Wall clock time and date at job start Tue Mar 31 2020 00:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08993 * 109.46761 * 29.43464 * 3 2 1 5 5 O 1.42895 * 109.47029 * 269.43066 * 3 2 1 6 6 C 1.35677 * 116.99738 * 84.74137 * 5 3 2 7 7 C 1.39308 * 119.82090 * 354.57691 * 6 5 3 8 8 C 1.36436 * 120.18973 * 179.97438 * 7 6 5 9 9 C 1.40835 * 119.80817 * 0.28070 * 8 7 6 10 10 C 1.41209 * 120.17730 * 179.72231 * 9 8 7 11 11 H 1.08006 * 120.00371 * 27.53298 * 10 9 8 12 12 C 1.39892 * 120.00082 * 207.53578 * 10 9 8 13 13 N 1.30884 * 119.99826 * 11.22085 * 12 10 9 14 14 Si 1.86802 * 120.00055 * 191.23008 * 12 10 9 15 15 H 1.48496 * 109.47293 * 89.99470 * 14 12 10 16 16 H 1.48501 * 109.46831 * 209.99701 * 14 12 10 17 17 H 1.48506 * 109.46996 * 329.99326 * 14 12 10 18 18 C 1.40831 * 119.64193 * 359.42504 * 9 8 7 19 19 C 1.36439 * 119.81164 * 0.57639 * 18 9 8 20 20 C 1.50700 * 109.46774 * 149.43071 * 3 2 1 21 21 C 1.38240 * 119.99834 * 84.72970 * 20 3 2 22 22 C 1.38234 * 119.99918 * 179.78593 * 21 20 3 23 23 C 1.38230 * 120.00224 * 0.43720 * 22 21 20 24 24 C 1.38237 * 119.99658 * 359.81323 * 23 22 21 25 25 C 1.38228 * 120.00237 * 359.97438 * 24 23 22 26 26 H 4.18737 * 15.04103 * 0.02562 * 4 2 1 27 27 H 1.08010 * 119.90459 * 359.97438 * 7 6 5 28 28 H 1.08002 * 120.09500 * 180.02562 * 8 7 6 29 29 H 0.96997 * 119.99589 * 180.02562 * 13 12 10 30 30 H 1.07999 * 120.09900 * 180.29632 * 18 9 8 31 31 H 1.07995 * 119.90966 * 179.70481 * 19 18 9 32 32 H 1.08009 * 119.99965 * 359.97438 * 21 20 3 33 33 H 1.08006 * 119.99657 * 180.27386 * 22 21 20 34 34 H 1.07997 * 120.00164 * 179.83661 * 23 22 21 35 35 H 1.08004 * 119.99981 * 179.97438 * 24 23 22 36 36 H 1.08004 * 120.00099 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0097 -0.8942 -0.5050 5 8 3.1224 0.0143 1.3472 6 6 3.2237 -1.1833 1.9767 7 6 2.7639 -2.3380 1.3473 8 6 2.8626 -3.5462 1.9733 9 6 3.4259 -3.6233 3.2618 10 6 3.5265 -4.8689 3.9192 11 1 3.6065 -5.7789 3.3429 12 6 3.5224 -4.9245 5.3170 13 7 3.2074 -3.8619 6.0132 14 14 3.9669 -6.5151 6.1898 15 1 5.4301 -6.5502 6.4403 16 1 3.2413 -6.5893 7.4834 17 1 3.5823 -7.6704 5.3396 18 6 3.8940 -2.4522 3.8884 19 6 3.7878 -1.2517 3.2487 20 6 3.1478 1.2243 -0.7226 21 6 3.2739 2.4232 -0.0462 22 6 3.7383 3.5446 -0.7079 23 6 4.0680 3.4692 -2.0482 24 6 3.9369 2.2715 -2.7259 25 6 3.4767 1.1491 -2.0631 26 1 -1.0500 -0.0006 -0.0009 27 1 2.3281 -2.2764 0.3610 28 1 2.5061 -4.4405 1.4837 29 1 3.2050 -3.9004 6.9824 30 1 4.3316 -2.5034 4.8745 31 1 4.1419 -0.3520 3.7298 32 1 3.0125 2.4831 1.0001 33 1 3.8410 4.4802 -0.1783 34 1 4.4283 4.3459 -2.5658 35 1 4.1941 2.2126 -3.7732 36 1 3.3740 0.2134 -2.5927 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:04 Heat of formation + Delta-G solvation = 65.539289 kcal Electronic energy + Delta-G solvation = -19655.978066 eV Core-core repulsion = 16650.791979 eV Total energy + Delta-G solvation = -3005.186087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.75790 -38.52029 -36.54356 -33.68652 -33.00100 -31.26081 -30.90424 -29.73330 -28.98479 -26.59248 -24.75145 -22.58548 -21.94577 -20.85039 -20.69824 -18.39744 -17.42827 -17.06286 -16.74883 -15.46935 -15.23082 -15.11085 -14.70280 -14.29121 -13.94396 -13.39189 -13.26956 -12.94230 -12.72909 -12.27286 -12.19447 -12.05840 -11.52115 -11.38099 -11.11354 -11.05024 -10.97423 -10.76134 -10.39161 -10.09345 -9.99362 -9.79803 -9.30584 -9.10049 -8.92838 -8.81502 -7.64786 -7.01301 -6.68003 -4.28460 1.26826 1.40333 2.76793 2.84649 2.92902 3.02813 3.09321 3.12584 3.20001 3.74994 3.96396 4.11534 4.57988 4.67359 4.86796 4.93473 5.04142 5.14366 5.40955 5.52343 5.61818 5.65973 5.89587 6.03560 6.06858 6.08559 6.19839 6.41366 6.48990 6.55758 6.73971 6.95853 6.97364 7.11141 7.19399 7.45482 7.55506 7.77541 7.77732 8.00515 8.20751 8.40440 8.63963 8.90892 8.97261 10.26448 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.035416 B = 0.003490 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.413734 B = 8021.286610 C = 8212.357906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.197 4.197 3 C 0.241 3.759 4 H 0.096 0.904 5 O -0.306 6.306 6 C -0.010 4.010 7 C -0.165 4.165 8 C -0.193 4.193 9 C 0.089 3.911 10 C -0.463 4.463 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.806 5.806 14 Si 0.911 3.089 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.264 1.264 18 C -0.129 4.129 19 C -0.118 4.118 20 C -0.076 4.076 21 C -0.085 4.085 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.106 4.106 26 H 0.218 0.782 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.279 0.721 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 9.858 -11.371 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.184 3.816 4 H 0.114 0.886 5 O -0.221 6.221 6 C -0.052 4.052 7 C -0.183 4.183 8 C -0.213 4.213 9 C 0.086 3.914 10 C -0.493 4.493 11 H 0.094 0.906 12 C -0.144 4.144 13 N -0.433 5.433 14 Si 0.736 3.264 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.148 4.148 19 C -0.137 4.137 20 C -0.076 4.076 21 C -0.103 4.103 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.124 4.124 26 H 0.235 0.765 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.116 0.884 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.170 10.100 -11.033 14.959 hybrid contribution -0.283 -0.898 0.381 1.016 sum -0.453 9.202 -10.652 14.084 Atomic orbital electron populations 1.24875 0.95771 1.00726 0.98873 1.23488 0.94651 1.00338 1.01270 1.17498 0.83175 0.96384 0.84544 0.88631 1.85974 1.81985 1.29994 1.24194 1.18618 1.09056 0.82884 0.94692 1.20405 1.05337 0.93370 0.99225 1.20606 1.06996 0.95396 0.98326 1.17617 0.89289 0.93612 0.90848 1.19477 1.44933 0.93803 0.91086 0.90616 1.25871 0.92566 0.97957 0.97985 1.69798 1.35600 1.29832 1.08069 0.86268 0.79362 0.82029 0.78744 1.19390 1.20379 1.18771 1.21059 1.02021 0.91021 1.00723 1.19849 1.03212 0.98033 0.92600 1.19519 1.00066 0.94139 0.93842 1.21095 0.97115 0.91670 1.00448 1.21173 0.99835 0.98496 0.94769 1.21161 1.00092 0.97764 0.94772 1.21046 1.00471 0.92849 0.99850 1.20951 0.98852 0.99056 0.93528 0.76541 0.88745 0.88662 0.91006 0.85278 0.88390 0.85216 0.85955 0.86180 0.85931 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 19.25 29.55 0.57 -2.24 16 2 C -0.20 -3.40 11.89 -37.12 -0.44 -3.84 16 3 C 0.24 4.18 2.33 -30.67 -0.07 4.11 16 4 H 0.10 1.61 6.21 -51.93 -0.32 1.29 16 5 O -0.31 -6.35 8.91 -18.73 -0.17 -6.51 16 6 C -0.01 -0.23 6.61 -38.78 -0.26 -0.48 16 7 C -0.16 -3.78 8.62 -39.83 -0.34 -4.12 16 8 C -0.19 -4.79 9.74 -39.25 -0.38 -5.18 16 9 C 0.09 2.37 5.56 -106.81 -0.59 1.78 16 10 C -0.46 -12.32 9.05 -37.84 -0.34 -12.66 16 11 H 0.08 1.94 7.87 -52.48 -0.41 1.52 16 12 C 0.07 1.82 5.25 -17.34 -0.09 1.73 16 13 N -0.81 -21.00 10.80 55.55 0.60 -20.40 16 14 Si 0.91 18.85 29.57 -169.99 -5.03 13.82 16 15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 16 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 17 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 18 C -0.13 -3.37 8.61 -39.25 -0.34 -3.71 16 19 C -0.12 -2.87 9.92 -39.83 -0.40 -3.26 16 20 C -0.08 -1.13 4.96 -104.62 -0.52 -1.65 16 21 C -0.09 -1.22 9.35 -39.58 -0.37 -1.59 16 22 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 25 C -0.11 -1.33 9.68 -39.59 -0.38 -1.72 16 26 H 0.22 2.37 7.80 -54.09 -0.42 1.95 16 27 H 0.09 1.94 5.64 -52.48 -0.30 1.64 16 28 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 29 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 30 H 0.13 3.46 6.15 -52.49 -0.32 3.14 16 31 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 32 H 0.13 1.93 7.64 -52.48 -0.40 1.53 16 33 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -29.28 319.53 -8.78 -38.06 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -3.85 Total: 8.32 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: -5.15 Total: -38.09 kcal Atomic # 7 Polarization: -21.00 SS G_CDS: 0.60 Total: -20.40 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.17 Total: -6.51 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.28 -8.78 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.594 kcal (2) G-P(sol) polarization free energy of solvation -29.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds