Wall clock time and date at job start Tue Mar 31 2020 00:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47120 * 0.95714 * 3 2 1 5 5 O 1.42896 * 109.47506 * 120.96267 * 3 2 1 6 6 C 1.35674 * 116.99768 * 274.79713 * 5 3 2 7 7 C 1.39312 * 119.82035 * 185.10095 * 6 5 3 8 8 C 1.36437 * 120.18876 * 180.27133 * 7 6 5 9 9 C 1.40827 * 119.81080 * 0.02562 * 8 7 6 10 10 C 1.41218 * 120.18044 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00041 * 208.23319 * 10 9 8 12 12 C 1.39893 * 119.99783 * 28.23297 * 10 9 8 13 13 N 1.30884 * 119.99790 * 12.09421 * 12 10 9 14 14 Si 1.86795 * 120.00137 * 192.08618 * 12 10 9 15 15 H 1.48503 * 109.47066 * 89.99977 * 14 12 10 16 16 H 1.48496 * 109.47267 * 210.00078 * 14 12 10 17 17 H 1.48498 * 109.47178 * 330.00360 * 14 12 10 18 18 C 1.40836 * 119.64189 * 359.97438 * 9 8 7 19 19 C 1.36435 * 119.81063 * 0.02562 * 18 9 8 20 20 C 1.50702 * 109.47113 * 240.96220 * 3 2 1 21 21 C 1.38241 * 119.99808 * 279.72750 * 20 3 2 22 22 C 1.38231 * 119.99781 * 179.78605 * 21 20 3 23 23 C 1.38238 * 120.00510 * 0.44047 * 22 21 20 24 24 C 1.38243 * 119.99311 * 359.81179 * 23 22 21 25 25 C 1.38230 * 120.00304 * 359.97438 * 24 23 22 26 26 H 4.18737 * 15.03908 * 0.02562 * 4 2 1 27 27 H 1.08005 * 119.90638 * 0.27471 * 7 6 5 28 28 H 1.07997 * 120.09203 * 180.02562 * 8 7 6 29 29 H 0.97002 * 119.99861 * 180.02562 * 13 12 10 30 30 H 1.08003 * 120.09412 * 180.02562 * 18 9 8 31 31 H 1.08000 * 119.90445 * 179.97438 * 19 18 9 32 32 H 1.07999 * 119.99639 * 359.97438 * 21 20 3 33 33 H 1.08005 * 120.00186 * 180.27059 * 22 21 20 34 34 H 1.07994 * 120.00709 * 179.83257 * 23 22 21 35 35 H 1.07995 * 119.99424 * 179.97438 * 24 23 22 36 36 H 1.07997 * 120.00470 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0267 -0.0172 5 8 3.1221 0.6940 -1.1552 6 6 3.2324 -0.0229 -2.3018 7 6 3.7900 0.5647 -3.4352 8 6 3.8996 -0.1475 -4.5938 9 6 3.4465 -1.4801 -4.6420 10 6 3.5556 -2.2243 -5.8372 11 1 2.8530 -3.0175 -6.0454 12 6 4.5738 -1.9338 -6.7515 13 7 5.5596 -1.1458 -6.4046 14 14 4.5267 -2.6708 -8.4672 15 1 3.7890 -1.7586 -9.3777 16 1 5.9134 -2.8530 -8.9660 17 1 3.8400 -3.9867 -8.4220 18 6 2.8841 -2.0666 -3.4917 19 6 2.7819 -1.3406 -2.3411 20 6 3.1480 0.6905 1.2422 21 6 3.1871 2.0713 1.2982 22 6 3.6434 2.7041 2.4392 23 6 4.0693 1.9563 3.5211 24 6 4.0351 0.5755 3.4632 25 6 3.5746 -0.0573 2.3238 26 1 -1.0500 -0.0010 -0.0005 27 1 4.1366 1.5869 -3.3967 28 1 4.3324 0.3094 -5.4714 29 1 6.2655 -0.9441 -7.0387 30 1 2.5347 -3.0881 -3.5203 31 1 2.3504 -1.7887 -1.4582 32 1 2.8582 2.6555 0.4514 33 1 3.6698 3.7829 2.4846 34 1 4.4283 2.4507 4.4116 35 1 4.3682 -0.0087 4.3082 36 1 3.5475 -1.1360 2.2786 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:06 Heat of formation + Delta-G solvation = 65.530820 kcal Electronic energy + Delta-G solvation = -19655.902209 eV Core-core repulsion = 16650.715754 eV Total energy + Delta-G solvation = -3005.186454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.75510 -38.51958 -36.54343 -33.69007 -33.00353 -31.26949 -30.90063 -29.73625 -28.99117 -26.59299 -24.74624 -22.58665 -21.94719 -20.85880 -20.70562 -18.39993 -17.42483 -17.07309 -16.73983 -15.47916 -15.22656 -15.14041 -14.68389 -14.27517 -13.94525 -13.39505 -13.26111 -12.94326 -12.74101 -12.28474 -12.22476 -11.91166 -11.68150 -11.29520 -11.13058 -11.08577 -10.98116 -10.74176 -10.43496 -10.07044 -9.98902 -9.79362 -9.30829 -9.10630 -8.92475 -8.81884 -7.65128 -7.01273 -6.68442 -4.28306 1.26830 1.40745 2.76662 2.83579 2.92085 3.01389 3.09477 3.12781 3.19884 3.74958 3.96642 4.11663 4.56853 4.68824 4.86315 4.93766 5.04490 5.14438 5.40966 5.52438 5.62130 5.65232 5.89686 6.02920 6.06009 6.08113 6.19640 6.41883 6.48907 6.55952 6.73445 6.96045 6.97207 7.10821 7.19140 7.44441 7.55350 7.75648 7.77167 8.00506 8.20090 8.40227 8.63746 8.90757 8.97127 10.26489 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.032781 B = 0.003555 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.935357 B = 7874.704614 C = 8202.291094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.195 4.195 3 C 0.240 3.760 4 H 0.096 0.904 5 O -0.305 6.305 6 C -0.010 4.010 7 C -0.118 4.118 8 C -0.128 4.128 9 C 0.089 3.911 10 C -0.464 4.464 11 H 0.076 0.924 12 C 0.073 3.927 13 N -0.806 5.806 14 Si 0.910 3.090 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.264 1.264 18 C -0.193 4.193 19 C -0.165 4.165 20 C -0.076 4.076 21 C -0.085 4.085 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.105 4.105 26 H 0.218 0.782 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.279 0.721 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.356 3.905 13.851 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.183 3.817 4 H 0.114 0.886 5 O -0.221 6.221 6 C -0.052 4.052 7 C -0.137 4.137 8 C -0.148 4.148 9 C 0.087 3.913 10 C -0.494 4.494 11 H 0.094 0.906 12 C -0.143 4.143 13 N -0.432 5.432 14 Si 0.735 3.265 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.213 4.213 19 C -0.183 4.183 20 C -0.076 4.076 21 C -0.103 4.103 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.123 4.123 26 H 0.235 0.765 27 H 0.116 0.884 28 H 0.145 0.855 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.069 4.187 13.767 14.713 hybrid contribution -0.196 -0.598 -0.769 0.993 sum -3.265 3.589 12.998 13.874 Atomic orbital electron populations 1.24861 0.95753 1.00417 0.99397 1.23496 0.94645 1.00545 1.00868 1.17518 0.83176 0.96746 0.84258 0.88613 1.85987 1.82084 1.37806 1.16228 1.18616 1.08624 0.92039 0.85952 1.19841 1.02971 0.99112 0.91767 1.21013 1.03118 0.94082 0.96537 1.17614 0.90202 0.91472 0.92009 1.19469 1.11844 1.16163 1.01943 0.90610 1.25862 0.94210 0.94166 1.00090 1.69803 1.07945 1.29888 1.35605 0.86278 0.78159 0.80207 0.81821 1.19406 1.20376 1.18773 1.20611 1.09399 0.98454 0.92826 1.20402 1.05372 0.94088 0.98488 1.19514 0.99953 0.94245 0.93893 1.21078 0.97432 0.93999 0.97776 1.21167 0.99705 0.99932 0.93509 1.21165 0.99855 0.94143 0.98566 1.21053 1.00534 0.94748 0.97877 1.20976 0.98401 0.99922 0.92998 0.76545 0.88383 0.85456 0.90998 0.88647 0.88734 0.85340 0.85962 0.86165 0.85908 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 19.25 29.55 0.57 -2.18 16 2 C -0.20 -3.31 11.93 -37.12 -0.44 -3.75 16 3 C 0.24 4.17 2.32 -30.67 -0.07 4.10 16 4 H 0.10 1.63 6.13 -51.93 -0.32 1.32 16 5 O -0.31 -6.35 9.07 -18.72 -0.17 -6.52 16 6 C -0.01 -0.22 6.61 -38.78 -0.26 -0.48 16 7 C -0.12 -2.87 9.92 -39.83 -0.40 -3.26 16 8 C -0.13 -3.35 8.61 -39.25 -0.34 -3.69 16 9 C 0.09 2.39 5.55 -106.80 -0.59 1.80 16 10 C -0.46 -12.35 9.05 -37.83 -0.34 -12.70 16 11 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 12 C 0.07 1.83 5.23 -17.34 -0.09 1.74 16 13 N -0.81 -20.95 10.87 55.55 0.60 -20.35 16 14 Si 0.91 18.84 29.58 -169.99 -5.03 13.82 16 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 18 C -0.19 -4.78 9.74 -39.25 -0.38 -5.17 16 19 C -0.16 -3.78 8.63 -39.83 -0.34 -4.13 16 20 C -0.08 -1.15 4.94 -104.62 -0.52 -1.66 16 21 C -0.08 -1.22 9.35 -39.58 -0.37 -1.59 16 22 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 24 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.10 -1.34 9.67 -39.58 -0.38 -1.73 16 26 H 0.22 2.26 7.80 -54.09 -0.42 1.84 16 27 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 28 H 0.13 3.41 6.22 -52.49 -0.33 3.08 16 29 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 30 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 31 H 0.09 1.93 5.65 -52.49 -0.30 1.64 16 32 H 0.13 1.89 7.77 -52.49 -0.41 1.49 16 33 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.37 8.04 -52.49 -0.42 0.95 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -29.24 319.84 -8.78 -38.01 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -3.85 Total: 8.20 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: -5.15 Total: -37.99 kcal Atomic # 7 Polarization: -20.95 SS G_CDS: 0.60 Total: -20.35 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.17 Total: -6.52 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.24 -8.78 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.545 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds