187 8 C -0.021 4.021 9 N -0.857 5.857 10 S 2.815 3.185 11 O -0.982 6.982 12 O -0.990 6.990 13 N -0.842 5.842 14 C -0.048 4.048 15 C 0.112 3.888 16 C -0.583 4.583 17 H 0.042 0.958 18 C -0.192 4.192 19 N -0.590 5.590 20 Si 0.768 3.232 21 H -0.176 1.176 22 H -0.210 1.210 23 H -0.162 1.162 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.251 0.749 28 H 0.096 0.904 29 H 0.141 0.859 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.058 -13.758 17.606 23.150 hybrid contribution 0.238 0.618 0.003 0.662 sum 6.297 -13.140 17.609 22.855 Atomic orbital electron populations 1.22158 0.95267 1.02215 1.02998 1.21336 0.94742 0.95536 0.84747 0.90914 1.22669 0.90653 0.94974 0.86657 0.88412 1.86492 1.43454 1.76200 1.31634 1.23469 1.03351 0.97135 0.94696 1.22313 0.95252 0.87627 0.96945 1.59069 1.64713 1.40570 1.21310 1.01019 0.73079 0.71963 0.72409 1.93556 1.49994 1.68050 1.86581 1.93499 1.87491 1.47331 1.70683 1.57502 1.39232 1.17697 1.69756 1.21505 0.89567 0.97936 0.95744 1.19235 0.98150 0.76496 0.94878 1.21692 1.42056 0.92370 1.02186 0.95780 1.25986 0.94707 0.98812 0.99733 1.70082 1.47398 1.09223 1.32247 0.85736 0.79438 0.78225 0.79770 1.17556 1.20976 1.16214 0.92600 0.89695 0.93191 0.74890 0.90398 0.85880 0.90247 0.88892 0.94746 0.89555 0.89058 0.94943 0.92530 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.17 8.44 71.98 0.61 -4.56 16 2 C 0.14 3.85 3.65 45.35 0.17 4.01 16 3 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.11 1.83 4.18 31.79 0.13 1.96 16 5 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 6 O -0.57 -8.86 11.68 -148.98 -1.74 -10.60 16 7 C -0.15 -1.94 6.81 31.99 0.22 -1.73 16 8 C 0.10 1.99 7.14 86.85 0.62 2.61 16 9 N -1.01 -29.56 3.47 -484.24 -1.68 -31.24 16 10 S 2.80 113.70 6.18 -56.49 -0.35 113.35 16 11 O -1.00 -49.51 14.45 -128.00 -1.85 -51.35 16 12 O -1.01 -42.72 16.58 -128.00 -2.12 -44.84 16 13 N -1.00 -40.74 3.23 -543.22 -1.75 -42.50 16 14 C 0.10 3.21 10.27 127.77 1.31 4.52 16 15 C 0.24 10.99 4.17 85.63 0.36 11.35 16 16 C -0.54 -32.24 9.94 25.60 0.25 -31.99 16 17 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 18 C 0.01 0.31 5.47 84.65 0.46 0.77 16 19 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 20 Si 0.95 42.86 27.47 68.60 1.88 44.75 16 21 H -0.25 -10.40 7.11 99.48 0.71 -9.70 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 2.36 7.31 -2.39 -0.02 2.34 16 26 H 0.05 1.90 5.95 -2.39 -0.01 1.88 16 27 H 0.40 2.10 9.11 -74.06 -0.67 1.42 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 1.60 7.82 -2.39 -0.02 1.58 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 2.21 7.85 -2.38 -0.02 2.20 16 34 H 0.09 2.58 7.89 -2.39 -0.02 2.56 16 35 H 0.03 1.50 6.80 -2.39 -0.02 1.48 16 36 H 0.06 2.32 7.37 -2.39 -0.02 2.30 16 37 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -82.54 311.31 -2.84 -85.38 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.34 Total: 10.75 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 4.13 Total: -13.05 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -3.13 Total: -134.38 kcal Atomic # 8 Polarization: -101.09 SS G_CDS: -5.71 Total: -106.80 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.75 kcal Atomic # 16 Polarization: 113.70 SS G_CDS: -0.35 Total: 113.35 kcal Total: -82.54 -2.84 -85.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211868191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.560 kcal (2) G-P(sol) polarization free energy of solvation -82.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds