Wall clock time and date at job start Tue Mar 31 2020 00:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08993 * 109.46761 * 29.43464 * 3 2 1 5 5 O 1.42895 * 109.47029 * 269.43066 * 3 2 1 6 6 C 1.35677 * 116.99738 * 84.74137 * 5 3 2 7 7 C 1.39308 * 119.82090 * 354.57691 * 6 5 3 8 8 C 1.36436 * 120.18973 * 179.97438 * 7 6 5 9 9 C 1.40835 * 119.80817 * 0.28070 * 8 7 6 10 10 C 1.41209 * 120.17730 * 179.72231 * 9 8 7 11 11 H 1.08006 * 120.00371 * 27.53298 * 10 9 8 12 12 C 1.39892 * 120.00082 * 207.53578 * 10 9 8 13 13 N 1.30884 * 119.99826 * 11.22085 * 12 10 9 14 14 Si 1.86802 * 120.00055 * 191.23008 * 12 10 9 15 15 H 1.48496 * 109.47293 * 89.99470 * 14 12 10 16 16 H 1.48501 * 109.46831 * 209.99701 * 14 12 10 17 17 H 1.48506 * 109.46996 * 329.99326 * 14 12 10 18 18 C 1.40831 * 119.64193 * 359.42504 * 9 8 7 19 19 C 1.36439 * 119.81164 * 0.57639 * 18 9 8 20 20 C 1.50700 * 109.46774 * 149.43071 * 3 2 1 21 21 C 1.38240 * 119.99834 * 84.72970 * 20 3 2 22 22 C 1.38234 * 119.99918 * 179.78593 * 21 20 3 23 23 C 1.38230 * 120.00224 * 0.43720 * 22 21 20 24 24 C 1.38237 * 119.99658 * 359.81323 * 23 22 21 25 25 C 1.38228 * 120.00237 * 359.97438 * 24 23 22 26 26 H 4.18737 * 15.04103 * 0.02562 * 4 2 1 27 27 H 1.08010 * 119.90459 * 359.97438 * 7 6 5 28 28 H 1.08002 * 120.09500 * 180.02562 * 8 7 6 29 29 H 0.96997 * 119.99589 * 180.02562 * 13 12 10 30 30 H 1.07999 * 120.09900 * 180.29632 * 18 9 8 31 31 H 1.07995 * 119.90966 * 179.70481 * 19 18 9 32 32 H 1.08009 * 119.99965 * 359.97438 * 21 20 3 33 33 H 1.08006 * 119.99657 * 180.27386 * 22 21 20 34 34 H 1.07997 * 120.00164 * 179.83661 * 23 22 21 35 35 H 1.08004 * 119.99981 * 179.97438 * 24 23 22 36 36 H 1.08004 * 120.00099 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0097 -0.8942 -0.5050 5 8 3.1224 0.0143 1.3472 6 6 3.2237 -1.1833 1.9767 7 6 2.7639 -2.3380 1.3473 8 6 2.8626 -3.5462 1.9733 9 6 3.4259 -3.6233 3.2618 10 6 3.5265 -4.8689 3.9192 11 1 3.6065 -5.7789 3.3429 12 6 3.5224 -4.9245 5.3170 13 7 3.2074 -3.8619 6.0132 14 14 3.9669 -6.5151 6.1898 15 1 5.4301 -6.5502 6.4403 16 1 3.2413 -6.5893 7.4834 17 1 3.5823 -7.6704 5.3396 18 6 3.8940 -2.4522 3.8884 19 6 3.7878 -1.2517 3.2487 20 6 3.1478 1.2243 -0.7226 21 6 3.2739 2.4232 -0.0462 22 6 3.7383 3.5446 -0.7079 23 6 4.0680 3.4692 -2.0482 24 6 3.9369 2.2715 -2.7259 25 6 3.4767 1.1491 -2.0631 26 1 -1.0500 -0.0006 -0.0009 27 1 2.3281 -2.2764 0.3610 28 1 2.5061 -4.4405 1.4837 29 1 3.2050 -3.9004 6.9824 30 1 4.3316 -2.5034 4.8745 31 1 4.1419 -0.3520 3.7298 32 1 3.0125 2.4831 1.0001 33 1 3.8410 4.4802 -0.1783 34 1 4.4283 4.3459 -2.5658 35 1 4.1941 2.2126 -3.7732 36 1 3.3740 0.2134 -2.5927 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225265269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:03 Heat of formation + Delta-G solvation = 52.438312 kcal Electronic energy + Delta-G solvation = -19656.546167 eV Core-core repulsion = 16650.791979 eV Total energy + Delta-G solvation = -3005.754188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12215 -39.86571 -38.26501 -35.36967 -34.50501 -32.37342 -31.83735 -31.61281 -30.86281 -27.89683 -26.59340 -23.57280 -23.34069 -22.52850 -22.31761 -19.74171 -19.31034 -18.57310 -17.89646 -17.05350 -16.57567 -16.48762 -15.92624 -15.76467 -15.44721 -14.85892 -14.51673 -14.27769 -14.11932 -14.02561 -13.82332 -13.52943 -13.13829 -12.87346 -12.77781 -12.48503 -12.32300 -12.03730 -11.89545 -11.74117 -11.57615 -11.31158 -11.08476 -10.96731 -9.85337 -9.77964 -9.59291 -8.93561 -8.56946 -6.27680 0.30561 0.47411 0.91418 0.99481 1.40102 1.51236 1.53471 1.54143 1.77235 2.23394 2.67509 2.73063 2.85472 3.39490 3.66523 3.80289 3.94208 4.13501 4.17675 4.26765 4.30164 4.33460 4.60993 4.66180 4.83092 4.91258 5.00824 5.03488 5.13324 5.18321 5.27253 5.50010 5.51564 5.58201 5.60838 5.67423 5.85026 6.03800 6.06155 6.24109 6.53117 6.55014 6.74154 6.94412 7.03954 8.39673 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.035416 B = 0.003490 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.413734 B = 8021.286610 C = 8212.357906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.248 4.248 3 C 0.238 3.762 4 H 0.095 0.905 5 O -0.315 6.315 6 C -0.001 4.001 7 C -0.162 4.162 8 C -0.203 4.203 9 C 0.057 3.943 10 C -0.497 4.497 11 H 0.076 0.924 12 C 0.030 3.970 13 N -0.838 5.838 14 Si 0.986 3.014 15 H -0.262 1.262 16 H -0.270 1.270 17 H -0.259 1.259 18 C -0.146 4.146 19 C -0.131 4.131 20 C -0.099 4.099 21 C -0.110 4.110 22 C -0.127 4.127 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.256 0.744 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.286 0.714 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 10.564 -13.122 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.249 4.249 3 C 0.182 3.818 4 H 0.113 0.887 5 O -0.231 6.231 6 C -0.044 4.044 7 C -0.181 4.181 8 C -0.223 4.223 9 C 0.055 3.945 10 C -0.527 4.527 11 H 0.094 0.906 12 C -0.183 4.183 13 N -0.465 5.465 14 Si 0.807 3.193 15 H -0.187 1.187 16 H -0.195 1.195 17 H -0.183 1.183 18 C -0.165 4.165 19 C -0.149 4.149 20 C -0.099 4.099 21 C -0.128 4.128 22 C -0.145 4.145 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.133 4.133 26 H 0.272 0.728 27 H 0.137 0.863 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.162 0.838 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.380 10.828 -12.808 16.776 hybrid contribution -0.284 -0.927 0.768 1.237 sum -0.664 9.900 -12.040 15.602 Atomic orbital electron populations 1.25839 0.96700 0.98704 0.96457 1.23755 0.95321 1.02338 1.03469 1.17693 0.83803 0.97804 0.82541 0.88749 1.85962 1.82122 1.28593 1.26380 1.18700 1.07366 0.83968 0.94375 1.20620 1.04742 0.92610 1.00122 1.20826 1.06923 0.96565 0.97975 1.17956 0.90364 0.94136 0.92023 1.19735 1.46878 0.93827 0.92301 0.90551 1.26752 0.91726 1.01613 0.98190 1.69865 1.36022 1.31951 1.08706 0.85136 0.79226 0.77389 0.77515 1.18675 1.19452 1.18262 1.20985 1.03141 0.91825 1.00557 1.20018 1.03544 0.97975 0.93393 1.19505 1.02112 0.93381 0.94932 1.21095 0.98975 0.92789 0.99963 1.21449 0.99008 0.98375 0.95645 1.21602 0.98495 0.98924 0.94186 1.21465 0.98872 0.92106 1.01319 1.21184 0.98850 1.00582 0.92659 0.72811 0.86276 0.87573 0.90311 0.86685 0.87158 0.87127 0.83849 0.82747 0.82696 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 19.25 74.32 1.43 -3.16 16 2 C -0.25 -8.45 11.89 31.12 0.37 -8.08 16 3 C 0.24 8.31 2.33 28.04 0.07 8.38 16 4 H 0.10 3.20 6.21 -2.39 -0.01 3.19 16 5 O -0.31 -13.34 8.91 -89.95 -0.80 -14.14 16 6 C 0.00 -0.03 6.61 22.79 0.15 0.12 16 7 C -0.16 -7.52 8.62 22.11 0.19 -7.33 16 8 C -0.20 -10.26 9.74 22.48 0.22 -10.04 16 9 C 0.06 3.18 5.56 -21.28 -0.12 3.06 16 10 C -0.50 -27.23 9.05 23.40 0.21 -27.02 16 11 H 0.08 4.01 7.87 -2.91 -0.02 3.98 16 12 C 0.03 1.54 5.25 85.23 0.45 1.98 16 13 N -0.84 -44.79 10.80 21.82 0.24 -44.56 16 14 Si 0.99 38.87 29.57 68.60 2.03 40.89 16 15 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 16 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 17 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 18 C -0.15 -7.94 8.61 22.48 0.19 -7.75 16 19 C -0.13 -6.55 9.92 22.11 0.22 -6.33 16 20 C -0.10 -2.96 4.96 -19.87 -0.10 -3.06 16 21 C -0.11 -3.16 9.35 22.27 0.21 -2.95 16 22 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 23 C -0.11 -2.02 10.05 22.27 0.22 -1.80 16 24 C -0.12 -2.21 10.05 22.27 0.22 -1.98 16 25 C -0.11 -2.72 9.68 22.27 0.22 -2.50 16 26 H 0.26 4.75 7.80 -4.42 -0.03 4.71 16 27 H 0.12 4.84 5.64 -2.91 -0.02 4.82 16 28 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 29 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 30 H 0.12 6.49 6.15 -2.91 -0.02 6.47 16 31 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 32 H 0.11 3.47 7.64 -2.91 -0.02 3.44 16 33 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 34 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -65.33 319.53 6.92 -58.41 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 1.08 Total: 30.39 kcal Atomic # 6 Polarization: -75.36 SS G_CDS: 4.38 Total: -70.99 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.24 Total: -44.56 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.80 Total: -14.14 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.89 kcal Total: -65.33 6.92 -58.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.843 kcal (2) G-P(sol) polarization free energy of solvation -65.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds